Trends in Annual Survival of Steller’s Eiders Molting at Izembek Lagoon on the Alaska Peninsula, 1993–2006

Izembek Lagoon, located on the Alaska Peninsula, is an important molting area for the Pacific population of Steller’s Eiders (Polysticta stelleri) and was the site of consistent banding effort during 1993–2006. We used Pradel mark-recapture models to estimate annual survival and population growth rates for adult Steller’s Eiders molting at Izembek Lagoon. We designed 32 models that included effects of sex and year on survival, recapture rate, and seniority, as well as potential trends in survival and seniority. The top model incorporated a two-phase trend (1993–98, 1999–2003) in survival and seniority for each sex and fully sex- and year-specific recapture rates. Average annual adult survival was estimated at 0.86 (SE = 0.030) for females and 0.87 (SE = 0.018) for males. Average annual population growth rates since 1998 were estimated to be approximately 1.0 for both sexes. A brief warming event in the Pacific Decadal Oscillation (1997–98) coincided with the lowest estimates of annual survival, while a subsequent return to cooler conditions in the Bering Sea coincided with the highest estimates and an increasing trend in annual survival.La lagune d’Izembek, située dans la péninsule de l’Alaska, constitue une aire de mue importante pour la population d’eiders de Steller (Polysticta stelleri) du Pacifique. Elle a fait l’objet de travaux de baguage soutenus entre 1993 et 2006. Nous nous sommes servis des modèles de marquage et de recapture de Pradel pour estimer les taux de survie et d’accroissement de la population d’eiders de Steller adultes en période de mue à la lagune d’Izembek. Nous avons conçu 32 modèles qui compre-naient les effets du sexe et de l’année sur le taux de survie, le taux de recapture et l’ancienneté. Le meilleur des modèles comprenait une tendance diphasique (de 1993 à 1998, et de 1999 à 2003) en ce qui a trait aux taux de survie et d’ancienneté de chacun des sexes ainsi qu’en ce qui a trait aux taux de recapture entièrement en fonction du sexe et de l’année. Chez les adultes, le taux de survie moyen était estimé à 0,86 (SE = 0,030) pour la femelle et à 0,87 (SE = 0,018) pour le mâle. Depuis 1998, les taux annuels d’accroissement de la population étaient estimés à environ 1,0 dans le cas des deux sexes. Un bref événement de réchauffement dans l’oscillation décadaire du Pacifique (1997-1998) a coïncidé avec les estimations de survie annuelles les plus faibles, tandis que le retour de conditions plus fraîches dans la mer de Béring a coïncidé avec les estimations les plus élevées ainsi qu’à une tendance à la hausse du taux de survie annuel

INSIGHTS ON THE EFFICACY OF VISION EXAMINATIONS & VISION SCREENINGS FOR CHILDREN FIRST ENTERING SCHOOL

Abstract In the year 2000, a law was passed in Kentuck

Vision 2020: A View of Our Energy Future

The Morning Address was given by The Honorable George Allen. “The Regulatory Framework: Where Are We Headed?” session by Eric Finkbeiner, Senior Adviser for Policy, Office of Governor Robert McDonnell; David Christian, Chief Executive Officer, Dominion Generation; and Professor Joel Eisen, University of Richmond School of Law. Professor Noah Sachs, University of Richmond School of Law, served as moderator. “The Future of Coal” session by John Lain, Partner at McGuireWoods LLP; Cale Jaffe, Senior Attorney with the Southern Environmental Law Center; and W. Thomas Hudson, President of W. Thomas Hudson and Associates, Inc. and of the Virginia Coal Association. Stephen E. Taylor, Allen Chair Editor for the University of Richmond Law Review, served as moderator. “Nuclear Power: Is There a ‘Renaissance’?” session by Donald Irwin, Hunton & Williams; Christopher Paine, Director of Nuclear Program, Natural Resources Defense Council (invited); and Michael H. Montgomery, Vice President of Fuel Development, Lightbridge Corporation. Tricia Dunlap, Robert R. Merhige, Jr. Fellow at the University of Richmond School of Law, served as moderator. “Emerging Issues in Energy Policy” session by Mark Rosen, Deputy General Counsel, CNA Corporation; Jefferson Reynolds, Water Policy Director with the Virginia Department of Environmental Quality; Kruskaia Sierra-Escalante, Senior Counsel for the International Finance Corporation; and Edward Lowe, General Manager for Renewable Energy Market Development, GE Energy. Andrea W. Wortzel, Counsel with Hunton & Williams and Vice Chair of the Environmental Law Section of the Virginia State Bar, served as moderator. The Closing Address was given by The Honorable Carol M. Browner, Assistant to the President for Energy and Climate Change and Former Administrator of the Environmental Protection Agency (invited)

Pain Input After Spinal Cord Injury (SCI) Undermines Long-Term Recovery and Engages Signal Pathways That Promote Cell Death

Pain (nociceptive) input caudal to a spinal contusion injury increases tissue loss and impairs long-term recovery. It was hypothesized that noxious stimulation has this effect because it engages unmyelinated pain (C) fibers that produce a state of over-excitation in central pathways. The present article explored this issue by assessing the effect of capsaicin, which activates C-fibers that express the transient receptor potential vanilloid receptor-1 (TRPV1). Rats received a lower thoracic (T11) contusion injury and capsaicin was applied to one hind paw the next day. For comparison, other animals received noxious electrical stimulation at an intensity that engages C fibers. Both forms of stimulation elicited similar levels of c-fos mRNA expression, a cellular marker of nociceptive activation, and impaired long-term behavioral recovery. Cellular assays were then performed to compare the acute effect of shock and capsaicin treatment. Both forms of noxious stimulation increased expression of tumor necrosis factor (TNF) and caspase-3, which promotes apoptotic cell death. Shock, but not capsaicin, enhanced expression of signals related to pyroptotic cell death [caspase-1, inteleukin-1 beta (IL-1ß)]. Pyroptosis has been linked to the activation of the P2X7 receptor and the outward flow of adenosine triphosphate (ATP) through the pannexin-1 channel. Blocking the P2X7 receptor with Brilliant Blue G (BBG) reduced the expression of signals related to pyroptotic cell death in contused rats that had received shock. Blocking the pannexin-1 channel with probenecid paradoxically had the opposite effect. BBG enhanced long-term recovery and lowered reactivity to mechanical stimulation applied to the girdle region (an index of chronic pain), but did not block the adverse effect of nociceptive stimulation. The results suggest that C-fiber input after injury impairs long-term recovery and that this effect may arise because it induces apoptotic cell death

Factors associated with nosocomial SARS-CoV transmission among healthcare workers in Hanoi, Vietnam, 2003

BACKGROUND: In March of 2003, an outbreak of Severe Acute Respiratory Syndrome (SARS) occurred in Northern Vietnam. This outbreak began when a traveler arriving from Hong Kong sought medical care at a small hospital (Hospital A) in Hanoi, initiating a serious and substantial transmission event within the hospital, and subsequent limited spread within the community. METHODS: We surveyed Hospital A personnel for exposure to the index patient and for symptoms of disease during the outbreak. Additionally, serum specimens were collected and assayed for antibody to SARS-associated coronavirus (SARS-CoV) antibody and job-specific attack rates were calculated. A nested case-control analysis was performed to assess risk factors for acquiring SARS-CoV infection. RESULTS: One hundred and fifty-three of 193 (79.3%) clinical and non-clinical staff consented to participate. Excluding job categories with <3 workers, the highest SARS attack rates occurred among nurses who worked in the outpatient and inpatient general wards (57.1, 47.4%, respectively). Nurses assigned to the operating room/intensive care unit, experienced the lowest attack rates (7.1%) among all clinical staff. Serologic evidence of SARS-CoV infection was detected in 4 individuals, including 2 non-clinical workers, who had not previously been identified as SARS cases; none reported having had fever or cough. Entering the index patient's room and having seen (viewed) the patient were the behaviors associated with highest risk for infection by univariate analysis (odds ratios 20.0, 14.0; 95% confidence intervals 4.1–97.1, 3.6–55.3, respectively). CONCLUSION: This study highlights job categories and activities associated with increased risk for SARS-CoV infection and demonstrates that a broad diversity of hospital workers may be vulnerable during an outbreak. These findings may help guide recommendations for the protection of vulnerable occupational groups and may have implications for other respiratory infections such as influenza

Latitude, temperature, and habitat complexity predict predation pressure in eelgrass beds across the Northern Hemisphere

Latitudinal gradients in species interactions are widely cited as potential causes or consequences of global patterns of biodiversity. However, mechanistic studies documenting changes in interactions across broad geographic ranges are limited. We surveyed predation intensity on common prey (live amphipods and gastropods) in communities of eelgrass (Zostera marina) at 48 sites across its Northern Hemisphere range, encompassing over 370 of latitude and four continental coastlines. Predation on amphipods declined with latitude on all coasts but declined more strongly along western ocean margins where temperature gradients are steeper. Whereas in situ water temperature at the time of the experiments was uncorrelated with predation, mean annual temperature strongly positively predicted predation, suggesting a more complex mechanism than simple increased metabolic activity at the time of predation. This large-scale biogeographic pattern was modified by local habitat characteristics; predation declined with higher shoot density both among and within sites. Predation rates on gastropods, by contrast, were uniformly low and varied little among sites. The high replication and geographic extent of our study not only provides additional evidence to support biogeographic variation in intensity, but also insight into the mechanisms that relate temperature and biogeographic gradients in species interactions

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN