A study of solid-stem expression in durum and common wheat

The wheat stem sawfly (WSS) is a damaging insect pest of wheat in North America. Resistance to WSS has primarily been achieved by introgressing the stem-solidness QTL SSt1 into elite cultivars. This thesis comprehensively examined the expression of SSt1 from both the phenotypic and genetic perspective. The first study investigated the influence of four sowing densities on pith expression for two newly released solid-stemmed durum cultivars, CDC Fortitude and AAC Raymore. Both cultivars had strong pith expression (average stem-solidness > 3.9) across all environments and sowing densities, in contrast to the common wheat cultivar Lillian (average stem-solidness = 2.2). Increasing sowing density had a positive effect on grain yield in all cultivars, but was negatively associated with stem-solidness. These findings suggest that, unlike with Lillian, altering sowing density is not required to achieve effective sawfly resistance with CDC Fortitude and AAC Raymore. For the second study, we improved the resolution of the SSt1 interval in durum and common wheat by localizing coincident QTL near the telomere of 3BL (LOD = 94 - 127, R2 = 78 - 92 %). The SSt1 interval spanned a 1.6 Mb interval on chromosome 3B. Minor QTL were identified on chromosomes 2A, 2D, 4A, and 5A that synergistically enhanced the expression of SSt1 to increase stem-solidness. These results suggest breeding for improved stem-solidness is possible by combining SSt1 with favorable alleles at minor loci. Finally, we investigated gene expression and structural variation within the SSt1 interval. This showed that in addition to structural variation between genome assemblies, the SSt1 locus has also undergone a series of functional gene duplication/expansion events. One gene encoding a Dof transcription factor (TraesCS3B01G60880) was consistently up-regulated across solid-stemmed cultivars. Further investigation revealed that solid-stemmed cultivars carry multiple copies of TraesCS3B01G60880. Screening of a mutant population identified two mutant lines with a hollow-stemmed phenotype that either have a deletion, or reduced expression of TraesCS3B01G60880. Taken together, this research provides new insights into the phenotypic and genetic expression of SSt1 in wheat, and will provide an important foundation for future experiments that will help breeders improve resistance to the WSS

A Novel Agonist of the TRIF Pathway Induces a Cellular State Refractory to Replication of Zika, Chikungunya, and Dengue Viruses.

The ongoing concurrent outbreaks of Zika, Chikungunya, and dengue viruses in Latin America and the Caribbean highlight the need for development of broad-spectrum antiviral treatments. The type I interferon (IFN) system has evolved in vertebrates to generate tissue responses that actively block replication of multiple known and potentially zoonotic viruses. As such, its control and activation through pharmacological agents may represent a novel therapeutic strategy for simultaneously impairing growth of multiple virus types and rendering host populations resistant to virus spread. In light of this strategy\u27s potential, we undertook a screen to identify novel interferon-activating small molecules. Here, we describe 1-(2-fluorophenyl)-2-(5-isopropyl-1,3,4-thiadiazol-2-yl)-1,2-dihydrochromeno[2,3

Measurements of differential cross sections of Z/gamma*+jets+X events in proton anti-proton collisions at sqrt{s}=1.96 TeV

We present cross section measurements for Z/gamma*+jets+X production, differential in the transverse momenta of the three leading jets. The data sample was collected with the D0 detector at the Fermilab Tevatron proton anti-proton collider at a center-of-mass energy of 1.96 TeV and corresponds to an integrated luminosity of 1 fb-1. Leading and next-to-leading order perturbative QCD predictions are compared with the measurements, and agreement is found within the theoretical and experimental uncertainties. We also make comparisons with the predictions of four event generators. Two parton-shower-based generators show significant shape and normalization differences with respect to the data. In contrast, two generators combining tree-level matrix elements with a parton shower give a reasonable description of the the shapes observed in data, but the predicted normalizations show significant differences with respect to the data, reflecting large scale uncertainties. For specific choices of scales, the normalizations for either generator can be made to agree with the measurements.Comment: Published in PLB. 11 pages, 3 figure

Simultaneous measurement of the ratio B(t->Wb)/B(t->Wq) and the top quark pair production cross section with the D0 detector at sqrt(s)=1.96 TeV

We present the first simultaneous measurement of the ratio of branching fractions, R=B(t->Wb)/B(t->Wq), with q being a d, s, or b quark, and the top quark pair production cross section sigma_ttbar in the lepton plus jets channel using 0.9 fb-1 of ppbar collision data at sqrt(s)=1.96 TeV collected with the D0 detector. We extract R and sigma_ttbar by analyzing samples of events with 0, 1 and >= 2 identified b jets. We measure R = 0.97 +0.09-0.08 (stat+syst) and sigma_ttbar = 8.18 +0.90-0.84 (stat+syst)} +/-0.50 (lumi) pb, in agreement with the standard model prediction.Comment: submitted to Phys.Rev.Letter

Search for charged Higgs bosons decaying to top and bottom quarks in ppbar collisions

We describe a search for production of a charged Higgs boson, q \bar{q'} -> H^+, reconstructed in the t\bar{b} final state in the mass range 180 <= M_{H^+} <= 300 GeV. The search was undertaken at the Fermilab Tevatron collider with a center-of-mass energy sqrt{s} = 1.96 TeV and uses 0.9 fb^{-1} of data collected with the D0 detector. We find no evidence for charged Higgs boson production and set upper limits on the production cross section in the Types I, II and III two-Higgs-doublet models (2HDMs). An excluded region in the (M_{H^+},tan\beta) plane for Type I 2HDM is presented.Comment: Submitted to Phys. Rev. Letter

Measurement of the B0_s semileptonic branching ratio to an orbitally excited D_s** state, Br(B0_s -> Ds1(2536) mu nu)

In a data sample of approximately 1.3 fb-1 collected with the D0 detector between 2002 and 2006, the orbitally excited charm state D_s1(2536) has been observed with a measured mass of 2535.7 +/- 0.6 (stat) +/- 0.5 (syst) MeV via the decay mode B0_s -> D_s1(2536) mu nu X. A first measurement is made of the branching ratio product Br(b(bar) -> D_s1(2536) mu nu X).Br(D_s1(2536)->D* K0_S). Assuming that D_s1(2536) production in semileptonic decay is entirely from B0_s, an extraction of the semileptonic branching ratio Br(B0_s -> D_s1(2536) mu nu X) is made.Comment: 7 pages, 2 figures, LaTeX, version with minor changes as accepted by Phys. Rev. Let

Measurement of the W boson mass

We present a measurement of the W boson mass in W -> ev decays using 1 fb^-1 of data collected with the D0 detector during Run II of the Fermilab Tevatron collider. With a sample of 499830 W -> ev candidate events, we measure M_W = 80.401 +- 0.043 GeV. This is the most precise measurement from a single experiment.Comment: As published in PR

Search for new fermions ("quirks") at the Fermilab Tevatron Collider

We report results of a search for particles with anomalously high ionization in events with a high transverse energy jet and large missing transverse energy in $2.4$ fb$^{-1}$ of integrated luminosity collected by the D0 experiment at the Fermilab Tevatron $p\bar{p}$ collider. Production of such particles (quirks) is expected in scenarios with extra QCD-like {\it SU(N)} sectors, and this study is the first dedicated search for such signatures. We find no evidence of a signal and set a lower mass limit of 107 ~GeV for the mass of a charged quirk with strong dynamics scale $\Lambda$ in the range from 10 keV to 1 MeV.Comment: submitted to Phys. Rev. Letter

Measurement of the forward-backward charge asymmetry and extraction of sin^2Theta^{eff}_W in ppbar -> Z/\gamma^{*}+X -> e+e+X events produced at \sqrt{s}=1.96 TeV

We present a measurement of the forward-backward charge asymmetry ($A_{FB}$) in $p\bar{p} \to Z/\gamma^{*}+X \to e^+e^-+X$ events at a center-of-mass energy of 1.96 TeV using 1.1 fb$^{-1}$ of data collected with the D0 detector at the Fermilab Tevatron collider. $A_{FB}$ is measured as a function of the invariant mass of the electron-positron pair, and found to be consistent with the standard model prediction. We use the $A_{FB}$ measurement to extract the effective weak mixing angle $sin^2Theta^{eff}_W = 0.2327 \pm 0.0018 (stat.) \pm 0.0006 (syst.)$.Comment: 7 Pages, 1 Figure, 3 Tables, Accepted by Phys. Rev. Let