89 research outputs found
Can Ingoing Contact Chains and other cattle movement network metrics help predict herd-level bovine tuberculosis in Irish cattle herds?
UK National Ecosystem Assessment Follow-on. Work package 7: Operationalising scenarios in the UK National Ecosystem Assessment Follow-on
Summary
Study aims and approach
An aim of the UK NEA Follow-on (UK NEAFO) is to develop and communicate the evidence base of
the UK NEA and make it relevant to decision and policy making. It also provides an important
opportunity for those working on scenario methods and concepts to scrutinise the role of futures
thinking in the management of ecosystem services and so develop their effectiveness as decision
support tools. In this study we have therefore asked: how can the UK NEA scenarios help us to
understand, manage and communicate the consequences of changes in ecosystem services across all
scales?
There are many different understandings about what scenarios are, and what they should be used
for. To clarify the issues surrounding the role of scenarios, we have approached this work from two
angles. We have firstly looked at the way the storylines can support decision making processes.
Secondly, we have looked at the content of the scenarios themselves and explored how through the
use of models the UK NEA scenarios as products might be refined to enhance their value as
analytical tools.
Scenarios in Action
We used the opportunity of a series of meetings with stakeholders to develop the UK NEA scenarios
from a process perspective. These meetings took various forms, but throughout the main aim was to
find out whether people found the scenarios sufficiently believable, challenging and relevant.
In workshops organised by the scenario team in Leeds, Edinburgh and Belfast, we worked with
participants on a series of tasks designed to help them immerse themselves in the scenarios and
reflect on them critically. While those we worked with had many comments about the scenarios in
detail, the evidence we collected from these meetings suggests that the majority of people found
the scenarios to be plausible and the projections consistent. The majority also agreed with the
proposition that the suite of scenarios as a whole addressed a relevant ranges of issues.
We explored with the workshop participants several ways in which the storylines could be enriched,
by: developing the narrative about the way people might live in the different scenario worlds;
developing time-lines for the scenarios; thinking more deeply about regional and local differences;
and, exploring how the scenarios would frustrate or facilitate the embedding of the ecosystem
approach in decision making. We found that while all of these elements had value in terms of
stimulating discussion and understanding of the scenarios, they were not needed in order to address
deficiencies in the original storylines in terms of plausibility or credibility.
The evidence we collected therefore suggests that the existing narratives are probably sufficient as
an entry point for discussions about the future of ecosystem services in the UK. What was apparent
from the observations that we made in the workshops was that it would probably be a mistake to
‘over-engineer’ or ‘over-specify’ the narratives because there needs to be room for discussion and
probing. We were struck how people took the existing scenarios and found new features and ideas
in them than had not been identified by in the original work. For example, in one session National
Security, with its emphasis on resource efficiency, was found to be ‘greener’ than it initially looks. In
another Local Stewardship was discovered to need some degree of central control and regulation to
work efficiently. These kinds of discussion are evidence of the reflection, deliberation and social
learning that can be promoted by using the UK NEA scenarios.
UK NEAFO Work Package 7: Operationalising scenarios
7
In the workshop we organised in Belfast we found that the presentation of the scenarios could be
tailored to a specific region (i.e. Northern Ireland) and, through area-specific breakout groups during
the workshop, to specific localities within it. However, our experiences here emphasised the need
for considerable preparation, consultation with the stakeholder community, and changing of the
workshop format to make the scenarios intelligible and engaging to local stakeholders.
Work on the use of the scenarios in a more explicit decision support role will be reported via the
work on response options (WP8), which considered how they could be used to ‘stress-test’ policy
response options. The experience gained from the work undertaken in the early stages of UK NEAFO
was that the scenarios appeared to provide a suitable platform for the work, but that the stresstesting
methodology needed to be refined. During the follow-on we have also interviewed policy
leads in Defra, for example, to gain a better picture of policy needs, and the way scenarios might
usefully serve them. Apart from the challenge of ‘relevance’ it is clear that the time needed for
people to work with scenarios probably means that they are less useful to policy customers in the
context of their everyday work but can be useful at a very broad and strategic level. However, there
is clearly an opportunity for scenarios to be used more extensively through commissioned work. The
importance of commissioned work has been emphasised during the follow-on phase by invitations
to observe the work of the CAMERAS1 work in Scotland, and the Noise Study being undertaken for
Defra. Both are actively using the UK NEA scenarios. The outcomes of these on-going studies will be
reported elsewhere by others. Nevertheless, even though these projects are at a preliminary stage
they help us better understand how scenarios can be used to communicate the consequences of
changes in ecosystem services to different groups and individuals.
Scenarios as products: developing the model base
The UK NEA scenarios were initially used to make both qualitative and quantitative projections. The
quantitative work mainly involved modelling how land cover would change under the different
scenarios (Haines-Young et al. 2011). Although these data were used to make an analysis of the
changes in marginal economic values for some ecosystem services during the initial phase of the UK
NEA, they have not been fully exploited. At the time it was recognised that there were many gaps in
our understanding of the links between land cover and ecosystem services; UK NEAFO has provided
the opportunity to address some of these deficiencies.
Thus in the follow-on work we have sought to extend the range of models that can be used to
explore the UK NEA scenarios. The modelling work has not sought to change the scenarios
fundamentally, but to enrich the insights that can be derived from exploring the differences
between them in a systematic, and quantitative way. The goal, has been to extend the analysis that
can be built up around the narratives and hence enrich the scenarios as ‘products’. Four topic areas
were selected as the focus for this work: flood and drought risk (based on an analysis of changes in
river flows), biodiversity (farmland birds), marine and cultural ecosystem services.
Catchment modelling
We looked at the effects of land-use change on river flows under each of the UK NEA scenarios. We
modelled hydrological discharge within 34 UK catchments and calculated four hydrological indicators
for each catchment: average annual discharge, flood hazard, and Q5 and Q95 (measures of the
magnitude of unusually high (Q5) and unusually low (Q95) flows). For our flood hazard indicator we
calculated the interval between floods of a size currently occurring every 30 years. Although we kept
climate constant in the models, as we wanted to isolate the effects of land cover change, we ran
them for both the high and low climate change land cover variants for each scenario.
1 A Coordinated Agenda for Marine, Environment and Rural Affairs Science, 2011-2016.
http://www.scotland.gov.uk/Topics/Research/About/EBAR/CAMERASsite
In general, the ‘green’ scenarios, Nature@Work and Green and Pleasant Land, as well as National
Security, were associated with lower flows than currently occur (when measured using any of the
four indicators). However, for a given scenario there was a great deal of variability between
catchments in terms of the size and statistical significance of the differences. The magnitude of
change across all scenarios and catchments ranged from -13% to 6% for average annual discharge,
-14 to 7% for Q5, -24 to 27 % for Q95 and -16 to 36 years for flood hazard. Differences were
particularly evident between Nature@Work and World Markets, with the latter associated with
higher flows than occur currently, and the majority of the statistically significant increased flows.
Some catchments showed significant changes that were different in sign between these two
scenarios.
Taken together, our results indicate that that in managing change a balance needs to be struck
between alleviating the likelihoods of increased drought and increased flooding, depending on the
likely effects of these phenomena in the catchment.
Farmland birds
We looked at the relationship between land use data produced during the first phase of the UK NEA
and models of farmland bird populations, in 1kmx1km squares covered by the Breeding Bird Survey
(BBS) and Winter Farmland Bird Survey (WFBS).
We used Functional Space Models to estimate the annual population growth rate under each
scenario of each of the 19 farmland bird species used to calculate the farmland bird index (Gregory
et al. 2004). We used this to look at the relationship between land use under the scenarios and: i)
the average population growth rate for all 19 species, and ii) a subset of 11 species showing
declining population trends under current land use. Overall we found that land use change across
the scenarios had relatively little impact. However, the only statistically significant change was for
declining species under Green and Pleasant Land, where population growth rates became
significantly more negative.
We used Mechanistic Models to estimate the number of over-winter ‘bird-days’ for two types of
seed-eating farmland birds, a yellowhammer-type and linnet-type These species were chosen
because they differ in their food preferences with respect to cereal, oil and weed seeds, but
between them are representative of the diversity of seed-eating farmland birds as a whole. We
found a significant decline in the ecological value of lowland agricultural areas for these species
across all UK NEA scenarios, but the greatest impact was for scenarios with the highest monetised
values for ecosystem services, as measured by the first phase of the UK NEA (Nature@Work, Green
and Pleasant Land). This appears to be due to the fact that, compared with the baseline, the area of
arable crops declines most sharply under these scenarios, due partly to changes in land use but also
because of conversion of arable land to other habitats important for ecosystem services (e.g.
woodland).
Taken together these results imply a trade-off between overall value for ecosystem services and
conservation of farmland birds, and highlight the need to consider the specific impacts of land use
change on biodiversity, alongside other ecosystem services.
Marine ecosystem services
Only a limited attempt was made to model marine ecosystem services during the first phase of the
UK NEA. In the follow-on we have conducted preliminary work to produce spatially explicit models
for three important marine ecosystem services: fisheries landings, aquaculture production and
carbon sequestration. We made comparisons between baseline data and time slices for 2015, 2030
UK NEAFO Work Package 7: Operationalising scenarios
9
and 2060 under four of the UK NEA scenarios that were considered most relevant for the sector, and
mapped these across UK territorial waters.
There is a high degree of uncertainty associated with the models, mainly due to a lack of suitable
data and poor knowledge of the drivers of change. In many cases, in the absence of robust
quantitative models, we needed to take the qualitative descriptions of the UK NEA scenarios and
combine these with expert knowledge to estimate changes in the three types of ecosystem service.
We estimated that in three of the four scenarios: Nature@Work, Local Stewardship and National
Security, fisheries landings would be, by 2060 only slightly lower or at higher levels than they are
today. Under World Markets, however, projected landings would decline significantly by 2060, due
to a lack of regulation combined with high levels of investment from private capital. In the light of
this, it was interesting that aquaculture was at higher levels under World Markets than under any of
the other scenarios, although all of them showed higher levels than the baseline. This was because
under this scenario more investment capital would be available to invest in fish farms.
We believe that carbon sequestration would be most likely to be impacted by the World Markets
and Natural Security, due to higher CO2 emissions causing an increase in ocean acidification.
Our results, although tentative, mark a significant first step in attempts to map and project the
impact of possible future change on marine ecosystem services.
Cultural Ecosystem Services
In the first phase of the UK NEA, the relationship between the drivers of change and cultural
ecosystem services (CES) was mainly explored through the impact they had on land cover. For UK
NEAFO, we additionally used the Monitor of Engagement for the Natural Environment (MENE)
dataset. We examined how the UK NEA scenarios can be used as a framework to explore the
relationship between the supply of cultural spaces in the landscape and peoples preferences for
different types of natural spaces and practices in them. We have developed a Bayesian Belief
Network (BBN) that allows users to explore these relationships interactively and look at the potential
impacts of changes socio-demographic structure of the kind described by the UK NEA scenarios.
Our spatial analysis of the MENE data showed that people tend to select locations with higher
woodland cover than the average for the surroundings, when they travel intermediate distances
from their home, but that this tendency declines when they travel longer distances. Woodland cover
is projected to double under both Nature@Work and Green and Pleasant Land, and both provide
more opportunities to visit woodland close to home than under scenarios such as World Markets.
However, our analysis shows that on the basis of the current geography of people and woodlands,
the way planting is targeting under Green and Pleasant Land has the potential to deliver greater joint
benefits from biodiversity change and cultural ecosystem services than Nature@Work.
The BBN we have developed using the HUGIN Expert software allows the relationships within the
MENE data to be explored interactively; it is hosted on a prototype website that is open to the wider
community. By examining the relationships between socio-demographic characteristics of the MENE
respondents, the types of natural spaces they visit and the activities they do in them, this BBN tool
allows users to explore the impacts of possible future change on the supply and demand of CES.
Conclusion
How can plausible future scenarios help understand, manage and communicate the consequences of
changes in ecosystem services across all scales? In this work we have shown that they can be used to
promote understanding by the deliberative processes that they engender. The UK NEA scenarios
appear to be sufficiently rich and comprehensive to support debate across a wide range of topic
areas relevant to current policy concerns. The scenarios can also help understanding by providing a
framework in which current models can be applied and the outcome used both to test the
plausibility of the scenarios themselves and to deepen the insights that can be derived from them.
These analytical ‘scenario products’ can be equally important both in terms of deepening our
understanding of the assumptions on which the scenarios are built and in stimulating debate about
their implications.
We have shown that the distinction between the ‘process’ and ‘product’ dimensions of scenario
thinking is a useful one, given the many ways scenarios can be used. The distinction clarifies some of
the different purposes and problems that scenarios work seeks to address. However, our work also
demonstrates that both components have their strengths, and neither can be taken isolation. If we
are to use scenarios to understand, manage and communicate the consequences of changes in
ecosystem services across different scales and in different contexts, then targeted analytical studies
developed within the qualitative framework of the UK NEA scenarios, can enrich our understanding
of today’s issues and how we might respond to them
Epidemiology of age-dependent prevalence of Bovine Herpes Virus Type 1 (BoHV-1) in dairy herds with and without vaccination
Research Areas: Veterinary SciencesMany studies report age as a risk factor for BoHV-1 infection or seropositivity. However, it is unclear whether this pattern refects true epidemiological causation or is a consequence of study design and other issues. Here, we seek to understand the age-related dynamics of BoHV-1 seroprevalence in seasonal calving Irish dairy herds and provide decision support for the design and implementation of efective BoHV-1 testing strategies. We analysed seroprevalence data from dairy herds taken during two Irish seroprevalence surveys conducted between 2010 and 2017.
Age-dependent seroprevalence profles were constructed for herds that were seropositive and unvaccinated. Some of these profles revealed a sudden increase in seroprevalence between adjacent age-cohorts, from absent or low to close to 100% of seropositive animals. By coupling the outcome of our data analysis with simulation output of an individual-based model at the herd scale, we have shown that these sudden increases are related to extensive virus circulation within a herd for a limited time, which may then subsequently remain latent over the following years.
BoHV-1 outbreaks in dairy cattle herds afect animals independent of age and lead to almost 100% seroconversion in all age groups, or at least in all animals within a single epidemiological unit. In the absence of circulating infection,
there is a year-on-year increase in the age-cohort at which seroprevalence changes from low to high. The fndings of this study inform recommendations regarding testing regimes in the context of contingency planning or an eradication programme in seasonal calving dairy herds.info:eu-repo/semantics/publishedVersio
Decision support beyond total savings—Eligibility and potential savings for individual participants from changes in the national surveillance strategy for bovine viral diarrhoea (BVD) in Ireland
Publication history: Accepted - 9 April 2018; Published online - 11 April 2018Surveillance and management of livestock diseases is often evaluated with reference to expected sector-wide costs. In contrast, we calculate losses or savings for individual herd owners of a change in monitoring strategy during a national cattle disease eradication programme: bovine viral diarrhoea (BVD) in Ireland. The alternative strategy differs in how the disease is identified; by its sample- rather than census-based approach; and by its greater cost per test. We examined the costs faced by each breeding herd if testing were conducted using serology on a sample of young stock, in contrast to the current method of tissue-tag testing of all newborn calves. Following best knowledge of the likely costs, the following input values were used: i) €2.50 per test for tissue-tag testing and €7.66 for serology, ii) serology conducted on a sample of 10 young stock per management group from either the 6–12 month or 9–18 month cohorts; iii) 3 scenarios for the number of management groups: one per herd (M∞), one per 100 cows (M100) and one per 50 cows (M50). We found that many herds would often not be able to supply a suitable sample of young stock for serology or would face higher testing costs than when using tissue tag testing. The largest number (25%) of herds would benefit from participating in the change if sampling were done in October. These could annually save between €2.1 million under M∞ and €0.8 million under M50 (€108 - €49 per herd). However, analysing herd-level data we found that 90% of all Irish breeding herds would save less than €1.42 per cow or €99 in total per annum under M∞, and €0.59 per cow or €36 in total under M50. In a sensitivity analysis, we allowed serology costs to vary between €2 and €10 per animal. Herds at the 10 t h percentile of most savings made from switching would save at most €155 (M∞ at €2 per serology test) but would not save anything under M50 at costs ≥ €10. We conclude that, under these assumptions, the expected reduction in testing costs for the majority of beneficiaries would barely outweigh the practical implications of the strategy switch or the risks to the eradication programme associated with sample based surveillance. This study does not assess the cost-effectiveness of alternatives post-eradication.This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors
An observational study of ear-tagged calf mortality (1 to 100 days) on Irish dairy farms and associations between biosecurity practices and calf mortality on farms participating in a Johne's disease control program
Postnatal mortality among replacement stock has a detrimental effect on the social, economic, and environmental sustainability of dairy production. Calf mortality rates vary between countries and show differences in temporal trends; most, however, are characterized by high levels of between-farm variability. Explaining this variation can be difficult because herd-level information on management practices relevant to calf health is often not available. The Irish Johne's Control Programme (IJCP) contains a substantial on-farm monitoring program called the Veterinary Risk Assessment and Management Plan (VRAMP). Although this risk assessment is largely focused on factors relevant to the transmission of paratuberculosis, many of its principles are good practice biocontainment policies that are also advocated for the protection of calf health. The objectives of this study were (1) to quantify mortality in ear-tagged Irish dairy calves between 2016 and 2020 using both survival and risk approaches, (2) to determine risk factors for 100-d cumulative mortality hazard in ear-tagged Irish dairy calves between 2016 and 2020, (3) to determine whether 100-d cumulative mortality hazard was higher in ear-tagged calves within herds registered in the IJCP versus those that were not registered in the IJCP and whether there were differences between these cohorts over time, and (4) within IJCP herds, to determine whether VRAMP score or changes in VRAMP score were associated with 100-d cumulative mortality hazard. Excluding perinatal mortality, the overall 100-d cumulative mortality hazard was 4.1%. Calf mortality was consistently underestimated using risk approaches that did not account for calf censoring. Cox proportional hazards models showed that cumulative mortality hazard was greater in male calves; particularly, calves born to Jersey breed dams and those with a beef breed sire. Mortality hazard increased with increasing herd size, was highest in calves born in herds that contract-reared heifers, and lowest in those born in mixed dairy-beef enterprises. Mortality hazard decreased over time with the mortality hazard in 2020 being 0.83 times that of 2016. Mortality hazard was higher in IJCP-registered herds than nonregistered herds (hazard ratio 1.06, 95% CI 1.01–1.12), likely reflecting differences in herds that enrolled in the national program. However, we detected a significant interaction between IJCP status (enrolled vs. not enrolled) and year (hazard ratio 0.96, 95% CI 0.92–1.00), indicating that the decrease in mortality hazard between 2016 and 2020 was greater in IJCP herds versus non-IJCP herds. Finally, increasing VRAMP scores (indicating higher risk for paratuberculosis transmission) were positively associated with increased calf mortality hazard. Postnatal calf mortality rates in Irish dairy herds declined between 2016 and 2020. Our study suggests that implementation of recommended biocontainment practices to control paratuberculosis in IJCP herds was associated with a reduction in calf mortality hazard
Regional models of the influence of human disturbance and habitat quality on the distribution of breeding territories of common ringed plover Charadrius hiaticula and Eurasian oystercatcher Haematopus ostralegus
We estimated the influence of human disturbance and environmental factors on territory establishment in common ringed plovers Charadrius hiaticula and Eurasian oystercatchers Haematopus ostralegus, to inform the conservation of these species. We examined a 212 km stretch of coastline in the United Kingdom in 2003, mapping all breeding pairs of both study species, as well as the environmental characteristics of beaches and locations of visitors on the beach, the latter measured by filming from a light aircraft. Of the 1,003 200 m sections of beach surveyed, 183 contained ringed plover territories (267 breeding pairs) and 117 contained oystercatcher territories (226 breeding pairs). 38,634 human visitors to the beach were mapped from three flights. Population densities of both ringed plovers and oystercatchers were lower in locations with high visitor numbers, even when accounting for the influence of the environmental characteristics of the beach. The two bird species showed similar rates of territory establishment at very low visitor rates, but oystercatchers showed a stronger negative response when visitor rates reached higher levels. Binary logistic regression models were used to identify areas where the birds would benefit most from reductions in the number of visitors and we illustrate how this information could be used to inform management around sites otherwise favourable for territory establishment
Relative Roles of Grey Squirrels, Supplementary Feeding, and Habitat in Shaping Urban Bird Assemblages
Non-native species are frequently considered to influence urban assemblages. The grey squirrel Sciurus carolinensis is one such species that is widespread in the UK and is starting to spread across Europe; it predates birds’ nests and can compete with birds for supplementary food. Using distance sampling across the urbanisation intensity gradient in Sheffield (UK) we test whether urban grey squirrels influence avian species richness and density through nest predation and competition for supplementary food sources. We also assess how urban bird assemblages respond to supplementary feeding. We find that grey squirrels slightly reduced the abundance of breeding bird species most sensitive to squirrel nest predation by reducing the beneficial impact of woodland cover. There was no evidence that grey squirrel presence altered relationships between supplementary feeding and avian assemblage structure. This may be because, somewhat surprisingly, supplementary feeding was not associated with the richness or density of wintering bird assemblages. These associations were positive during the summer, supporting advocacy to feed birds during the breeding season and not just winter, but explanatory capacity was limited. The amount of green space and its quality, assessed as canopy cover, had a stronger influence on avian species richness and population size than the presence of grey squirrels and supplementary feeding stations. Urban bird populations are thus more likely to benefit from investment in improving the availability of high quality habitats than controlling squirrel populations or increased investment in supplementary feeding
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Spatio-temporal variation in predation by urban domestic cats (Felis catus) and the acceptability of possible management actions in the UK
Urban domestic cat (Felis catus) populations can attain exceedingly high densities and are not limited by natural prey availability. This has generated concerns that they may negatively affect prey populations, leading to calls for management. We enlisted cat-owners to record prey returned home to estimate patterns of predation by free-roaming pets in different localities within the town of Reading, UK and questionnaire surveys were used to quantify attitudes to different possible management strategies. Prey return rates were highly variable: only 20% of cats returned ≥4 dead prey annually. Consequently, approximately 65% of owners received no prey in a given season, but this declined to 22% after eight seasons. The estimated mean predation rate was 18.3 prey cat−1 year−1 but this varied markedly both spatially and temporally: per capita predation rates declined with increasing cat density. Comparisons with estimates of the density of six common bird prey species indicated that cats killed numbers equivalent to adult density on c. 39% of occasions. Population modeling studies suggest that such predation rates could significantly reduce the size of local bird populations for common urban species. Conversely, most urban residents did not consider cat predation to be a significant problem. Collar-mounted anti-predation devices were the only management action acceptable to the majority of urban residents (65%), but were less acceptable to cat-owners because of perceived risks to their pets; only 24% of cats were fitted with such devices. Overall, cat predation did appear to be of sufficient magnitude to affect some prey populations, although further investigation of some key aspects of cat predation is warranted. Management of the predation behavior of urban cat populations in the UK is likely to be challenging and achieving this would require considerable engagement with cat owners
Linking ecosystem services, urban form and green space configuration using multivariate landscape metric analysis
Context: Landscape metrics represent powerful tools for quantifying landscape structure, but uncertainties persist around their interpretation. Urban settings add unique considerations, containing habitat structures driven by the surrounding built-up environment. Understanding urban ecosystems, however, should focus on the habitats rather than the matrix. Objectives: We coupled a multivariate approach with landscape metric analysis to overcome existing shortcomings in interpretation. We then explored relationships between landscape characteristics and modelled ecosystem service provision. Methods: We used principal component analysis and cluster analysis to isolate the most effective measures of landscape variability and then grouped habitat patches according to their attributes, independent of the surrounding urban form. We compared results to the modelled provision of three ecosystem services. Seven classes resulting from cluster analysis were separated primarily on patch area, and secondarily by measures of shape complexity and inter-patch distance. Results: When compared to modelled ecosystem services, larger patches up to 10 ha in size consistently stored more carbon per area and supported more pollinators, while exhibiting a greater risk of soil erosion. Smaller, isolated patches showed the opposite, and patches larger than 10 ha exhibited no additional areal benefit. Conclusions: Multivariate landscape metric analysis offers greater confidence and consistency than analysing landscape metrics individually. Independent classification avoids the influence of the urban matrix surrounding habitats of interest, and allows patches to be grouped according to their own attributes. Such a grouping is useful as it may correlate more strongly with the characteristics of landscape structure that directly affect ecosystem function
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