A haploproficient interaction of the transaldolase paralogue NQM1 with the transcription factor VHR1 affects stationary phase survival and oxidative stress resistance.

BACKGROUND: Studying the survival of yeast in stationary phase, known as chronological lifespan, led to the identification of molecular ageing factors conserved from yeast to higher organisms. To identify functional interactions among yeast chronological ageing genes, we conducted a haploproficiency screen on the basis of previously identified long-living mutants. For this, we created a library of heterozygous Saccharomyces cerevisiae double deletion strains and aged them in a competitive manner. RESULTS: Stationary phase survival was prolonged in a double heterozygous mutant of the metabolic enzyme non-quiescent mutant 1 (NQM1), a paralogue to the pentose phosphate pathway enzyme transaldolase (TAL1), and the transcription factor vitamin H response transcription factor 1 (VHR1). We find that cells deleted for the two genes possess increased clonogenicity at late stages of stationary phase survival, but find no indication that the mutations delay initial mortality upon reaching stationary phase, canonically defined as an extension of chronological lifespan. We show that both genes influence the concentration of metabolites of glycolysis and the pentose phosphate pathway, central metabolic players in the ageing process, and affect osmolality of growth media in stationary phase cultures. Moreover, NQM1 is glucose repressed and induced in a VHR1 dependent manner upon caloric restriction, on non-fermentable carbon sources, as well as under osmotic and oxidative stress. Finally, deletion of NQM1 is shown to confer resistance to oxidizing substances. CONCLUSIONS: The transaldolase paralogue NQM1 and the transcription factor VHR1 interact haploproficiently and affect yeast stationary phase survival. The glucose repressed NQM1 gene is induced under various stress conditions, affects stress resistance and this process is dependent on VHR1. While NQM1 appears not to function in the pentose phosphate pathway, the interplay of NQM1 with VHR1 influences the yeast metabolic homeostasis and stress tolerance during stationary phase, processes associated with yeast ageing.We thank the Max Planck Society, Wellcome Trust (RG 093735/Z/10/Z), the ERC (Starting grant 260809), and the Isaac Newton Trust for funding. Markus A Keller is supported by an Erwin Schroedinger postdoctoral fellowship (FWF, Austria, J 3341). Markus Ralser is a Wellcome Trust Research Career Development and Wellcome-Beit Prize fellow.This is the final version of the article. It first appeared from BMC via http://dx.doi.org/10.1186/s12863-015-0171-

The Artemis European Tools for Estimating the Transport Pollutant Emissions

International engagements as well as impact studies require accurate and agreed methods for assessing pollutant emissions from the road transport. This ARTEMIS project - with 40 European research laboratories and a budget of about 9 M¿ was initiated for the setting-up and improvement of the European inventorying tools for application at different spatial and temporal scales and which should enable objectives comparisons and evaluations. These tools rely on experimental works and integrate most of the European related knowledge. They concern all transports modes in Europe, their pollutant emissions and fuel consumption as well as their characteristics of use. The ARTEMIS project resulted in many important scientific results and in a unique state of the art on the topic in Europe. We recapitulate the main lines of the project and its results: emission measurements, principles of the modelling, street-scale approach based on the definition of traffic situations, and the resulting tools. The tools application requires detailed and reliable data describing the traffic (vehicle fleets and activity, driving conditions, etc.). We highlight this aspect through the ARTEMIS application in Sweden, first country to implement the tools for emissions reporting, and through a road network based approach envisaged in Lille for impact studies at a city level.JRC.H.4-Transport and air qualit

Ray and wave chaos in asymmetric resonant optical cavities

Optical resonators are essential components of lasers and other wavelength-sensitive optical devices. A resonator is characterized by a set of modes, each with a resonant frequency omega and resonance width Delta omega=1/tau, where tau is the lifetime of a photon in the mode. In a cylindrical or spherical dielectric resonator, extremely long-lived resonances are due to `whispering gallery' modes in which light circulates around the perimeter trapped by total internal reflection. These resonators emit light isotropically. Recently, a new category of asymmetric resonant cavities (ARCs) has been proposed in which substantial shape deformation leads to partially chaotic ray dynamics. This has been predicted to give rise to a universal, frequency-independent broadening of the whispering-gallery resonances, and highly anisotropic emission. Here we present solutions of the wave equation for ARCs which confirm many aspects of the earlier ray-optics model, but also reveal interesting frequency-dependent effects characteristic of quantum chaos. For small deformations the lifetime is controlled by evanescent leakage, the optical analogue of quantum tunneling. We find that the lifetime is much shortened by a process known as `chaos-assisted tunneling'. In contrast, for large deformations (~10%) some resonances are found to have longer lifetimes than predicted by the ray chaos model due to `dynamical localization'.Comment: 4 pages RevTeX with 7 Postscript figure

Development of the Variable Dexterity Test: construction, reliability and validity

Background/Aims: This article introduces a dexterity test designed to assess individual types of dexterity used to carry out activities of daily living (ADL). The Variable Dexterity Test (VDT) was developed as part of a wider study, the broader aim being to fully understand dexterity and its effect on human-product interaction during ADL. This was done with a view to improve occupational therapy methods when assessing dexterity and general hand function. Methods: The control group consisted of 24 healthy participants. Estimates of reliability and validity were evaluated in this pilot study. Inter-rater and test-retest reliability were assessed using a one-way ANOVA. The validity of the test was estimated by correlating participants’ VDT scores with their proficiency to complete four ADL task actions and a standardised dexterity test (Purdue Pegboard Test). Results: The test produced consistent results among the control group with both a single assessor (test‑retest reliability) and multiple assessors (inter‑rater reliability). High correlations between participants’ VDT scores and proficiency to perform ADL were found for most of the subtests. There was also a high correlation between participants’ scores from the Purdue Pegboard Test and the VDT. Conclusions: The VDT proved to be a flexible, reliable and valid tool that assesses dexterity based on ability to carry out ADL. Validity and reliability estimates show encouraging values, which recognises that the VDT can be used as an accurate method to assess more than one type of dexterity.</p

Dopamine neuronal loss contributes to memory and reward dysfunction in a model of Alzheimer's disease

Alterations of the dopaminergic (DAergic) system are frequently reported in Alzheimer’s disease (AD) patients and are commonly linked to cognitive and non-cognitive symptoms. However, the cause of DAergic system dysfunction in AD remains to be elucidated. We investigated alterations of the midbrain DAergic system in the Tg2576 mouse model of AD, overexpressing a mutated human amyloid precursor protein (APPswe). Here, we found an age-dependent DAergic neuron loss in the ventral tegmental area (VTA) at pre-plaque stages, although substantia nigra pars compacta (SNpc) DAergic neurons were intact. The selective VTA DAergic neuron degeneration results in lower DA outflow in the hippocampus and nucleus accumbens (NAc) shell. The progression of DAergic cell death correlates with impairments in CA1 synaptic plasticity, memory performance and food reward processing. We conclude that in this mouse model of AD, degeneration of VTA DAergic neurons at pre-plaque stages contributes to memory deficits and dysfunction of reward processing

Phonon anomalies at the valence transition of SmS : An inelasticX-ray scattering study under pressure

The phonon dispersion curve of SmS under pressure was studied by inelastic x-ray scattering around the pressure-induced valence transition. A significant softening of the longitudinal acoustic modes propagating along the [111] direction was observed spanning a wide $q$ region from ($\frac{2\pi}{3a},\frac{2\pi}{3a},\frac{2\pi}{3a}$) up to the zone boundary as SmS becomes metallic. The largest softening occurs at the zone boundary and stays stable up to the highest measured pressure of 80 kbar while a gradual hardening of the low $q$ modes simultaneously appears. This phonon spectrum indicates favorable conditions for the emergence of pressure-induced superconductivity in SmS.Comment: 4 pages, 3 figure

Lessons Learned From Efforts To Restore Oyster Populations In Maryland And Virginia, 1990 To 2007

A century-long decline of the fishery for the Eastern oyster Crassostrea virginica (Gmelin, 1791) in Maryland and Virginia stimulated numerous efforts by federal, state, and nongovernmental agencies to restore oyster populations, with limited success. To learn from recent efforts, we analyzed records of restoration and monitoring activities undertaken between 1990 and 2007 by 12 such agencies. Of the 1,037 oyster bars (reefs, beds, or grounds) for which we obtained data, 43% experienced both restoration and monitoring, with the remaining experiencing either restoration or monitoring only. Restoration activities involved adding substrate (shell), transplanting hatchery or wild seed (juvenile oysters), bar cleaning, and bagless dredging. Of these, substrate addition and transplanting seed were common actions, with bar cleaning and bagless dredging relatively uncommon. Limited monitoring efforts, a lack of replicated postrestoration sampling, and the effects of harvest on some restored bars hinders evaluations of the effectiveness of restoration activities. Future restoration activities should have clearly articulated objectives and be coordinated among agencies and across bars, which should also be off limits to fishing. To evaluate restoration efforts, experimental designs should include replication, quantitative sampling, and robust sample sizes, supplemented by pre- and postrestoration monitoring

Do modifiable risk factors moderate the effect of APOE on cognitive decline?

This is the author accepted manuscript. The final version is available from Springer via the DOI in this recordBehavior Genetics Association 50th Annual Meeting, 26 June 2020. Onlin

The miswired brain: making connections from neurodevelopment to psychopathology

Developmental neurobiologists have made great progress in elucidating the molecular mechanisms underlying nervous system development. There has been less focus, however, on the consequences when these processes go wrong. As the evidence increases that mutations in neurodevelopmental genes are associated with major psychiatric disorders, defining these consequences assumes paramount importance in elucidating pathogenic mechanisms

A random cell motility gradient downstream of FGF controls elongation of amniote embryos

Vertebrate embryos are characterized by an elongated antero-posterior (AP) body axis, which forms by progressive cell deposition from a posterior growth zone in the embryo. Here, we used tissue ablation in the chicken embryo to demonstrate that the caudal presomitic mesoderm (PSM) has a key role in axis elongation. Using time-lapse microscopy, we analysed the movements of fluorescently labelled cells in the PSM during embryo elongation, which revealed a clear posterior-to-anterior gradient of cell motility and directionality in the PSM. We tracked the movement of the PSM extracellular matrix in parallel with the labelled cells and subtracted the extracellular matrix movement from the global motion of cells. After subtraction, cell motility remained graded but lacked directionality, indicating that the posterior cell movements associated with axis elongation in the PSM are not intrinsic but reflect tissue deformation. The gradient of cell motion along the PSM parallels the fibroblast growth factor (FGF)/mitogen-activated protein kinase (MAPK) gradient1, which has been implicated in the control of cell motility in this tissue2. Both FGF signalling gain- and loss-of-function experiments lead to disruption of the motility gradient and a slowing down of axis elongation. Furthermore, embryos treated with cell movement inhibitors (blebbistatin or RhoK inhibitor), but not cell cycle inhibitors, show a slower axis elongation rate. We propose that the gradient of random cell motility downstream of FGF signalling in the PSM controls posterior elongation in the amniote embryo. Our data indicate that tissue elongation is an emergent property that arises from the collective regulation of graded, random cell motion rather than by the regulation of directionality of individual cellular movements