The cuttlefish Sepia officinalis (Sepiidae, Cephalopoda) constructs cuttlebone from a liquid-crystal precursor

Cuttlebone, the sophisticated buoyancy device of cuttlefish, is made of extensive superposed chambers that have a complex internal arrangement of calcified pillars and organic membranes. It has not been clear how this structure is assembled. We find that the membranes result from a myriad of minor membranes initially filling the whole chamber, made of nanofibres evenly oriented within each membrane and slightly rotated with respect to those of adjacent membranes, producing a helical arrangement. We propose that the organism secretes a chitin-protein complex, which self-organizes layer-by-layer as a cholesteric liquid crystal, whereas the pillars are made by viscous fingering. The liquid crystallization mechanism permits us to homologize the elements of the cuttlebone with those of other coleoids and with the nacreous septa and the shells of nautiloids. These results challenge our view of this ultra-light natural material possessing desirable mechanical, structural and biological properties, suggesting that two self-organizing physical principles suffice to understand its formation.Spanish Ministerio de Ciencia e Innovacion [CGL2010-20748-CO2-01, CGL2013-48247-P, FIS2013-48444-C2-2-P]; Andalusian Consejeria de Innovacion Ciencia y Tecnologia [RNM6433]; (Sepiatech, PROMAR program) of the Portuguese Ministerio da Agricultura e do Mar, Portugal [31.03.05.FEP.002]; Junta de Andalucia [RNM363]; FP7 COST Action of the European Community. [TD0903]info:eu-repo/semantics/publishedVersio

'Colour and communion': Exploring the influences of visual art-making as a leisure activity on older women's subjective well-being

This is the post-print version of the final paper published in Journal of Aging Studies. The published article is available from the link below. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. Copyright @ 2009 Elsevier B.V.Research into the subjective experience of art-making for older people is limited, and has focused mostly on professional artists rather than amateurs. This study examined older women's motives for visual art-making. Thirty-two participants aged 60-86 years old were interviewed. Twelve lived with chronic illness; twenty reported good health. Nearly all had taken up art after retirement; two had since become professional artists. Participants described their art-making as enriching their mental life, promoting enjoyment of the sensuality of colour and texture, presenting new challenges, playful experimentation, and fresh ambitions. Art also afforded participants valued connections with the world outside the home and immediate family. It encouraged attention to the aesthetics of the physical environment, preserved equal status relationships, and created opportunities for validation. Art-making protected the women's identities, helping them to resist the stereotypes and exclusions which are commonly encountered in later life.AHR

The Destruction of Tori in Volume-Preserving Maps

Invariant tori are prominent features of symplectic and volume preserving maps. From the point of view of chaotic transport the most relevant tori are those that are barriers, and thus have codimension one. For an $n$-dimensional volume-preserving map, such tori are prevalent when the map is nearly "integrable," in the sense of having one action and $n-1$ angle variables. As the map is perturbed, numerical studies show that the originally connected image of the frequency map acquires gaps due to resonances and domains of nonconvergence due to chaos. We present examples of a three-dimensional, generalized standard map for which there is a critical perturbation size, $\epsilon_c$, above which there are no tori. Numerical investigations to find the "last invariant torus" reveal some similarities to the behavior found by Greene near a critical invariant circle for area preserving maps: the crossing time through the newly destroyed torus appears to have a power law singularity at $\epsilon_c$, and the local phase space near the critical torus contains many high-order resonances.Comment: laTeX, 16 figure

Rewilding of Protected Areas Enhances Resilience of Marine Ecosystems to Extreme Climatic Events

Marine protected areas (MPAs) are employed as tools to manage human impacts, especially fishing pressure. By excluding the most destructive activities MPAs can rewild degraded areas of seabed habitat. The potential for MPAs to increase ecosystem resilience from storms is, however, not understood, nor how such events impact seabed habitats. Extreme storm disturbance impact was studied in Lyme Bay MPA, Southwest United Kingdom, where the 2008 exclusion of bottom-towed fishing from the whole site allowed recovery of degraded temperate reef assemblages to a more complex community. Severe storm impacts in 2013–2014 resulted in major damage to the seabed so that assemblages in the MPA were more similar to sites where fishing continued than at any point since the designation of the MPA; the communities were not dominated by species resistant to physical disturbance. Nevertheless, annual surveys since 2014 have demonstrated that the initial recovery of MPA assemblages was much quicker than that seen following the cessation of chronic towed fishing impact in 2008. Likewise, General Additive Mixed Effect Models (GAMMs) showed that inside the MPA increases in diversity metrics post-Storm were greater and more consistent over time than post-Bottom-Towed Fishing. As extreme events are likely to become more common with climate change, wave exposure observations indicated that 29% of coastal reef MPAs around the United Kingdom may be exposed to comparable wave climate extremes, and may be similarly impacted. This paper therefore provides an insight into the likely extent and magnitude of ecological responses of seabed ecosystems to future extreme disturbance events.</jats:p

Greene's Residue Criterion for the Breakup of Invariant Tori of Volume-Preserving Maps

Invariant tori play a fundamental role in the dynamics of symplectic and volume-preserving maps. Codimension-one tori are particularly important as they form barriers to transport. Such tori foliate the phase space of integrable, volume-preserving maps with one action and $d$ angles. For the area-preserving case, Greene's residue criterion is often used to predict the destruction of tori from the properties of nearby periodic orbits. Even though KAM theory applies to the three-dimensional case, the robustness of tori in such systems is still poorly understood. We study a three-dimensional, reversible, volume-preserving analogue of Chirikov's standard map with one action and two angles. We investigate the preservation and destruction of tori under perturbation by computing the "residue" of nearby periodic orbits. We find tori with Diophantine rotation vectors in the "spiral mean" cubic algebraic field. The residue is used to generate the critical function of the map and find a candidate for the most robust torus.Comment: laTeX, 40 pages, 26 figure

Structure of hydrated calcium carbonates: A first-principles study

The structures of both ikaite (CaCO3·6H2O) and monohydrocalcite (CaCO3·H2O) were computed at the PBE0 level of theory, using all electron Gaussian type basis sets. Correction for the long-range dispersion contribution was included for the oxygen–oxygen interactions by using an additive pairwise term with the atomic coefficients fitted against the calcite vs aragonite enthalpy difference. The potential chirality of monohydrocalcite is discussed, as well as the helical motifs created by the three-fold rototranslational axes parallel to the [001] direction. These elements represent a significant link between monohydrocalcite and vaterite, both appearing as intermediate species during CaCO3 crystallization from amorphous calcium carbonate. The hydrogen bond pattern, never fully discussed for monohydrocalcite, is here described and compared to the available experimental data. Both phases are characterized by the presence of hydrogen bonds of moderate to high strength. Water molecules in monohydrocalcite interact quite strongly with 2 View the MathML source units through such hydrogen bonds, whereas their interaction with each other is minor. On the contrary, water molecules in ikaite create a complex network of hydrogen bonds, where each water molecule is strongly hydrogen bonded to one View the MathML source anion and to one or two other water molecules

A Canadian approach to the regionalization of testis cancer: A review.

At the Canadian Testis Cancer Workshop, the rationale and feasibility of regionalization of testis cancer care were discussed. The two-day workshop involved urologists, medical and radiation oncologists, pathologists, radiologists, physician's assistants, residents and fellows, and nurses, as well as patients and patient advocacy groups.This review summarizes the discussion and recommendations of one of the central topics of the workshop - the centralization of testis cancer in Canada. It was acknowledged that non-guideline-concordant care in testis cancer occurs frequently, in the range of 18-30%. The National Health Service in the U.K. stipulates various testis cancer care modalities be delivered through supra-regional network. All cases are reviewed at a multidisciplinary team meeting and aspects of care can be delivered locally through the network. In Germany, no such network exists, but an insurance-supported online second opinion network was developed that currently achieves expert case review in over 30% of cases. There are clear benefits to regionalization in terms of survival, treatment morbidity, and cost. There was agreement at the workshop that a structured pathway for diagnosis and treatment of testis cancer patients is required.Regionalization may be challenging in Canada because of geography; independent administration of healthcare by each province; physicians fearing loss of autonomy and revenue; patient unwillingness to travel long distances from home; and the inability of the larger centers to handle the ensuing increase in volume. We feel the first step is to identify the key performance indicators and quality metrics to track the quality of care received. After identifying these metrics, implementation of a "networks of excellence" model, similar to that seen in sarcoma care in Ontario, could be effective, coupled with increased use of health technology, such as virtual clinics and telemedicine

Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment

Multiple sequence alignment (MSA) is a fundamental and ubiquitous technique in bioinformatics used to infer related residues among biological sequences. Thus alignment accuracy is crucial to a vast range of analyses, often in ways difficult to assess in those analyses. To compare the performance of different aligners and help detect systematic errors in alignments, a number of benchmarking strategies have been pursued. Here we present an overview of the main strategies--based on simulation, consistency, protein structure, and phylogeny--and discuss their different advantages and associated risks. We outline a set of desirable characteristics for effective benchmarking, and evaluate each strategy in light of them. We conclude that there is currently no universally applicable means of benchmarking MSA, and that developers and users of alignment tools should base their choice of benchmark depending on the context of application--with a keen awareness of the assumptions underlying each benchmarking strategy.Comment: Revie

An overview of the ciao multiparadigm language and program development environment and its design philosophy

We describe some of the novel aspects and motivations behind the design and implementation of the Ciao multiparadigm programming system. An important aspect of Ciao is that it provides the programmer with a large number of useful features from different programming paradigms and styles, and that the use of each of these features can be turned on and off at will for each program module. Thus, a given module may be using e.g. higher order functions and constraints, while another module may be using objects, predicates, and concurrency. Furthermore, the language is designed to be extensible in a simple and modular way. Another important aspect of Ciao is its programming environment, which provides a powerful preprocessor (with an associated assertion language) capable of statically finding non-trivial bugs, verifying that programs comply with specifications, and performing many types of program optimizations. Such optimizations produce code that is highly competitive with other dynamic languages or, when the highest levéis of optimization are used, even that of static languages, all while retaining the interactive development environment of a dynamic language. The environment also includes a powerful auto-documenter. The paper provides an informal overview of the language and program development environment. It aims at illustrating the design philosophy rather than at being exhaustive, which would be impossible in the format of a paper, pointing instead to the existing literature on the system