Rutes migratòries i àrees d'hivernada del virot gros Calonectris Diomedea des Pantaleu (Mallorca)

Migratory routes and wintering areas of Cory’s shearwaters Calonectris diomedea from es Pantaleu (Mallorca). Here we show the migratory trips through the Atlantic Ocean of 8 Cory’s shearwaters breeding at es Pantaleu islet (P.N. de sa Dragonera, Majorca) during the winter of 2002-2003. The majority of the birds preferred the coasts of the Sahara and of Mauritania and to a lesser extent those of Namibia, corresponding to two zones of oceanic upwelling of cold and very productive waters (Canary and Benguela currents respectively). One of the birds behaved more in keeping with those from the Atlantic colonies, wintering in the confluence of the Brazilian and Malvinas currents off the coasts of southern Brazil and Uruguay, a straight-line distance of some 9000 km from es Pantaleu. Another spent the winter in the equatorial waters of the gulf of Guinea. Most of the birds made a loop-migration return through the northern sub-equatorial Atlantic, avoiding the calm areas. One of them reached the coasts of the Small Antilles, in the Caribbean

Estimating recruitment and survival in partially monitored populations

In evolutionary and ecological studies, demographic parameters are commonly derived from detailed information collected on a limited number of individuals or in a confined sector of the breeding area. This partial monitoring is expected to underestimate survival and recruitment processes because individuals marked in a monitored location may move to or recruit in an unobservable site. We formulate a multi-event capture-recapture model using E-SURGE software which incorporates additional information on breeding dispersal and the proportion of monitored sites to obtain unbiased estimates of survival and recruitment rates. Using simulated data, we assessed the biases in recruitment, survival and population growth rate when monitoring 10-90% of the whole population in a short- and a long-lived species with low breeding dispersal. Finally, we illustrate the approach using real data from a long-term monitoring program of a colony of Scopoli's shearwaters Calonectris diomedea. We found that demographic parameters estimated without considering the proportion of the area monitored were generally underestimated. These biases caused a substantial error in the estimated population growth rate, especially when a low proportion of breeding individuals were monitored. The proposed capture-recapture model successfully corrected for partial monitoring and provided robust demographic estimates. Synthesis and applications. In many cases, animal breeding populations can only be monitored partially. Consequently, recruitment and immature survival are underestimated, but the extent of these biases depends on the proportion of the area that remains undetected and the degree of breeding dispersal. We present a new method to obtain robust and unbiased measures of survival and recruitment processes from capture-recapture data. The method can be applied to any monitored population regardless of the type of nests (e.g. artificial or natural) or breeding system (e.g. colonial or territorial animals), and it only relies on an estimate of the proportion of the monitored area. The unbiased estimates obtained by this method can be used to improve the reliability of predictions of demographic population models for species' conservation and management.Research funds were provided by the Spanish Ministries of Science, Economy and Competitiveness (refs. BOS2003-01960, CGL2006-04325/BOS, CGL2009-08298, CGL2013-42203-R, JCI-2011-09085)Peer Reviewe

It’s not all abundance: Detectability and accessibility of food also explain breeding investment in long-lived marine animals

Large-scale climatic indices are extensively used as predictors of ecological processes, but the mechanisms and the spatio-temporal scales at which climatic indices influence these processes are often speculative. Here, we use long-term data to evaluate how a measure of individual breeding investment (the egg volume) of three long-lived and long-distance-migrating seabirds is influenced by i) a large-scale climatic index (the North Atlantic Oscillation) and ii) local-scale variables (food abundance, foraging conditions, and competition). Winter values of the North Atlantic Oscillation did not correlate with local-scale variables measured in spring, but surprisingly, both had a high predictive power of the temporal variability of the egg volume in the three study species, even though they have different life-history strategies. The importance of the winter North Atlantic Oscillation suggests carry-over effects of winter conditions on subsequent breeding investment. Interestingly, the most important local-scale variables measured in spring were associated with food detectability (foraging conditions) and the factors influencing its accessibility (foraging conditions and competition by density-dependence). Large-scale climatic indices may work better as predictors of foraging conditions when organisms perform long distance migrations, while local-scale variables are more appropriate when foraging areas are more restricted (e.g. during the breeding season). Contrary to what is commonly assumed, food abundance does not directly translate into food intake and its detectability and accessibility should be considered in the study of food-related ecological processes.En prensa4,41

Population Structure and Dispersal Patterns within and between Atlantic and Mediterranean Populations of a Large-Range Pelagic Seabird

Dispersal is critically linked to the demographic and evolutionary trajectories of populations, but in most seabird species it may be difficult to estimate. Using molecular tools, we explored population structure and the spatial dispersal pattern of a highly pelagic but philopatric seabird, the Cory's shearwater Calonectris diomedea. Microsatellite fragments were analysed from samples collected across almost the entire breeding range of the species. To help disentangle the taxonomic status of the two subspecies described, the Atlantic form C. d. borealis and the Mediterranean form C. d. diomedea, we analysed genetic divergence between subspecies and quantified both historical and recent migration rates between the Mediterranean and Atlantic basins. We also searched for evidence of isolation by distance (IBD) and addressed spatial patterns of gene flow. We found a low genetic structure in the Mediterranean basin. Conversely, strong genetic differentiation appeared in the Atlantic basin. Even if the species was mostly philopatric (97%), results suggest recent dispersal between basins, especially from the Atlantic to the Mediterranean (aprox. 10% of migrants/generation across the last two generations). Long-term gene flow analyses also suggested an historical exchange between basins (about 70 breeders/generation). Spatial analysis of genetic variation indicates that distance is not the main factor in shaping genetic structure in this species. Given our results we recommend gathering more data before concluded whether these taxa should be treated as two species or subspecies. © 2013 Genovart et al.Peer Reviewe

Parental body condition does not correlate with offspring sex-ratio in Cory's shearwater

We analyzed offspring sex ratio variation in Mediterranean Cory's Shearwater (Calonectris d. diomedea) during two consecutive breeding seasons in two colonies. We test for differential breeding conditions between years and colonies looking at several breeding parameters and parental condition. We then explored the relationship between offspring sex ratio and parental condition and breeding parameters. This species is sexually dimorphic with males larger and heavier than females; consequently we expected differential parental cost in rearing sexes, or a greater sensitivity of male chicks to adverse conditions, which may lead to biased sex ratios. Chicks were sexed molecularly by the amplification of the CHD genes. Offspring sex ratio did not differ from parity, either at hatching or fledging, regardless of the colony or year. However, parental body condition and breeding parameters such as egg size and breeding success were different between years and colonies. Nevertheless, neither nestling mortality nor body condition at fledging varied between years or colonies, suggesting that male and female chicks were probably not differentially affected by variability in breeding conditions

Accelerating the SRP-PHAT algorithm on multi and many-core platforms using OpenCL

[EN] The Steered Response Power with Phase Transform (SRP-PHAT) algorithm is a well-known method for sound source localization due to its robust performance in noisy and reverberant environments. This algorithm is used in a large number of acoustic applications such as automatic camera steering systems, human-machine interaction, video gaming and audio surveillance. SPR-PHAT implementations require to handle a high number of signals coming from a microphone array and a huge search grid that influences the localization accuracy of the system. In this context, high performance in the localization process can only be achieved by using massively parallel computational resources. Different types of multi-core machines based either on multiple CPUs or on GPUs are commonly employed in diverse fields of science for accelerating a number of applications, mainly using OpenMP and CUDA as programming frameworks, respectively. This implies the development of multiple source codes which limits the portability and application possibilities. On the contrary, OpenCL has emerged as an open standard for parallel programming that is nowadays supported by a wide range of architectures. In this work, we evaluate an OpenCL-based implementations of the SRP-PHAT algorithm in two state-of-the-art CPU and GPU platforms. Results demonstrate that OpenCL achieves close-to-CUDA performance in GPU (considered as upper bound) and outperforms in most of the CPU configurations based on OpenMP.This work has been supported by the postdoctoral fellowship from Generalitat Valenciana APOSTD/2016/069, the Spanish Government through TIN2014-53495-R, TIN2015-65277-R and BIA2016-76957-C3-1-R, and the Universidad Jaume I Project UJI-B2016-20.Badía Contelles, JM.; Belloch Rodríguez, JA.; Cobos Serrano, M.; Igual Peña, FD.; Quintana-Ortí, ES. (2019). Accelerating the SRP-PHAT algorithm on multi and many-core platforms using OpenCL. 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Accessed 21 May 2018Savioja L, Välimäki V, Smith JO (2011) Audio signal processing using graphics processing units. J Audio Eng Soc 59(1–2):3–19Belloch JA, Gonzalez A, Martínez-Zaldívar FJ, Vidal AM (2011) Real-time massive convolution for audio applications on GPU. J Supercomput 58(3):449–457Belloch JA, Gonzalez A, Quintana-Ortí ES, Ferrer M, Välimäki V (2017) GPU-based dynamic wave field synthesis using fractional delay filters and room compensation. IEEE/ACM Trans Audio Speech Lang Process 25(2):435–447Peruffo Minotto V, Rosito Jung C, Gonzaga da Silveira L, Lee B (2013) GPU-based approaches for real-time sound source localization using the SRP-PHAT algorithm. Int J High Perform Comput Appl 27(3):291–306Belloch JA, Gonzalez A, Vidal AM, Cobos M (2015) On the performance of multi-gpu-based expert systems for acoustic localization involving massive microphone arrays. Expert Syst Appl 42(13):5607–5620Seewald LC, Gonzaga L, Veronez MR, Minotto VP, Jung CR (2014) Combining srp-phat and two kinects for 3d sound source localization. Expert Syst Appl 41(16):0957–4174Theodoropoulos D, Kuzmanov G, Gaydadjiev G (2011) Multi-core platforms for beamforming and wave field synthesis. IEEE Trans Multimedia 3(2):235–245Belloch JA, Badia MJ, Igual FD, Quintana-Ortí E, Cobos M (2017) Evaluating sound source localization on multi and many-core platform. In: Proceedings of the 17th International Conference on Computational and Mathematical Methods in Science and Engineering, vol 1. Rota, pp 279–286Cobos M, Marti A, Lopez JJ (2011) A modified SRP-PHAT functional for robust real-time sound source localization with scalable spatial sampling. IEEE Signal Process Lett 18(1):71–74Marti A, Cobos M, Lopez JJ (2013) A steered response power iterative method for high-accuracy acoustic source location. J Acoust Soc Am 134(4):2627–2630Frigo M, Johnson SG (2005) The design and implementation of FFTW3. Proc IEEE 93(2):216–231 (special issue on “Program generation, optimization, and platform adaptation”)NVIDIA cuFFT library user’s guide (2018). https://docs.nvidia.com/cuda/pdf/CUFFT_Library.pdf . Accessed 21 May 2018OpenCL fast Fourier transforms. http://clmathlibraries.github.io/clFFT . Accessed 21 May 2018Scarpino M (2012) OpenCL in action: how to accelerate graphics and computation. Mannin

Ecological and physiological variance in T-cell mediated immune response in Cory's shearwaters

T-cell mediated immune response (CMI) hasbeen widely studied in relation to individual andfitness components in birds. However, few studieshave simultaneously examined individual and socialfactors and habitat-mediated variance in theimmunity of chicks and adults from the samepopulation and in the same breeding season. Weinvestigated ecological and physiological variancein CMI of male and female nestlings and adults in abreeding population of Cory's Shearwaters(Calonectrisdiomedea) in theMediterranean Sea. Explanatory variables includedindividual traits (body condition, carbon andnitrogen stable isotope ratios, plasma totalproteins, triglycerides, uric acid, osmolarity,β-hydroxy-butyrate, erythrocyte meancorpuscular diameter, hematocrit, andhemoglobin) and burrow traits(temperature, isolation, and physicalstructure). During incubation, immune responseof adult males was significantly greater than thatof females. Nestlings exhibited a lower immuneresponse than adults. Ecological and physiologicalfactors affecting immune response differed betweenadults and nestlings. General linear models showedthat immune response in adult males was positivelyassociated with burrow isolation, suggesting thatmales breeding at higher densities suffer immunesystem suppression. In contrast, immune response inchicks was positively associated with bodycondition and plasma triglyceride levels.Therefore, adult immune response appears to beassociated with social stress, whereas a trade-offbetween immune function and fasting capability mayexist for nestlings. Our results, and those fromprevious studies, provide support for anasymmetrical influence of ecological andphysiological factors on the health of differentage and sex groups within a population, and for theimportance of simultaneously considering individualand population characteristics in intraspecificstudies of immune response

Interspecific synchrony on breeding performance and the role of anthropogenic food subsidies

Open Access via the PLOS Flat Fee Agreement Funding: This work has been partially supported by Balearic Government, Ministry of Education (FPU2012-000869), Ministry of Economy (IBISES-CGL2013-42203-R and RESET-CGL2017-85210-P) and EU project MINOW (H2020-634495). It was partially funded by the EU FEDER regional funds. ASA was supported by a Ramón y Cajal contract (RYC-2017- 22796) funded by the Ministerio de Ciencia, Innovación y Universidades, the Agencia Estatal de Investigación and the ESF. MG was supported by a postdoctoral contract co-funded by the Regional Government of the BI and the ESF (PD/023/2015). There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Peer reviewedPublisher PD

Polyvascular Subclinical Atherosclerosis: Correlation Between Ankle Brachial Index and Carotid Atherosclerosis in a Population-Based Sample

We assessed the correlation between the biomarkers of lower limb atherosclerosis (eg, ankle-brachial index [ABI]) and of carotid atherosclerosis (eg, common carotid intima-media thickness (IMT) and presence of atherosclerotic plaque) in a population-based cohort from Girona (Northwest Spain) recruited in 2010. Ankle-brachial index and carotid ultrasound were performed in all participants. Generalized additive multivariable models were used to adjust a regression model of common carotid IMT on ABI. Logistic regression multivariable models were adjusted to assess the probability of carotid plaque in individuals with peripheral artery disease. We included 3307 individuals (54.2% women), mean age 60 years (standard deviation 11). Two patterns of association were observed between subclinical biomarkers of atherosclerosis at the lower limb and carotid artery. Ankle-brachial index and common carotid IMT showed a linear trend in men [beta coefficient (95% confidence interval) =-.068 (-.123; -.012); P = .016]. Women with peripheral artery disease presented with high risk of atherosclerotic plaque at the carotid artery [Odds ratio (95% confidence interval) = 2.61, (1.46; 4.69); P = .001]. Men showed a significant linear association between ABI levels and common carotid IMT values. Women with peripheral artery disease presented with high risk of atherosclerotic plaque at the carotid artery

Population control of an overabundant species achieved through consecutive anthropogenic perturbations

The control of overabundant vertebrates is often problematic. Much work has focused on population-level responses and overabundance due to anthropogenic subsidies. However, far less work has been directed at investigating responses following the removal of subsidies. We investigate the consequences of two consecutive perturbations-closure of a landfill and an inadvertent poisoning event- on the trophic ecology (13C, 15N and 34S), survival, and population size of an overabundant generalist seabird species, the yellow-legged gull. We expected that the landfill closure would cause a strong dietary shift and the inadvertent poisoning a decrease in gull population size. As a long-lived species, we also anticipated adult survival to be buffered against the decrease in food availability but not against the inadvertent poisoning event. Stable isotope analysis confirmed the dietary shift towards marine resources after the disappearance of the landfill. Although the survival model was inconclusive, it did suggest that the perturbations had a negative effect on survival, which was followed by a recovery back to average values. Food limitation likely triggered dispersal to other populations, while poisoning may have increased mortality; these two processes were likely responsible for the large fall in population size that occurred after the two consecutive perturbations. Life-history theory suggests that perturbations may encourage species to halt existing breeding investment in order to ensure future survival. However, under strong perturbation pulses the resilience threshold might be surpassed and changes in population density can arise. Consecutive perturbations may effectively manage overabundant species