4,008 research outputs found
Predicting Medical Subject Headings Based on Abstract Similarity and Citations to MEDLINE Records
We describe a classifier-enhanced nearest neighbor approach to assigning Medical Subject Headings (MeSH) to unlabeled documents using a combination of abstract similarities and direct citations to labeled MEDLINE records. The approach frames the classification problem by decomposing it into sets of siblings in the MeSH hierarchy (e.g., training a classifier for predicting "Heterocyclic Compounds, 2-Ring" vs. other "Heterocyclic Compounds"). Preliminary experiments using a small but diverse set of MeSH terms shows the highest performance when using both abstracts and citations compared to each alone, and coupled with a non-naive classifier: 90+% precision and recall with 10-fold cross-validation. NLM's Medical Text Indexer (MTI) tool achieves similar overall performance but varies more across the terms tested. For example, MTI performs better on "Heterocyclic Compounds, 2-Ring", while our approach performs better on Alzheimer Disease and Neuroimaging. Our approach can be applied broadly to documents with abstracts that are similar to (or cite) MEDLINE abstracts, which would help linking and searching across bibliographic databases beyond MEDLINE.Ope
Incorporating Silages into Preweaned Dairy Calf Diets
Supplementing forage to preweaned calves has shown some positive effects, such as stabilization of the rumen environment, limiting abnormal behaviors, and increasing starter intake. However, dry forages can be limited and cost prohibitive in some areas of the world. Contrastingly, ensiled forages are commonly found on most dairy farms and are low cost. Therefore, the objective of this review was to focus specifically on ensiled forages and how they affect preweaned calves. There are few studies that have focused on providing ensiled forages and most of them have used corn silage. Although impacts on rumen development and nutrient digestibility have been variable, feed intake and efficiency were not affected in most reviewed studies. Growth and health parameters were also either not affected or improved. Therefore, with careful silage feeding management, the supplementation of ensiled feeds may be used to provide similar benefits of dry forages to preweaned dairy calves
Extensive Spectroscopy and Photometry of the Type IIP Supernova 2013ej
We present extensive optical (, , and open CCD) and
near-infrared () photometry for the very nearby Type IIP SN ~2013ej
extending from +1 to +461 days after shock breakout, estimated to be MJD
. Substantial time series ultraviolet and optical spectroscopy
obtained from +8 to +135 days are also presented. Considering well-observed SNe
IIP from the literature, we derive bolometric calibrations from
and unfiltered measurements that potentially reach 2\% precision with a
color-dependent correction. We observe moderately strong Si II
as early as +8 days. The photospheric velocity () is
determined by modeling the spectra in the vicinity of Fe II
whenever observed, and interpolating at photometric epochs based on a
semianalytic method. This gives km s at +50
days. We also observe spectral homogeneity of ultraviolet spectra at +10--12
days for SNe IIP, while variations are evident a week after explosion. Using
the expanding photosphere method, from combined analysis of SN 2013ej and SN
2002ap, we estimate the distance to the host galaxy to be
Mpc, consistent with distance estimates from other methods. Photometric and
spectroscopic analysis during the plateau phase, which we estimated to be
days long, yields an explosion energy of
ergs, a final pre-explosion progenitor mass of ~M and a
radius of ~R. We observe a broken exponential profile beyond
+120 days, with a break point at + days. Measurements beyond this
break time yield a Ni mass of ~M.Comment: 29 pages, 23 figures, 15 tables, Published in The Astrophisical
Journa
Influence of subunit structure on the oligomerization state of light harvesting complexes: a free energy calculation study
Light harvesting complexes 2 (LH2) from Rhodospirillum (Rs.) molischianum and
Rhodopseudomonas (Rps.) acidophila form ring complexes out of eight or nine
identical subunits, respectively. Here, we investigate computationally what
factors govern the different ring sizes. Starting from the crystal structure
geometries, we embed two subunits of each species into their native
lipid-bilayer/water environment. Using molecular dynamics simulations with
umbrella sampling and steered molecular dynamics, we probe the free energy
profiles along two reaction coordinates, the angle and the distance between two
subunits. We find that two subunits prefer to arrange at distinctly different
angles, depending on the species, at about 42.5 deg for Rs. molischianum and at
about 38.5 deg for Rps. acidophila, which is likely to be an important factor
contributing to the assembly into different ring sizes. Our calculations
suggest a key role of surface contacts within the transmembrane domain in
constraining these angles, whereas the strongest interactions stabilizing the
subunit dimers are found in the C-, and to a lesser extent, N-terminal domains.
The presented computational approach provides a promising starting point to
investigate the factors contributing to the assembly of protein complexes, in
particular if combined with modeling of genetic variants.Comment: 28 pages, 7 figures, LaTeX2e - requires elsart.cls (included),
submitted to Chemical Physic
Observations of the Optical Counterpart to XTE J1118+480 During Outburst by the ROTSE-I Telescope
The X-ray nova XTE J1118+480 exhibited two outbursts in the early part of
2000. As detected by the Rossi X-ray Timing Explorer (RXTE), the first outburst
began in early January and the second began in early March. Routine imaging of
the northern sky by the Robotic Optical Transient Search Experiment (ROTSE)
shows the optical counterpart to XTE J1118+480 during both outbursts. These
data include over 60 epochs from January to June 2000. A search of the ROTSE
data archives reveal no previous optical outbursts of this source in selected
data between April 1998 and January 2000. While the X-ray to optical flux ratio
of XTE J1118+480 was low during both outbursts, we suggest that they were full
X-ray novae and not mini-outbursts based on comparison with similar sources.
The ROTSE measurements taken during the March 2000 outburst also indicate a
rapid rise in the optical flux that preceded the X-ray emission measured by the
RXTE by approximately 10 days. Using these results, we estimate a pre-outburst
accretion disk inner truncation radius of 1.2 x 10^4 Schwarzschild radii.Comment: 9 pages, 1 table, 2 figure
Structure in the Dusty Debris around Vega
We present images of the Vega system obtained with the IRAM Plateau de Bure
interferometer at 1.3 millimeters wavelength with sub-mJy sensitivity and
\sim2\farcs5 resolution (about 20 AU). These observations clearly detect the
stellar photosphere and two dust emission peaks offset from the star by
9\farcs5 and 8\farcs0 to the northeast and southwest, respectively. These
offset emission peaks are consistent with the barely resolved structure visible
in previous submillimeter images, and they account for a large fraction of the
dust emission. The presence of two dust concentrations at the observed
locations is plausibly explained by the dynamical influence of an unseen planet
of a few Jupiter masses in a highly eccentric orbit that traps dust in
principle mean motion resonances.Comment: 13 pages, 3 figures, accepted by ApJ
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis
Background: Streptococcus suis is a zoonotic pathogen that infects pigs and can occasionally cause serious infections in
humans. S. suis infections occur sporadically in human Europe and North America, but a recent major outbreak has been
described in China with high levels of mortality. The mechanisms of S. suis pathogenesis in humans and pigs are poorly
understood.
Methodology/Principal Findings: The sequencing of whole genomes of S. suis isolates provides opportunities to
investigate the genetic basis of infection. Here we describe whole genome sequences of three S. suis strains from the same
lineage: one from European pigs, and two from human cases from China and Vietnam. Comparative genomic analysis was
used to investigate the variability of these strains. S. suis is phylogenetically distinct from other Streptococcus species for
which genome sequences are currently available. Accordingly, ,40% of the ,2 Mb genome is unique in comparison to
other Streptococcus species. Finer genomic comparisons within the species showed a high level of sequence conservation;
virtually all of the genome is common to the S. suis strains. The only exceptions are three ,90 kb regions, present in the two
isolates from humans, composed of integrative conjugative elements and transposons. Carried in these regions are coding
sequences associated with drug resistance. In addition, small-scale sequence variation has generated pseudogenes in
putative virulence and colonization factors.
Conclusions/Significance: The genomic inventories of genetically related S. suis strains, isolated from distinct hosts and
diseases, exhibit high levels of conservation. However, the genomes provide evidence that horizontal gene transfer has
contributed to the evolution of drug resistance
A statistical interpretation of the correlation between intermediate mass fragment multiplicity and transverse energy
Multifragment emission following Xe+Au collisions at 30, 40, 50 and 60 AMeV
has been studied with multidetector systems covering nearly 4-pi in solid
angle. The correlations of both the intermediate mass fragment and light
charged particle multiplicities with the transverse energy are explored. A
comparison is made with results from a similar system, Xe+Bi at 28 AMeV. The
experimental trends are compared to statistical model predictions.Comment: 7 pages, submitted to Phys. Rev.
Advances in prevention and therapy of neonatal dairy calf diarrhoea : a systematical review with emphasis on colostrum management and fluid therapy
Neonatal calf diarrhoea remains the most common cause of morbidity and mortality in preweaned dairy calves worldwide. This complex disease can be triggered by both infectious and non-infectious causes. The four most important enteropathogens leading to neonatal dairy calf diarrhoea are Escherichia coli, rota-and coronavirus, and Cryptosporidium parvum. Besides treating diarrhoeic neonatal dairy calves, the veterinarian is the most obvious person to advise the dairy farmer on prevention and treatment of this disease. This review deals with prevention and treatment of neonatal dairy calf diarrhoea focusing on the importance of a good colostrum management and a correct fluid therapy
Computational modeling of ovarian cancer dynamics suggests optimal strategies for therapy and screening
High-grade serous tubo-ovarian carcinoma (HGSC) is a major cause of cancer-related death. Treatment is not uniform, with some patients undergoing primary debulking surgery followed by chemotherapy (PDS) and others being treated directly with chemotherapy and only having surgery after three to four cycles (NACT). Which strategy is optimal remains controversial. We developed a mathematical framework that simulates hierarchical or stochastic models of tumor initiation and reproduces the clinical course of HGSC. After estimating parameter values, we infer that most patients harbor chemoresistant HGSC cells at diagnosis and that, if the tumor burden is not too large and complete debulking can be achieved, PDS is superior to NACT due to better depletion of resistant cells. We further predict that earlier diagnosis of primary HGSC, followed by complete debulking, could improve survival, but its benefit in relapsed patients is likely to be limited. These predictions are supported by primary clinical data from multiple cohorts. Our results have clear implications for these key issues in HGSC management
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