1,217 research outputs found
Protozoa of Iowa
Ten years ago, the authors, while working at the University of Iowa Lakeside Laboratory at Lake Okoboji, compiled a list of Protozoa studied that summer. It was felt such a list could be enlarged upon and become a useful reference for workers in the field of Protozoology. As Protozoa have been identified we have added species from the vicinities of Lakeside Laboratory, Des Moines and Iowa City. Most of these were free living, but we have also included some parasitic forms. In addition we have made some attempt to include those mentioned in readily accessible literature, but no attempt has been made to make an exhaustive survey. We intend to supplement this list with additional forms as they are revealed by an intensive search of published material. We believe that this list is sufficiently complete to be of considerable value in its present form
Method for fabricating a low stress x-ray mask using annealable amorphous refractory compounds
Xâray masks have been fabricated by depositing a compressively stressed refractory material on a wafer, annealing to a zero stress state, and then forming the membrane. Amorphous TaSiN and TaSi alloys deposited with a magnetron sputter tool have been extensively characterized in terms of resistivity, composition, defectivity, surface roughness, and crystalline state. Optimization in terms of these parameters has resulted in base line selection of absorber films of the following compositions: Ta_(61)Si_(17)N_(21) and Ta_(75)Si_(23). The process is shown to be extendable to an entire class of amorphous annealable refractory materials. Careful studies of deposition and annealing conditions have resulted in a 4Ă reduction of image placement to the 30 nm maximum vector level. Finally, the importance of stress gradients is experimentally verified
Adenoviral-mediated gene transfer of ICP47 inhibits major histocompatibility complex class I expression on vascular cells in vitro
AbstractPurpose: Many viruses have evolved mechanisms to evade detection by the host immune system. The herpes simplex gene ICP47 encodes a protein that binds to the host antigen-processing transporter, inhibiting the formation of major histocompatibility complex class I (MHC-I) antigens in infected cells. MHC-I antigen expression is also important in acute allograft rejection. This study was designed to quantitate the effect of adenoviral-mediated gene transfer of ICP47 on MHC-I cell surface expression of human vascular cells. We hypothesized that the transduction of vascular cells with a replication-incompetent adenoviral vector that was expressing ICP47 (AdICP47) would inhibit constitutive and inducible MHC-I expression and thereby reduce the rate of cytolysis of ICP47-transduced vascular cells by sensitized cytotoxic T lymphocytes (CTL). Methods: A replication-incompetent adenoviral vector, AdICP47, was created to express ICP47 driven by the cytomegalovirus immediate early promoter. Cultured human vascular endothelial and smooth muscle cells and human dermal fibroblasts were transduced with either AdICP47 or the control empty vector AddlE1. Cell surface constitutive and Îł-interferonâinduced MHC-I expression were quantitated by flow cytometry. A standard 4-hour chromium release cytotoxicity assay was used to determine the percent cytolysis of transduced and nontransduced endothelial cells by sensitized CTL. Finally, to quantitate the specificity of the effect of ICP47 on MHC-I expression, adhesion molecule expression was quantitated in both transduced and nontransduced cells. Results: Constitutive MHC-I expression in AdICP47-transduced endothelial cells was inhibited by a mean of 84% ± 5% (SEM) in five experiments. After 48 hours of exposure to Îł-interferon, AdICP47-transduced cells exhibited a mean of 66% ± 8% lower MHC-I expression than nontransduced cells. Similar inhibition in MHC-I expression was achieved in AdICP47-transduced vascular smooth muscle cells and dermal fibroblasts. Percent cytolysis of AdICP47-transduced endothelial cells by CTL was reduced by 72%. Finally, the specificity of the effect of transduction of ICP47 on vascular cell MHC-I expression was confirmed by a lack of significant change in either constitutive or tumor necrosis factorâinduced vascular cell adhesion molecule/intercellular adhesion molecule expression. Conclusion: Transduction of vascular cells with AdICP47 strongly inhibits both constitutive and inducible MHC-I expression in human vascular cells. AdICP47-transduced cells exhibited a substantial reduction in cytolysis by CTL. Thus AdICP47 transduction holds promise as a technique to characterize the role of MHC-I expression in acute vascular allograft rejection in vivo and as a potential therapeutic intervention. (J Vasc Surg 2000;31:558-66.
Analytic Quantization of the QCD String
We perform an analytic semi-classical quantization of the straight QCD string
with one end fixed and a massless quark on the other, in the limits of orbital
and radial dominant motion. We compare our results to the exact numerical
semi-classical quantization. We observe that the numerical semi-classical
quantization agrees well with our exact numerical canonical quantization.Comment: RevTeX, 10 pages, 9 figure
Studies of Diffuse Interstellar Bands. V. Pairwise Correlations of Eight Strong DIBs and Neutral Hydrogen, Molecular Hydrogen, and Color Excess
We establish correlations between equivalent widths of eight diffuse
interstellar bands (DIBs), and examine their correlations with atomic hydrogen,
molecular hydrogen, and EB-V . The DIBs are centered at \lambda\lambda 5780.5,
6204.5, 6283.8, 6196.0, 6613.6, 5705.1, 5797.1, and 5487.7, in decreasing order
of Pearson\^as correlation coefficient with N(H) (here defined as the column
density of neutral hydrogen), ranging from 0.96 to 0.82. We find the equivalent
width of \lambda 5780.5 is better correlated with column densities of H than
with E(B-V) or H2, confirming earlier results based on smaller datasets. We
show the same is true for six of the seven other DIBs presented here. Despite
this similarity, the eight strong DIBs chosen are not well enough correlated
with each other to suggest they come from the same carrier. We further conclude
that these eight DIBs are more likely to be associated with H than with H2, and
hence are not preferentially located in the densest, most UV shielded parts of
interstellar clouds. We suggest they arise from different molecules found in
diffuse H regions with very little H (molecular fraction f<0.01). Of the 133
stars with available data in our study, there are three with significantly
weaker \lambda 5780.5 than our mean H-5780.5 relationship, all of which are in
regions of high radiation fields, as previously noted by Herbig. The
correlations will be useful in deriving interstellar parameters when direct
methods are not available. For instance, with care, the value of N(H) can be
derived from W{\lambda}(5780.5).Comment: Accepted for publication in The Astrophysical Journal; 37 pages, 11
figures, 6 table
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model.
MotivationElectronic health records (EHRs) are quickly becoming omnipresent in healthcare, but interoperability issues and technical demands limit their use for biomedical and clinical research. Interactive and flexible software that interfaces directly with EHR data structured around a common data model (CDM) could accelerate more EHR-based research by making the data more accessible to researchers who lack computational expertise and/or domain knowledge.ResultsWe present PatientExploreR, an extensible application built on the R/Shiny framework that interfaces with a relational database of EHR data in the Observational Medical Outcomes Partnership CDM format. PatientExploreR produces patient-level interactive and dynamic reports and facilitates visualization of clinical data without any programming required. It allows researchers to easily construct and export patient cohorts from the EHR for analysis with other software. This application could enable easier exploration of patient-level data for physicians and researchers. PatientExploreR can incorporate EHR data from any institution that employs the CDM for users with approved access. The software code is free and open source under the MIT license, enabling institutions to install and users to expand and modify the application for their own purposes.Availability and implementationPatientExploreR can be freely obtained from GitHub: https://github.com/BenGlicksberg/PatientExploreR. We provide instructions for how researchers with approved access to their institutional EHR can use this package. We also release an open sandbox server of synthesized patient data for users without EHR access to explore: http://patientexplorer.ucsf.edu.Supplementary informationSupplementary data are available at Bioinformatics online
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Smoking and bladder symptoms in women Obstet Gynecol 2011;118:643â
The Relationship Between Fractures and DXA Measures of BMD in the Distal Femur of Children and Adolescents With Cerebral Palsy or Muscular Dystrophy
Children with limited or no ability to ambulate frequently sustain fragility fractures. Joint contractures, scoliosis, hip dysplasia, and metallic implants often prevent reliable measures of bone mineral density (BMD) in the proximal femur and lumbar spine, where BMD is commonly measured. Further, the relevance of lumbar spine BMD to fracture risk in this population is questionable. In an effort to obtain bone density measures that are both technically feasible and clinically relevant, a technique was developed involving dual-energy X-ray absorptiometry (DXA) measures of the distal femur projected in the lateral plane. The purpose of this study is to test the hypothesis that these new measures of BMD correlate with fractures in children with limited or no ability to ambulate. The relationship between distal femur BMD Z-scores and fracture history was assessed in a cross-sectional study of 619 children aged 6 to 18 years with muscular dystrophy or moderate to severe cerebral palsy compiled from eight centers. There was a strong correlation between fracture history and BMD Z-scores in the distal femur; 35% to 42% of those with BMD Z-scores less than â5 had fractured compared with 13% to 15% of those with BMD Z-scores greater than â1. Risk ratios were 1.06 to 1.15 (95% confidence interval 1.04â1.22), meaning a 6% to 15% increased risk of fracture with each 1.0 decrease in BMD Z-score. In clinical practice, DXA measure of BMD in the distal femur is the technique of choice for the assessment of children with impaired mobility. © 2010 American Society for Bone and Mineral Researc
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