Dosimetric characteristics of a new linear accelerator under gated operation.

Respiratory gated radiotherapy may allow reduction of the treatment margins, thus sparing healthy tissue and/or allowing dose escalation to the tumor. However, current commissioning and quality assurance of linear accelerators do not include evaluation of gated delivery. The purpose of this study is to test gated photon delivery of a Siemens ONCOR Avant-Garde linear accelerator. Dosimetric characteristics for gated and nongated delivery of 6-MV and 15-MV photons were compared for the range of doses, dose rates, and for several gating regimes. Dose profiles were also compared using Kodak EDR2 and X-Omat V films for 6-MV and 15-MV photons for several dose rates and gating regimes. Results showed that deviation is less than or equal to 0.6% for all dose levels evaluated with the exception of the lowest dose delivered at 25 MU at an unrealistically high gating frequency of 0.5 Hz. At 400 MU, dose profile deviations along the central axes in in-plane and cross-plane directions within 80% of the field size are below 0.7%. No unequivocally detectable dose profile deviation was observed for 50 MU. Based on the comparison with widely accepted standards for conventional delivery, our results indicate that this LINAC is well suited for gated delivery of nondynamic fields

Mathematical Analysis and Simulations of the Neural Circuit for Locomotion in Lamprey

We analyze the dynamics of the neural circuit of the lamprey central pattern generator (CPG). This analysis provides insights into how neural interactions form oscillators and enable spontaneous oscillations in a network of damped oscillators, which were not apparent in previous simulations or abstract phase oscillator models. We also show how the different behaviour regimes (characterized by phase and amplitude relationships between oscillators) of forward/backward swimming, and turning, can be controlled using the neural connection strengths and external inputs.Comment: 4 pages, accepted for publication in Physical Review Letter

Gulf Stream and wind‐induced current variability on the Georgia continental shelf, winter 1978

Low‐frequency longshore current fluctuations on the continental shelf off Georgia and their relationships with local atmospheric forcing and Gulf Stream displacement were examined for a 3‐month period from January to April 1978. (Acoustic travel time and bottom pressure measurements at a station on the continental slope were used to determine the depth of the main thermocline, as an indicator of Gulf Stream displacement.) On the middle shelf, current variability was dominated by local wind forcing at periods longer than 2 days, with very little Gulf Stream influence. Longshore wind stress was the main driving force at periods longer than 4 days, while cross‐shore wind contributed at shorter periods. In contrast, on the outer shelf, current fluctuations in the upper layer were highly coherent with Gulf Stream displacement at a 12‐day period, and marginally coherent with longshore wind at a 6‐day period. Linear regression analysis showed that Gulf Stream and local wind forcing accounted for most of the fluctuations in the upper layer over the shelf break for time scales greater than 5 days and at around 2 days. A low multiple coherence window at 2.8–5 days was probably due to Gulf Stream frontal eddies. In the lower layer over the shelf break the current fluctuations had a character intermediate between the upper layer currents (Gulf Stream dominated) and mid‐shelf currents (wind dominated)

Mild and selective catalytic oxidation of organic substrates by a carbon nanotube-rhodium nanohybrid

International audienceA heterogeneous catalyst was assembled by stabilization of rhodium nanoparticles on carbon nanotubes. The nanohybrid was used for the catalytic aerobic oxidation of diverse substrates such as hydroquinones, hydroxylamines, silanes, hydrazines and thiols, at room temperature. The system proved very efficient on the investigated substrates and demonstrated high selectivity. The selective oxidation of organic compounds under mild conditions is of practical importance in synthetic chemistry. In addition to classical stoichiometric processes, catalytic systems have been devised to perform oxidation reactions. 1 Further improvements in terms of sustainability were also achieved by supporting the catalysts, thus allowing their reclaim and reuse. 2 Among the various catalyst supports, nanostructured carbon allotropes, in particular carbon nanotubes (CNTs), have emerged as highly promising platforms that provide unique advantages such as chemical, thermal, and mechanical stability in liquid media, inertness, high specific surface area, and chemically tunable topography. 3 We previously reported supramolecular assemblies of metallic nanoparticles (e.g. Au, Pd, Ru) on carbon nanotubes. These assemblies afforded metal-coated CNTs that were subsequently used in the heterogeneous catal-ysis of various organic transformations. 4 In the course of our investigations we demonstrated that CNTs acted as synergistic support capable of enhancing the performances of the catalytic metal. With these critical features in mind, we sought to expand the scope of our nanohybrid systems by developing a catalyst that would promote a broad scope of oxidation reactions under mild and sustainable conditions

Graphene as Transparent Electrode for Direct Observation of Hole Photoemission from Silicon to Oxide

The outstanding electrical and optical properties of graphene make it an excellent alternative as a transparent electrode. Here we demonstrate the application of graphene as collector material in internal photoemission (IPE) spectroscopy; enabling the direct observation of both electron and hole injections at a Si/Al2O3 interface and successfully overcoming the long-standing difficulty of detecting holes injected from a semiconductor emitter in IPE measurements. The observed electron and hole barrier heights are 3.5 eV and 4.1 eV, respectively. Thus the bandgap of Al2O3 can be further deduced to be 6.5 eV, in close agreement with the valued obtained by vacuum ultraviolet spectroscopic ellipsometry analysis. The detailed optical modeling of a graphene/Al2O3/Si stack reveals that by using graphene in IPE measurements the carrier injection from the emitter is significantly enhanced and the contribution of carrier injection from the collector electrode is minimal. The method can be readily extended to various IPE test structures for a complete band alignment analysis and interface characterization.Comment: 15 pages, 5 figure

Relativistic Quantum Gravity at a Lifshitz Point

We show that the Horava theory for the completion of General Relativity at UV scales can be interpreted as a gauge fixed theory, and it can be extended to an invariant theory under the full group of four-dimensional diffeomorphisms. In this respect, although being fully relativistic, it results to be locally anisotropic in the time-like and space-like directions defined by a family of irrotational observers. We show that this theory propagates generically three degrees of freedom: two of them are related to the four-dimensional diffeomorphism invariant graviton (the metric) and one is related to a propagating scalar mode. Finally, we note that in the present formulation, matter can be consistently coupled to gravity.Comment: v4: Erratum added: explanation on the true dynamical fields of the relativistic theory added. The theory is interpreted as a Tensor-Scalar relativistic theory. Reference added. Version accepted in JHE

CDKL Family Kinases Have Evolved Distinct Structural Features and Ciliary Function

Various kinases, including a cyclin-dependent kinase (CDK) family member, regulate the growth and functions of primary cilia, which perform essential roles in signaling and development. Neurological disorders linked to CDK-Like (CDKL) proteins suggest that these underexplored kinases may have similar functions. Here, we present the crystal structures of human CDKL1, CDKL2, CDKL3, and CDKL5, revealing their evolutionary divergence from CDK and mitogen-activated protein kinases (MAPKs), including an unusual ?J helix important for CDKL2 and CDKL3 activity. C. elegans CDKL-1, most closely related to CDKL1-4 and localized to neuronal cilia transition zones, modulates cilium length; this depends on its kinase activity and ?J helix-containing C terminus. Human CDKL5, linked to Rett syndrome, also localizes to cilia, and it impairs ciliogenesis when overexpressed. CDKL5 patient mutations modeled in CDKL-1 cause localization and/or cilium length defects. Together, our studies establish a disease model system suggesting cilium length defects as a pathomechanism for neurological disorders, including epilepsy

Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure

Heart failure is a leading cause of mortality, yet our understanding of the genetic interactions underlying this disease remains incomplete. Here, we harvest 1352 healthy and failing human hearts directly from transplant center operating rooms, and obtain genome-wide genotyping and gene expression measurements for a subset of 313. We build failing and non-failing cardiac regulatory gene networks, revealing important regulators and cardiac expression quantitative trait loci (eQTLs). PPP1R3A emerges as a regulator whose network connectivity changes significantly between health and disease. RNA sequencing after PPP1R3A knockdown validates network-based predictions, and highlights metabolic pathway regulation associated with increased cardiomyocyte size and perturbed respiratory metabolism. Mice lacking PPP1R3A are protected against pressure-overload heart failure. We present a global gene interaction map of the human heart failure transition, identify previously unreported cardiac eQTLs, and demonstrate the discovery potential of disease-specific networks through the description of PPP1R3A as a central regulator in heart failure

The GstLAL template bank for spinning compact binary mergers in the second observation run of Advanced LIGO and Virgo

We describe the methods used to construct the aligned-spin template bank of gravitational waveforms used by the GstLAL-based inspiral pipeline to analyze data from the second observing run of Advanced LIGO and Virgo. The bank expands upon the parameter space covered during the first observing run, including coverage for merging compact binary systems with total mass between 2 $\mathrm{M}_{\odot}$ and 400 $\mathrm{M}_{\odot}$ and mass ratios between 1 and 97.989. Thus the systems targeted include merging neutron star-neutron star systems, neutron star-black hole binaries, and black hole-black hole binaries expanding into the intermediate-mass range. Component masses less than 2 $\mathrm{M}_{\odot}$ have allowed (anti-)aligned spins between $\pm0.05$ while component masses greater than 2 $\mathrm{M}_{\odot}$ have allowed (anti-)aligned between $\pm0.999$. The bank placement technique combines a stochastic method with a new grid-bank method to better isolate noisy templates, resulting in a total of 677,000 templates.Comment: 9 pages, 13 figure

A Revised Design for Microarray Experiments to Account for Experimental Noise and Uncertainty of Probe Response

Background Although microarrays are analysis tools in biomedical research, they are known to yield noisy output that usually requires experimental confirmation. To tackle this problem, many studies have developed rules for optimizing probe design and devised complex statistical tools to analyze the output. However, less emphasis has been placed on systematically identifying the noise component as part of the experimental procedure. One source of noise is the variance in probe binding, which can be assessed by replicating array probes. The second source is poor probe performance, which can be assessed by calibrating the array based on a dilution series of target molecules. Using model experiments for copy number variation and gene expression measurements, we investigate here a revised design for microarray experiments that addresses both of these sources of variance. Results Two custom arrays were used to evaluate the revised design: one based on 25 mer probes from an Affymetrix design and the other based on 60 mer probes from an Agilent design. To assess experimental variance in probe binding, all probes were replicated ten times. To assess probe performance, the probes were calibrated using a dilution series of target molecules and the signal response was fitted to an adsorption model. We found that significant variance of the signal could be controlled by averaging across probes and removing probes that are nonresponsive or poorly responsive in the calibration experiment. Taking this into account, one can obtain a more reliable signal with the added option of obtaining absolute rather than relative measurements. Conclusion The assessment of technical variance within the experiments, combined with the calibration of probes allows to remove poorly responding probes and yields more reliable signals for the remaining ones. Once an array is properly calibrated, absolute quantification of signals becomes straight forward, alleviating the need for normalization and reference hybridizations