Using Bacterial and Fungal Inoculation Strategies to aid in the Wetland Restoration of Native Plants in Southern California

Planting of native species is a key part of ecological restoration, although the encroachment of invasive species and obstacles to seed germination can limit the success of revegetation efforts. The use of indigenous Plant Growth Promoting Rhizobacteria (PGPR) and Arbuscular Mycorrhizal Fungi (AMF) have been shown to increase the long-term height and diameter of native plants and increase soil fertility in certain studies. Inoculation of seeds with native PGPR have also been shown to increase seed germination. In this study, the effect of different inoculation treatments on different plants native to southern California was studied at two sites in the Ballona Wetlands Ecological Reserve (BWER). Before planting, non-native plants and seeds were removed through hand-pulling and raking at both sites. Seeds from the species Frankenia salina and Cressa truxillensis were separated into four treatments: control, PGPR inoculated, AMF inoculated, and co-inoculated, then planted and monitored for germination over the course of two months. The plant Eriogonum parvifolium was grown in AMF inoculated soil then transplanted into field conditions and separated into two treatments: AMF inoculated and co-inoculated, and monitored for longest stem length (cm) over two months. Results of this study suggest no substantial differences in short-term growth for E. parvifolium based on the use of inoculants. Initial germination results for C. truxillensis and F. salina were too soon to determine success. However, both studies will continue, with additional data incorporated into research results

Seed Collection and Germination Strategies for Common Wetland and Coastal Sage Scrub Species in Southern California

There is a need for a consolidated source of information on native vegetation seed collection and germination strategies in southern California. Published literature on these methods is often experimental, species-specific, and widely scattered throughout online and print media. Planting and restoration strategies may need to be site-specific; however, similar methodological approaches are often utilized allowing for the development of general strategies for seed collection, storage, and germination methods. A better understanding of species-specific seed attributes and growth processes will help restoration ecologists collect high-quality, viable seed, thereby increasing the potential success of the restored vegetation community by reducing plant mortality, project costs, and effort. This paper synthesizes seed collection and germination strategies for native vegetation common to southern California estuarine wetland, coastal dune, and coastal sage scrub systems

Using dune restoration on an urban beach as a coastal resilience approach

Coastal dunes are globally recognized as natural features that can be important adaptation approaches for climate change along urban and natural shores. We evaluated the recovery of coastal dunes on an intensively groomed urban beach in southern California over a six-year period after grooming was discontinued. Restoration actions were minimal and included installation of three sides of perimeter sand fencing, cessation of mechanical grooming and driving, and the addition of seeds of native dune plants. To track recovery, we conducted physical and biological surveys of the restoration site and an adjacent control site (groomed beach) using metrics including sand accretion, elevation, foredune and hummock formation, vegetation recovery, and wildlife use. Sediment accretion, elevation, and geomorphic complexity increased over time in the restoration site, largely in association with sand fencing and dune vegetation. A foredune ridge (maximum elevation increase of 0.9 m) and vegetated hummocks developed, along with a general increase in elevation across the restoration site (0.3 m). After six years, an estimated total volume of approximately 1,730 m3 of sand had accreted in the restoration site and 540 m3 of sand had accreted in the foredune ridge. Over the same period, more than a meter of sediment (vertical elevation change) accumulated along the perimeter sand fencing. Groomed control areas remained flat and uniform. The total cover of vegetation in the restoration site increased over time to a maximum of approximately 7% cover by the sixth year. No vegetation was observed on the groomed control site. Native plant species formed distinct zones across the restoration site beginning by the second year and increasing over time, with dune forming species aggregating closest to the ocean in association with the incipient foredune ridge. Ecological functions observed in the restoration area included presence of dune invertebrates, shorebird roosting, and use by a breeding federally threatened shorebird, the western snowy plover (Charadrius nivosus nivosus). Our findings on geomorphic and ecological responses of a pilot dune restoration on a heavily groomed urban beach provide new insights on the opportunities and expectations for restoring dunes as nature-based solutions for climate adaptation on urban shorelines

Skewed Distribution of Circulating Activated Natural Killer T (NKT) Cells in Patients with Common Variable Immunodeficiency Disorders (CVID)

Common variable immunodeficiency disorder (CVID) is the commonest cause of primary antibody failure in adults and children, and characterized clinically by recurrent bacterial infections and autoimmune manifestations. Several innate immune defects have been described in CVID, but no study has yet investigated the frequency, phenotype or function of the key regulatory cell population, natural killer T (NKT) cells. We measured the frequencies and subsets of NKT cells in patients with CVID and compared these to healthy controls. Our results show a skewing of NKT cell subsets, with CD4+ NKT cells at higher frequencies, and CD8+ NKT cells at lower frequencies. However, these cells were highly activated and expression CD161. The NKT cells had a higher expression of CCR5 and concomitantly expression of CCR5+CD69+CXCR6 suggesting a compensation of the remaining population of NKT cells for rapid effector action

Fine-Scale Structure Analysis Shows Epidemic Patterns of Clonal Complex 95, a Cosmopolitan Escherichia coli Lineage Responsible for Extraintestinal Infection

The Escherichia coli lineage known as clonal complex 95 (CC95) is a cosmopolitan human-associated lineage responsible for a significant fraction of extraintestinal infections of humans. Whole-genome sequence data of 200 CC95 strains from various origins enabled determination of the CC95 pangenome. The pangenome analysis revealed that strains of the complex could be assigned to one of five subgroups that vary in their serotype, extraintestinal virulence, virulence gene content, and antibiotic resistance gene profile. A total of 511 CC95 strains isolated from humans living in France, Australia, and the United States were screened for their subgroup membership using a PCR-based method. The CC95 subgroups are nonrandomly distributed with respect to their geographic origin. The relative frequency of the subgroups was shown to change through time, although the nature of the changes varies with continent. Strains of the subgroups are also nonrandomly distributed with respect to source of isolation (blood, urine, or feces) and host sex. Collectively, the evidence indicates that although strains belonging to CC95 may be cosmopolitan, human movement patterns have been insufficient to homogenize the distribution of the CC95 subgroups. Rather, the manner in which CC95 strains evolve appears to vary both spatially and temporally. Although CC95 strains appeared globally as pandemic, fine-scale structure analysis shows epidemic patterns of the CC95 subgroups. Furthermore, the observation that the relative frequency of CC95 subgroups at a single locality has changed over time indicates that the relative fitness of the subgroups has changedThis material is based in part on work supported by Office of Research and Development, Medical Research Service, Department of Veterans Affairs (grant 1 I01 CX000920-01 to J.R.J.). This work was partially supported by a grant from the Fondation Pour la Recherche Médicale (Équipe FRM 2016, DEQ20161136698) to E.D

FungalTraits:A user-friendly traits database of fungi and fungus-like stramenopiles

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun(Fun) together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold

Case Reports1. A Late Presentation of Loeys-Dietz Syndrome: Beware of TGFβ Receptor Mutations in Benign Joint Hypermobility

Background: Thoracic aortic aneurysms (TAA) and dissections are not uncommon causes of sudden death in young adults. Loeys-Dietz syndrome (LDS) is a rare, recently described, autosomal dominant, connective tissue disease characterized by aggressive arterial aneurysms, resulting from mutations in the transforming growth factor beta (TGFβ) receptor genes TGFBR1 and TGFBR2. Mean age at death is 26.1 years, most often due to aortic dissection. We report an unusually late presentation of LDS, diagnosed following elective surgery in a female with a long history of joint hypermobility. Methods: A 51-year-old Caucasian lady complained of chest pain and headache following a dural leak from spinal anaesthesia for an elective ankle arthroscopy. CT scan and echocardiography demonstrated a dilated aortic root and significant aortic regurgitation. MRA demonstrated aortic tortuosity, an infrarenal aortic aneurysm and aneurysms in the left renal and right internal mammary arteries. She underwent aortic root repair and aortic valve replacement. She had a background of long-standing joint pains secondary to hypermobility, easy bruising, unusual fracture susceptibility and mild bronchiectasis. She had one healthy child age 32, after which she suffered a uterine prolapse. Examination revealed mild Marfanoid features. Uvula, skin and ophthalmological examination was normal. Results: Fibrillin-1 testing for Marfan syndrome (MFS) was negative. Detection of a c.1270G > C (p.Gly424Arg) TGFBR2 mutation confirmed the diagnosis of LDS. Losartan was started for vascular protection. Conclusions: LDS is a severe inherited vasculopathy that usually presents in childhood. It is characterized by aortic root dilatation and ascending aneurysms. There is a higher risk of aortic dissection compared with MFS. Clinical features overlap with MFS and Ehlers Danlos syndrome Type IV, but differentiating dysmorphogenic features include ocular hypertelorism, bifid uvula and cleft palate. Echocardiography and MRA or CT scanning from head to pelvis is recommended to establish the extent of vascular involvement. Management involves early surgical intervention, including early valve-sparing aortic root replacement, genetic counselling and close monitoring in pregnancy. Despite being caused by loss of function mutations in either TGFβ receptor, paradoxical activation of TGFβ signalling is seen, suggesting that TGFβ antagonism may confer disease modifying effects similar to those observed in MFS. TGFβ antagonism can be achieved with angiotensin antagonists, such as Losartan, which is able to delay aortic aneurysm development in preclinical models and in patients with MFS. Our case emphasizes the importance of timely recognition of vasculopathy syndromes in patients with hypermobility and the need for early surgical intervention. It also highlights their heterogeneity and the potential for late presentation. Disclosures: The authors have declared no conflicts of interes

Plasma lipid profiles discriminate bacterial from viral infection in febrile children

Fever is the most common reason that children present to Emergency Departments. Clinical signs and symptoms suggestive of bacterial infection are often non-specific, and there is no definitive test for the accurate diagnosis of infection. The 'omics' approaches to identifying biomarkers from the host-response to bacterial infection are promising. In this study, lipidomic analysis was carried out with plasma samples obtained from febrile children with confirmed bacterial infection (n = 20) and confirmed viral infection (n = 20). We show for the first time that bacterial and viral infection produces distinct profile in the host lipidome. Some species of glycerophosphoinositol, sphingomyelin, lysophosphatidylcholine and cholesterol sulfate were higher in the confirmed virus infected group, while some species of fatty acids, glycerophosphocholine, glycerophosphoserine, lactosylceramide and bilirubin were lower in the confirmed virus infected group when compared with confirmed bacterial infected group. A combination of three lipids achieved an area under the receiver operating characteristic (ROC) curve of 0.911 (95% CI 0.81 to 0.98). This pilot study demonstrates the potential of metabolic biomarkers to assist clinicians in distinguishing bacterial from viral infection in febrile children, to facilitate effective clinical management and to the limit inappropriate use of antibiotics