Defining quantitative stream disturbance gradients and the additive role of habitat variation to explain macroinvertebrate taxa richness

Most studies dealing with the use of ecological indicators and other applied ecological research rely on some definition or concept of what constitutes least-, intermediate- and most-disturbed condition. Currently, most rigorous methodologies designed to define those conditions are suited to large spatial extents (nations, ecoregions) and many sites (hundreds to thousands). The objective of this study was to describe a methodology to quantitatively define a disturbance gradient for 40 sites in each of two small southeastern Brazil river basins. The assessment of anthropogenic disturbance experienced by each site was based solely on measurements strictly related to the intensity and extent of anthropogenic pressures. We calculated two indices: one concerned site-scale pressures and the other catchment-scale pressures. We combined those two indices into a single integrated disturbance index (IDI) because disturbances operating at both scales affect stream biota. The local- and catchment-scale disturbance indices were weakly correlated in the two basins (r = 0.21 and 0.35) and both significantly (p \u3c 0.05) reduced site EPT (insect orders Ephemeroptera, Plecoptera, Trichoptera) richness. The IDI also performed well in explaining EPT richness in the basin that presented the stronger disturbance gradient (R2 = 0.39, p \u3c 0.001). Natural habitat variability was assessed as a second source of variation in EPT richness. Stream size and microhabitats were the key habitat characteristics not related to disturbances that enhanced the explanation of EPT richness over that attributed to the IDI. In both basins the IDI plus habitat metrics together explained around 50% of EPT richness variation. In the basin with the weaker disturbance gradient, natural habitat explained more variation in EPT richness than did the IDI, a result that has implications for biomonitoring studies. We conclude that quantitatively defined disturbance gradients offer a reliable and comprehensive characterization of anthropogenic pressure that integrates data from different spatial scales

Jewels across the Landscape: Monitoring and Assessing the Quality of Lakes and Reservoirs in the United States

An early naturalist described lakes as “jewels” across the landscape and indeed they were…at the end of the nineteenth century. As we settled the country and began to utilize the lake resource for our needs, things changed. Additionally, our needs for water brought about the construction of impoundments from ice ponds to small stock ponds up to mainstem impoundments along our major rivers. The lake resource in the United States now includes natural lakes in our northern tier of states, unique physiographic regions such as Florida and the Sand Hills of Nebraska, and the mountainous regions, and impoundments scattered across the entire landscape. In this chapter, we will describe efforts by an unique partnership between the individual states and tribal nations of the USA and the US Environmental Protection Agency to monitor and assess these systems. These efforts go beyond single water quality (chemistry) issues and include assessments targeting the goal of the Clean Water Act, namely, restoring, maintaining, and protecting the chemical, physical, and biological integrity of the nation’s lakes and reservoirs

Rivers and Streams: Upgrading Monitoring of the Nation’s Freshwater Resources - Meeting the Spirit of the Clean Water Act

The goal of the Clean Water Act (CWA) is to restore and maintain the chemical, physical and biological integrity of the waters in the United States. Much of the monitoring and assessment is reasonably delegated to the States to monitor and report the condition of their water to Congress through the Environmental Protection Agency. States have historically been fully occupied in monitoring the most egregious water quality problems along with select high priority water bodies. This approach, while addressing State priorities with finite resources, does not capture the full spectrum and scope of water quality conditions within and across State boundaries. Hence, the reporting on progress in meeting the goals of the CWA has not been realized. In this chapter, we describe the partnership between EPA, the States and Tribes to remedy this information gap for rivers and streams. Filling this gap requires both improved monitoring designs to reflect conditions across all waters as well as the expansion of indicators to move beyond water chemistry to include all three elements of the CWA goal—chemical, physical and biological integrity

Formation of atypical podosomes in extravillous trophoblasts regulates extracellular matrix degradation

Throughout pregnancy the cytotrophoblast, the stem cell of the placenta, gives rise to the differentiated forms of trophoblasts. The two main cell lineages are the syncytiotrophoblast and the invading extravillous trophoblast. A successful pregnancy requires extravillous trophoblasts to migrate and invade through the decidua and then remodel the maternal spiral arteries. Many invasive cells use specialised cellular structures called invadopodia or podosomes in order to degrade extracellular matrix. Despite being highly invasive cells, the presence of invadapodia or podosomes has not previously been investigated in trophoblasts. In this study these structures have been identified and characterised in extravillous trophoblasts. The role of specialised invasive structures in trophoblasts in the degradation of the extracellular matrix was compared with well characterised podosomes and invadopodia in other invasive cells and the trophoblast specific structures were characterised by using a sensitive matrix degradation assay which enabled visualisation of the structures and their dynamics. We show trophoblasts form actin rich protrusive structures which have the ability to degrade the extracellular matrix during invasion. The degradation ability and dynamics of the structures closely resemble podosomes, but have unique characteristics that have not previously been described in other cell types. The composition of these structures does not conform to the classic podosome structure, with no distinct ring of plaque proteins such as paxillin or vinculin. In addition, trophoblast podosomes protrude more deeply into the extracellular matrix than established podosomes, resembling invadopodia in this regard. We also show several significant pathways such as Src kinase, MAPK kinase and PKC along with MMP-2 and 9 as key regulators of extracellular matrix degradation activity in trophoblasts, while podosome activity was regulated by the rigidity of the extracellular matrix

Non-wadeable river bioassessment: spatial variation of benthic diatom assemblages in Pacific Northwest rivers, USA

Current bioassessment efforts are focused on small wadeable streams, at least partly because assessing ecological conditions in non-wadeable large rivers poses many additional challenges. In this study, we sampled 20 sites in each of seven large rivers in the Pacific Northwest, USA, to characterize variation of benthic diatom assemblages among and within rivers relative to environmental conditions. Analysis of similarity (ANOSIM) indicated that diatom assemblages were significantly different among all the seven rivers draining different ecoregions. Longitudinal patterns in diatom assemblages showed river-specific features. Bray–Curtis dissimilarity index values did not increase as a function of spatial distance among the sampled reaches within any river but the Malheur. Standardized Mantel r of association between assemblage similarity and spatial distance among sites ranged from a high of 0.69 (Malheur) to a low of 0.18 (Chehalis). In the Malheur River, % monoraphids, nitrogen-tolerant taxa, and beta-mesosaprobous taxa all decreased longitudinally while % motile taxa, especially Nitzschia, showed an opposite trend, reflecting a strong in-stream water quality gradient. Similar longitudinal trends in water quality were observed in other rivers but benthic diatom assemblages showed either weak response patterns or no patterns. Our study indicated that benthic diatom assemblages can clearly reflect among-river factors. The relationships between benthic diatom assemblages and water quality within each river may depend on the strength of the water quality gradients, interactive effects of water quality and habitat conditions, and diatom sampling design.Keywords: River littoral zones, Pacific Northwest, Non-wadeable rivers, Benthic diatomsKeywords: River littoral zones, Pacific Northwest, Non-wadeable rivers, Benthic diatom

Multi-scale assessment of human-induced changes to Amazonian instream habitats

Context Land use change and forest degradation have myriad effects on tropical ecosystems. Yet their consequences for low-order streams remain very poorly understood, including in the world´s largest freshwater basin, the Amazon. Objectives Determine the degree to which physical and chemical characteristics of the instream habitat of low-order Amazonian streams change in response to past local- and catchment-level anthropogenic disturbances. Methods To do so, we collected field instream habitat (i.e., physical habitat and water quality) and landscape data from 99 stream sites in two eastern Brazilian Amazon regions. We used random forest regression trees to assess the relative importance of different predictor variables in determining changes in instream habitat response variables. Results Multiple drivers, operating at multiple spatial scales, were important in determining changes in the physical habitat and water quality of the sites. Although we found few similarities in modelled relationships between the two regions, we observed non-linear responses of specific instream characteristics to landscape change; for example 20 % of catchment deforestation resulted in consistently warmer streams. Conclusions Our results highlight the importance of local riparian and catchment-scale forest cover in shaping instream physical environments, but also underscore the importance of other land use changes and activities, such as road crossings and upstream agriculture intensification. In contrast to the property-scale focus of the Brazilian Forest code, which governs environmental regulations on private land, our results reinforce the importance of catchment-wide management strategies to protect stream ecosystem integrity

Is the diet of a typical shredder related to the physical habitat of headwater streams in the Brazilian Cerrado?

Macroinvertebrates are important for processing leaf detritus in temperate streams, but studies about their role in tropical streams often present conflicting results. Via digestive tract analyses, we assessed the diets of Phylloicus sp. larvae (Trichoptera: Calamoceratidae), collected from streams of two southeastern Brazil river basins (Araguari, Sao Francisco). We classified gut contents as coarse particulate organic matter (CPOM), fine particulate organic matter (FPOM), algae, animal tissue, vascular plant tissue and mineral material. We hypothesized that the diets of Phylloicus larvae would be related to the physical habitat of the streams (e.g., riparian vegetation, organic matter availability and morphological characteristics), larval size and river basin. Although FPOM content predominated in both basins, we found greater CPOM content in Phylloicus larvae of Upper Sao Francisco sites, and this food item was related to greater riparian vegetation canopy density. The FPOM content was greater in larvae of Upper Araguari sites, and this food item was correlated with greater instream brush cover. Algae, animal tissue, vascular plant tissue and mineral material were very rare in the digestive tracts, and therefore could not be explained. These results indicate the importance of riparian vegetation structure in modulating feeding habitats of macroinvertebrates. We conclude that the Phylloicus larvae had more flexibility in what they eat than we might expect based on their traditional classification as shredders. Therefore, trusting in published classifications, ignoring regional or local differences, may be inaccurate. Instead, regional studies of feeding habits are needed for accurate classifications of invertebrate taxa into trophic guilds

Importance of environmental factors for the richness and distribution of benthic macroinvertebrates in tropical headwater streams

An understanding of the interactions among local environmental factors (e.g., physical habitat and water quality) and aquatic assemblages is essential to conserve biodiversity in tropical and subtropical headwater streams. We evaluated the relative importance of multiple physical and chemical habitat variables that influence the richness of Ephemeroptera, Plecoptera, and Trichoptera (EPT) assemblages in wadeable Brazilian Cerrado (savanna) streams. We sampled macroinvertebrate assemblages and quantified physical and chemical habitat in 79 randomly selected sites in 2 Cerrado basins in southeastern Brazil. The environmental variables selected by multiple regression models (MLRs) via corrected Akaike Information Criteria (AICc) contributed significantly to variation in EPT taxon richness. The variance explained by physical-habitat variables was slightly greater in the Upper São Francisco Basin (adjusted R² = 0.53) than in the Upper Araguari Basin (adjusted R² = 0.46), and both were greater than the variance explained by a combined basin model (adjusted R² = 0.39). Physical-habitat variables were more important than water-quality variables in structuring EPT genera in streams with catchments dominated by agriculture or pasture land uses. Regional models can be improved by incorporating basin-specific information to refine biological assessments and to provide better understanding of the interactions that maintain biodiversity in stream networks.Keywords: Hydromorphology, Physical habitat, Cerrado headwater streams, EPT assemblages, Macroinvertebrate bioindicators, Stream conservatio

The relative influence of catchment and site variables on fish and macroinvertebrate richness in cerrado biome streams

Landscape and site-scale data analyses aid the interpretation of biological data and thereby help us develop more cost-effective natural resource management strategies. Our study focused on environmental influences on stream assemblages and we evaluated how three classes of environmental variables (geophysical landscape, land use and cover, and site habitat), influence fish and macroinvertebrate assemblage richness in the Brazilian Cerrado biome. We analyzed our data through use of multiple linear regression (MLR) models using the three classes of predictor variables alone and in combination. The four MLR models explained dissimilar amounts of benthic macroinvertebrate taxa richness (geophysical landscape R² ≈ 35%, land use and cover R² ≈ 28%, site habitat R² ≈ 36%, and combined R² ≈ 51%). For fish assemblages, geophysical landscape, land use and cover, site habitat, and combined models explained R² ≈ 28%, R² ≈ 10%, R² ≈ 31%, and R² ≈ 47% of the variability in fish species richness, respectively. We conclude that (1) environmental variables differed in the degree to which they explain assemblage richness, (2) the amounts of variance in assemblage richness explained by geophysical landscape and site habitat were similar, (3) the variables explained more variability in macroinvertebrate taxa richness than in fish species richness, and (4) all three classes of environmental variables studied were useful for explaining assemblage richness in Cerrado headwater streams. These results help us to understand the drivers of assemblage patterns at regional scales in tropical areas.Keywords: Anthropogenic pressures, Biological diversity, Multiple linear regression models, Brazil, Savanna, Physical habitat structure, Streams, Landscape ecology, Partition of varianceKeywords: Anthropogenic pressures, Biological diversity, Multiple linear regression models, Brazil, Savanna, Physical habitat structure, Streams, Landscape ecology, Partition of varianc

Brain structural covariance networks in obsessive-compulsive disorder: a graph analysis from the ENIGMA Consortium.

Brain structural covariance networks reflect covariation in morphology of different brain areas and are thought to reflect common trajectories in brain development and maturation. Large-scale investigation of structural covariance networks in obsessive-compulsive disorder (OCD) may provide clues to the pathophysiology of this neurodevelopmental disorder. Using T1-weighted MRI scans acquired from 1616 individuals with OCD and 1463 healthy controls across 37 datasets participating in the ENIGMA-OCD Working Group, we calculated intra-individual brain structural covariance networks (using the bilaterally-averaged values of 33 cortical surface areas, 33 cortical thickness values, and six subcortical volumes), in which edge weights were proportional to the similarity between two brain morphological features in terms of deviation from healthy controls (i.e. z-score transformed). Global networks were characterized using measures of network segregation (clustering and modularity), network integration (global efficiency), and their balance (small-worldness), and their community membership was assessed. Hub profiling of regional networks was undertaken using measures of betweenness, closeness, and eigenvector centrality. Individually calculated network measures were integrated across the 37 datasets using a meta-analytical approach. These network measures were summated across the network density range of K = 0.10-0.25 per participant, and were integrated across the 37 datasets using a meta-analytical approach. Compared with healthy controls, at a global level, the structural covariance networks of OCD showed lower clustering (P < 0.0001), lower modularity (P < 0.0001), and lower small-worldness (P = 0.017). Detection of community membership emphasized lower network segregation in OCD compared to healthy controls. At the regional level, there were lower (rank-transformed) centrality values in OCD for volume of caudate nucleus and thalamus, and surface area of paracentral cortex, indicative of altered distribution of brain hubs. Centrality of cingulate and orbito-frontal as well as other brain areas was associated with OCD illness duration, suggesting greater involvement of these brain areas with illness chronicity. In summary, the findings of this study, the largest brain structural covariance study of OCD to date, point to a less segregated organization of structural covariance networks in OCD, and reorganization of brain hubs. The segregation findings suggest a possible signature of altered brain morphometry in OCD, while the hub findings point to OCD-related alterations in trajectories of brain development and maturation, particularly in cingulate and orbitofrontal regions