Correlation of caveolin-1 expression with microlymphatic vessel density in colorectal adenocarcinoma tissues and its correlation with prognosis

AbstractObjectiveTo study the expression of caveolin-1 in colorectal adenocarcinoma tissues and its correlation with microlymphatic vessel density (LMVD), and to investigate the clinical pathological prognostic significance of caveolin-1 and LMVD in patients with colorectal cancer.MethodsThe expression of caveolin-1 and LMVD in 45 specimens of normal colorectal tissues, and 90 specimens of colorectal adenocarcinoma tissues were detected by immunohistochemistry technique. The correlation between their expression and the clinicopathologic features was analyzed. Multivariable Cox regression was used to analyze the association between the laboratory indices and overall survival time.ResultsThe positive rates of caveolin-1 in colorectal adenocarcinoma tissues were significantly higher than those in normal colorectal tissues (P < 0.01). LMVD in colorectal adenocarcinoma tissues were significantly higher than those in normal colorectal tissues (P < 0.01). Mean LMVD in group with caveolin-1 positive was significantly higher than in that with caveolin-1 negative. The median survival time was 26.7 months. Cox regression analysis showed that the caveolin-1 expression, invation depth, lymph node metastasis, TNM stage, liver metastasis and LMVD were independent risk factors of overall survival time of patients with colorectal carcinoma.ConclusionsCaveolin-1 may contribute to the lymphangiogenesis in the tumor. During the occurrence and development of colorectal adenocarcinoma, there is a close relationship between the expression of caveolin-1 and lymphatic microvessel of tumor. Caveolin-1 expression and microlymphatic vessel density are significant prognostic value of colorectal carcinoma

A Genetic Algorithm and Fuzzy Logic Approach for Video Shot Boundary Detection

This paper proposed a shot boundary detection approach using Genetic Algorithm and Fuzzy Logic. In this, the membership functions of the fuzzy system are calculated using Genetic Algorithm by taking preobserved actual values for shot boundaries. The classification of the types of shot transitions is done by the fuzzy system. Experimental results show that the accuracy of the shot boundary detection increases with the increase in iterations or generations of the GA optimization process. The proposed system is compared to latest techniques and yields better result in terms of F1score parameter

Towards 21-cm Intensity Mapping at z=2.28z=2.28 with uGMRT using the Tapered Gridded Estimator I: Foreground Avoidance

The post-reionization $(z \le 6)$ neutral hydrogen (HI) 21-cm intensity mapping signal holds the potential to probe the large scale structures, study the expansion history and constrain various cosmological parameters. Here we apply the Tapered Gridded Estimator (TGE) to estimate $P(k_{\perp},k_{\parallel})$ the power spectrum of the $z = 2.28$ $(432.8\, {\rm MHz})$ redshifted 21-cm signal using a $24.4\,{\rm MHz}$ sub-band drawn from uGMRT Band 3 observations of European Large-Area ISO Survey-North 1 (ELAIS-N1). The TGE allows us to taper the sky response which suppresses the foreground contribution from sources in the periphery of the telescope's field of view. We apply the TGE on the measured visibility data to estimate the multi-frequency angular power spectrum (MAPS) $C_{\ell}(\Delta\nu)$ from which we determine $P(k_{\perp},k_{\parallel})$ using maximum-likelihood which naturally overcomes the issue of missing frequency channels (55 \% here). The entire methodology is validated using simulations. For the data, using the foreground avoidance technique, we obtain a $2\,\sigma$ upper limit of $\Delta^2(k) \le (133.97)^2 \, {\rm mK}^{2}$ for the 21-cm brightness temperature fluctuation at $k = 0.347 \, \textrm{Mpc}^{-1}$. This corresponds to $[\Omega_{\rm HI}b_{\rm HI}] \le 0.23$, where $\Omega_{\rm HI}$ and $b_{\rm HI}$ respectively denote the cosmic \HI mass density and the \HI bias parameter. A previous work has analyzed $8 \, {\rm MHz}$ of the same data at $z=2.19$, and reported $\Delta^{2}(k) \le (61.49)^{2} \, {\rm mK}^{2}$ and $[\Omega_{\rm HI} b_{\rm HI}] \le 0.11$ at $k=1 \, {\rm Mpc}^{-1}$. The upper limits presented here are still orders of magnitude larger than the expected signal corresponding to $\Omega_{\rm HI} \sim 10^{-3}$ and $b_{\rm HI} \sim 2$.Comment: 13 pages, 11 figures, accepted for publication in MNRA

Reduction of seafood processing wastewater using technologies enhanced by swim–bed technology

The increasing growth of the seafood processing industries considerably requires more industrial process activities and water consumption. It is estimated that approximately 10–40 m3 of wastewater is generated from those industries for processing one-tonne of raw materials. Due to limitations and regulations in natural resources utilization, a suitable and systematic wastewater treatment plant is very important to meet rigorous discharge standards. As a result of food waste biodegradability, the biological treatment and some extent of swim-bed technology, including a novel acryl-fibre (biofilm) material might be used effectively to meet the effluent discharge criteria. This chapter aims to develop understanding on current problems and production of the seafood wastewater regarding treatment efficiency and methods of treatment

Compressive properties of min-mod-type limiters in modelling shockwave-containing flows

The long-ignored compressive properties of Min-mod-type limiter is investigated in this manuscript by demonstrating its potential in numerically modelling shockwave-containing flows, especially in shock wave/boundary layer interaction (SWBLI) problems. Theoretical studies were firstly performed based on Sweby’s total variation diminishing (TVD) limiter region and Spekreijse’s monotonicity-preserving limiter region to indicate Min-mod-type limiters’ compressive properties. The influence of limiters on the solution accuracy was evaluated using a hybrid-order analysis method based on the grid-independent study in three typical shockwave-containing flows. The conclusions are that, Min-mod-type limiter can be utilized as a dissipative and/or compressive limiter, but depending on the reasonable value of the compression parameter. The compressive Min-mod limiter tends to be more attractive in modelling shockwave-containing flows as compared to other commonly preferred limiters because of its stable computational process and its high-resolution predictions. However, the compressive Min-mod limiter may suffer from its slightly poor convergence, as that observed in other commonly accepted smooth limiters in modelling SWBLI problems. © 2020, The Author(s)

Osteoarticular Infection in Three Young Thoroughbred Horses Caused by a Novel Gram Negative Cocco-Bacillus

© 2020 Bernard J. Hudson et al. We describe three cases of osteoarticular infection (OAI) in young thoroughbred horses in which the causative organism was identified by MALDI-TOF as Kingella species. The pattern of OAI resembled that reported with Kingella infection in humans. Analysis by 16S rRNA PCR enabled construction of a phylogenetic tree that placed the isolates closer to Simonsiella and Alysiella species, rather than Kingella species. Average nucleotide identity (ANI) comparison between the new isolate and Kingella kingae and Alysiella crassa however revealed low probability that the new isolate belonged to either of these species. This preliminary analysis suggests the organism isolated is a previously unrecognised species

Phylogenomics: Gene Duplication, Unrecognized Paralogy and Outgroup Choice

Comparative genomics has revealed the ubiquity of gene and genome duplication and subsequent gene loss. In the case of gene duplication and subsequent loss, gene trees can differ from species trees, thus frequent gene duplication poses a challenge for reconstruction of species relationships. Here I address the case of multi-gene sets of putative orthologs that include some unrecognized paralogs due to ancestral gene duplication, and ask how outgroups should best be chosen to reduce the degree of non-species tree (NST) signal. Consideration of expected internal branch lengths supports several conclusions: (i) when a single outgroup is used, the degree of NST signal arising from gene duplication is either independent of outgroup choice, or is minimized by use of a maximally closely related post-duplication (MCRPD) outgroup; (ii) when two outgroups are used, NST signal is minimized by using one MCRPD outgroup, while the position of the second outgroup is of lesser importance; and (iii) when two outgroups are used, the ability to detect gene trees that are inconsistent with known aspects of the species tree is maximized by use of one MCRPD, and is either independent of the position of the second outgroup, or is maximized for a more distantly related second outgroup. Overall, these results generalize the utility of closely-related outgroups for phylogenetic analysis

Script Concordance Tests: Guidelines for Construction

International audienc

The "Maggie" filament : physical properties of a giant atomic cloud

Funding: H.B. and J.D.S. further acknowledge funding from the European Research Council under the Horizon 2020 Framework Program via the ERC Consolidator Grant CSF-648505. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No. 851435). European Research Council via the ERC Synergy Grant ECOGAL (grant 855130). R.J.S. is funded by an STFC ERF (grant ST/N00485X/1).Context. The atomic phase of the interstellar medium plays a key role in the formation process of molecular clouds. Due to the line-of-sight confusion in the Galactic plane that is associated with its ubiquity, atomic hydrogen emission has been challenging to study. Aims. We investigate the physical properties of the “Maggie” filament, a large-scale filament identified in H I emission at line-of-sight velocities, vLSR ~−54 km s−1. Methods. Employing the high-angular resolution data from The H I/OH Recombination line survey of the inner Milky Way (THOR), we have been able to study H I emission features at negative vLSR velocities without any line-of-sight confusion due to the kinematic distance ambiguity in the first Galactic quadrant. In order to investigate the kinematic structure, we decomposed the emission spectra using the automated Gaussian fitting algorithm GAUSSPY+. Results. We identify one of the largest, coherent, mostly atomic H I filaments in the Milky Way. The giant atomic filament Maggie, with a total length of 1.2 ± 0.1 kpc, is not detected in most other tracers, and it does not show signs of active star formation. At a kinematic distance of 17 kpc, Maggie is situated below (by ≈500 pc), but parallel to, the Galactic H I disk and is trailing the predicted location of the Outer Arm by 5−10 km s−1 in longitude-velocity space. The centroid velocity exhibits a smooth gradient of less than ±3 km s−1 (10 pc)−1 and a coherent structure to within ±6 km s−1. The line widths of ~10 km s−1 along the spine of the filament are dominated by nonthermal effects. After correcting for optical depth effects, the mass of Maggie’s dense spine is estimated to be 7.2−1.9+2.5 × 105 M⊙. The mean number density of the filament is ~4 cm−3, which is best explained by the filament being a mix of cold and warm neutral gas. In contrast to molecular filaments, the turbulent Mach number and velocity structure function suggest that Maggie is driven by transonic to moderately supersonic velocities that are likely associated with the Galactic potential rather than being subject to the effects of self-gravity or stellar feedback. The probability density function of the column density displays a log-normal shape around a mean of ⟨NH I⟩ = 4.8 × 1020 cm−2, thus reflecting the absence of dominating effects of gravitational contraction. Conclusions. While Maggie’s origin remains unclear, we hypothesize that Maggie could be the first in a class of atomic clouds that are the precursors of giant molecular filaments.Peer reviewe