The effects of forest degradation on soil carbon dynamics in the tropics

Plant-soil interactions and soil carbon dynamics are an essential part of soil function. Land-use change can affect the soil’s ability to accumulate and store carbon. Deforestation and conversion to croplands has decreased tree species cover and diversity in the tropics resulting in degraded and secondary forests becoming the dominant forested habitat. Understanding the effects of forest degradation on soil carbon dynamics is vital if we are to remediate these ecosystems under climate change. The overarching aim of this thesis was understanding how changes in tree and plant species composition at different levels of degradation affect soil carbon dynamics and litter decomposition in the old and neo-tropics using litter transplant experiments in the field. Malaysia is one of the two biggest producers of palm oil in the world with Indonesia. Borneo is a biodiversity hotspot, but this ecosystem is decreasing at an alarming rate. Sabah, in norther Malaysian Borneo is converting its tropical forest to oil palm plantations resulting in vast expanses of oil palm monocultures containing secondary forest fragments at various degrees of degradation. In Central America, the tree cover is also dominated by secondary forests and timber plantations; in Panama, only 21 % of the tree cover classified as intact forest and there are remediation projects in place to encourage reforestation of degraded landscapes into plantations using native timber species. The level of degradation in the habitats changed the microclimate which affected soil properties, microbial activity and litter decomposition. Litter properties also had an effect on the rate of litter decomposition and microbial activity. The loss of tree cover in the deforested habitats and monocultures resulted in lower microbial activity and decomposition rates whereas the secondary forests has similar microbial activity and decomposition rates as the old growth forests. Overall, my results suggest that mixed litter inputs are crucial for maintaining soil function and that tropical forest soils might be more resilient to change than expected

Litter Traits of Native and Non-Native Tropical Trees Influence Soil Carbon Dynamics in Timber Plantations in Panama

Tropical reforestation initiatives are widely recognized as a key strategy for mitigating rising atmospheric CO2 concentrations. Although rapid tree growth in young secondary forests and plantations sequesters large amounts of carbon (C) in biomass, the choice of tree species for reforestation projects is crucial, as species identity and diversity affect microbial activity and soil C cycling via plant litter inputs. The decay rate of litter is largely determined by its chemical and physical properties, and trait complementarity of diverse litter mixtures can produce non-additive effects, which facilitate or delay decomposition. Furthermore, microbial communities may preferentially decompose litter from native tree species (homefield advantage). Hence, information on how different tree species influence soil carbon dynamics could inform reforestation efforts to maximize soil C storage. We established a decomposition experiment in Panama, Central America, using mesocosms and litterbags in monoculture plantations of native species (Dalbergia retusa Hemsl. and Terminalia amazonia J.F.Gmel., Exell) or teak (Tectona grandis L.f.) to assess the influence of different litter types and litter mixtures on soil C dynamics. We used reciprocal litter transplant experiments to assess the homefield advantage and litter mixtures to determine facilitative or antagonistic effects on decomposition rates and soil respiration in all plantation types. Although litter properties explained some of the variation in decomposition, the microclimate and soil properties in the plantations also played an important role. Microbial biomass C and litter decomposition were lower in Tectona than in the native plantations. We observed non-additive effects of mixtures with Tectona and Dalbergia litter on both decomposition and soil respiration, but the effect depended on plantation type. Further, there was a homefield disadvantage for soil respiration in Tectona and Terminalia plantations. Our results suggest that tree species diversity plays an important role in the resilience of tropical soils and that plantations with native tree species could help maintain key processes involved in soil carbon sequestration

Litter inputs, but not litter diversity, maintain soil processes in degraded tropical forests — a cross-continental comparison

Land-use change in tropical forests can reduce biodiversity and ecosystem carbon (C) storage, but although changes in aboveground biomass C in human-modified tropical forests are well-documented, patterns in the dynamics and storage of C belowground are less well characterised. To address this, we used a reciprocal litter transplant experiment to assess litter decomposition and soil respiration under distinct litter types in forested or converted habitats in Panama, Central America, and in Sabah, Malaysian Borneo. The converted habitats comprised a large clearing on the Panama Canal and oil palm plantation in Borneo; forested habitats comprised a 60-year old secondary forest in Panama and a disturbed forest in Borneo that was selectively logged until 2008. In each habitat, we installed mesocosms and litterbags with litter collected from old-growth forest, secondary forest or an introduced species: Elaeis guineensis in Borneo and Saccharum spontaneum in Panama. We measured litter mass loss, soil respiration, and soil microbial biomass during nine months at each site. Decomposition differed markedly between habitat types and between forest vs. introduced litter, but the decay rates and properties of old-growth and secondary forest litters in the forest habitats were remarkably similar, even across continents. Slower decomposition of all litter types in the converted habitats was largely explained by microclimate, but the faster decay of introduced litter was linked to lower lignin content compared to the forest litter. Despite marked differences in litter properties and decomposition, there was no effect of litter type on soil respiration or microbial biomass. However, regardless of location, litter type, and differences in soil characteristics, we measured a similar decline in microbial activity and biomass in the absence of litter inputs. Interestingly, whereas microbial biomass and soil respiration increased substantially in response to litter inputs in the forested habitats and the converted habitat in Panama, there was little or no corresponding increase in the converted habitat in Borneo, indicating that soil recovery capacity had declined substantially in oil palm plantations. Overall, our results suggest that litter inputs are essential to preserve key soil processes, but litter diversity may be less important, especially in highly disturbed habitats

Altered litter inputs modify carbon and nitrogen storage in soil organic matter in a lowland tropical forest

Soil organic matter (SOM) in tropical forests is an important store of carbon (C) and nutrients. Although SOM storage could be affected by global changes via altered plant productivity, we know relatively little about SOM stabilisation and turnover in tropical forests compared to temperate systems. Here, we investigated changes in soil C and N within particle size fractions representing particulate organic matter (POM) and mineral-associated organic matter (MAOM) after 13 years of experimental litter removal (L−) and litter addition (L+) treatments in a lowland tropical forest. We hypothesized that reduced nitrogen (N) availability in L− plots would result in N-mining of MAOM, whereas long-term litter addition would increase POM, without altering the C:N ratio of SOM fractions. Overall, SOM-N declined more than SOM-C with litter removal, providing evidence of N-mining in the L− plots, which increased the soil C:N ratio. However, contrary to expectations, the C:N ratio increased most in the largest POM fraction, whereas the C:N ratio of MAOM remained unchanged. We did not observe the expected increases in POM with litter addition, which we attribute to rapid turnover of unprotected SOM. Measurements of ion exchange rates to assess changes in N availability and soil chemistry revealed that litter removal increased the mobility of ammonium-N and aluminium, whereas litter addition increased the mobility of nitrate-N and iron, which could indicate SOM priming in both treatments. Our study suggests that altered litter inputs affect multiple processes contributing to SOM storage and we propose potential mechanisms to inform future work

Bioavailability of Macro and Micronutrients Across Global Topsoils: Main Drivers and Global Change Impacts

Understanding the chemical composition of our planet\u27s crust was one of the biggest questions of the 20th century. More than 100 years later, we are still far from understanding the global patterns in the bioavailability and spatial coupling of elements in topsoils worldwide, despite their importance for the productivity and functioning of terrestrial ecosystems. Here, we measured the bioavailability and coupling of thirteen macro- and micronutrients and phytotoxic elements in topsoils (3–8 cm) from a range of terrestrial ecosystems across all continents (∼10,000 observations) and in response to global change manipulations (∼5,000 observations). For this, we incubated between 1 and 4 pairs of anionic and cationic exchange membranes per site for a mean period of 53 days. The most bioavailable elements (Ca, Mg, and K) were also amongst the most abundant in the crust. Patterns of bioavailability were biome-dependent and controlled by soil properties such as pH, organic matter content and texture, plant cover, and climate. However, global change simulations resulted in important alterations in the bioavailability of elements. Elements were highly coupled, and coupling was predictable by the atomic properties of elements, particularly mass, mass to charge ratio, and second ionization energy. Deviations from the predictable coupling-atomic mass relationship were attributed to global change and agriculture. Our work illustrates the tight links between the bioavailability and coupling of topsoil elements and environmental context, human activities, and atomic properties of elements, thus deeply enhancing our integrated understanding of the biogeochemical connections that underlie the productivity and functioning of terrestrial ecosystems in a changing world

Airborne DNA reveals predictable spatial and seasonal dynamics of fungi.

Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions1,2. To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores3. The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms4,5

Soil carbon dynamics are linked to tree species growth strategy in a naturally regenerating tropical forest

Secondary tropical forests are increasingly important for their role in the global carbon (C) balance as they can rapidly accumulate aboveground biomass C during regrowth. Substantial amounts of plant-derived carbon are also incorporated into the soil through decomposition processes, but our understanding of soil C dynamics during forest regrowth is limited. Secondary succession is characterised by a shift in tree functional groups from light-demanding to shade-tolerant species over time, which can influence rates of C turnover via differences in litter quality and by modifying the decomposition environment. Changes in decomposition processes in turn affect the amount of organic C stored in the soil or released to the atmosphere as CO2. Consequently, understanding how tree functional composition influences C turnover during decomposition could help us predict soil C storage during tropical forest regrowth. We experimentally explored the relationship between tree functional groups and soil C dynamics (decomposition and respiration) by conducting a litter decomposition experiment across a successional gradient of naturally regenerating tropical forest. We created litter mixtures representing tree communities differing in their shade tolerance, as well as a functionally diverse litter mixture, and observed litter mass loss and soil respiration as measures of C turnover over a 6 month period. Litter from light-demanding species decomposed faster than litter from shade-tolerant species, which was reflected in the pattern of soil respiration. There were no clear patterns of increasing or decreasing rates of litter decay or soil respiration with increasing forest age, but there was an interaction between stand age and litter type which influenced both decomposition and soil respiration rates. Interestingly, soil respiration from the functionally diverse litter mixture was significantly higher in the younger than older forest stands, and the functionally diverse litter mixture decayed more rapidly than expected in one of the younger stands. Our findings highlight the potential importance of functionally diverse plant inputs, as well as the interaction between local environmental attributes and litter type, for soil C dynamics in tropical forests

Bioavailability of macro and micronutrients across global topsoils:Main drivers and global change impacts

Understanding the chemical composition of our planet's crust was one of the biggest questions of the 20th century. More than 100 years later, we are still far from understanding the global patterns in the bioavailability and spatial coupling of elements in topsoils worldwide, despite their importance for the productivity and functioning of terrestrial ecosystems. Here, we measured the bioavailability and coupling of thirteen macro‐ and micronutrients and phytotoxic elements in topsoils (3–8 cm) from a range of terrestrial ecosystems across all continents (∼10,000 observations) and in response to global change manipulations (∼5,000 observations). For this, we incubated between 1 and 4 pairs of anionic and cationic exchange membranes per site for a mean period of 53 days. The most bioavailable elements (Ca, Mg, and K) were also amongst the most abundant in the crust. Patterns of bioavailability were biome‐dependent and controlled by soil properties such as pH, organic matter content and texture, plant cover, and climate. However, global change simulations resulted in important alterations in the bioavailability of elements. Elements were highly coupled, and coupling was predictable by the atomic properties of elements, particularly mass, mass to charge ratio, and second ionization energy. Deviations from the predictable coupling‐atomic mass relationship were attributed to global change and agriculture. Our work illustrates the tight links between the bioavailability and coupling of topsoil elements and environmental context, human activities, and atomic properties of elements, thus deeply enhancing our integrated understanding of the biogeochemical connections that underlie the productivity and functioning of terrestrial ecosystems in a changing world