News from the Levant #19a: The City of DavidTM

Este ensaio apresenta os resultados do trabalho de um sítio arqueológico, um bem-sucedido se um tanto piegas turístico “destino”, e um sonho de empreendedor em contrução. O objetivo, claro, não é para fazer um sítio arqueológico mais bonito e historicamente mais rico, mas pressionar os palestinos a deixar a área. Esta reconstrução permite visitar esse sítio arqueológico na cidade. A razão é que israelenses e palestinos não podem se dar bem: eles são judeus e árabes, cujos objetivos e intenções no local são bastante diferentes. Tais conflitos permitem detenções indiscriminadas e tiroteios, maltrato de crianças, portas quebradas no meio da noite, o deslocamento das famílias, assentados sentindo-se em casa em antigas casas palestinas – a história agora-familiar da Ocupação

George Eliot’s Remainder-Man

In an epigraph to one of the chapters of Felix Holt, George Eliot likens vulgar jokers to a turkey-cock: “it has a cruel beak,” she writes, “and a silly iteration of ugly sounds…”. This paper is about cruel beaks and silly iterations, about verbal aggression and repetition in George Eliot’s writings. In particular, I’m curious about what seems at first like a stylistic tic, a way she has of fixing on a somewhat odd word or phrase and of repeating it two or three or more times within the space..

GeneMill: A 21st century platform for innovation

GeneMill officially launched on 4th February 2016 and is an open access academic facility located at The University of Liverpool that has been established for the high-throughput construction and testing of synthetic DNA constructs. GeneMill provides end-to-end design, construction and phenotypic characterization of small to large gene constructs or genetic circuits/pathways for academic and industrial applications. Thus, GeneMill is equipping the scientific community with easy access to the validated tools required to explore the possibilities of Synthetic Biology

Revisiting a fundamental test of the disc instability model for X-ray binaries

We revisit a core prediction of the disc instability model (DIM) applied to X-ray binaries. The model predicts the existence of a critical mass transfer rate, which depends on disc size, separating transient and persistent systems. We therefore selected a sample of 52 persistent and transient neutron star and black hole X-ray binaries and verified if observed persistent (transient) systems do lie in the appropriate stable (unstable) region of parameter space predicted by the model. We find that, despite the significant uncertainties inherent to these kinds of studies, the data are in very good agreement with the theoretical expectations. We then discuss some individual cases that do not clearly fit into this main conclusion. Finally, we introduce the transientness parameter as a measure of the activity of a source and show a clear trend of the average outburst recurrence time to decrease with transientness in agreement with the DIM predictions. We therefore conclude that, despite difficulties in reproducing the complex details of the lightcurves, the DIM succeeds to explain the global behaviour of X-ray binaries averaged over a long enough period of time.Comment: 12 pages, 4 figures. Accepted for publication in MNRAS. Version 2: some typos corrected and references adde

Synthetic Biology UK 2015

Abstract GeneMill officially launched on 4th February 2016 and is an open access academic facility located at The University of Liverpool that has been established for the high-throughput construction and testing of synthetic DNA constructs. GeneMill provides end-to-end design, construction and phenotypic characterization of small to large gene constructs or genetic circuits/pathways for academic and industrial applications. Thus, GeneMill is equipping the scientific community with easy access to the validated tools required to explore the possibilities of Synthetic Biology

Telomeric expression sites are highly conserved in trypanosoma brucei

Subtelomeric regions are often under-represented in genome sequences of eukaryotes. One of the best known examples of the use of telomere proximity for adaptive purposes are the bloodstream expression sites (BESs) of the African trypanosome Trypanosoma brucei. To enhance our understanding of BES structure and function in host adaptation and immune evasion, the BES repertoire from the Lister 427 strain of T. brucei were independently tagged and sequenced. BESs are polymorphic in size and structure but reveal a surprisingly conserved architecture in the context of extensive recombination. Very small BESs do exist and many functioning BESs do not contain the full complement of expression site associated genes (ESAGs). The consequences of duplicated or missing ESAGs, including ESAG9, a newly named ESAG12, and additional variant surface glycoprotein genes (VSGs) were evaluated by functional assays after BESs were tagged with a drug-resistance gene. Phylogenetic analysis of constituent ESAG families suggests that BESs are sequence mosaics and that extensive recombination has shaped the evolution of the BES repertoire. This work opens important perspectives in understanding the molecular mechanisms of antigenic variation, a widely used strategy for immune evasion in pathogens, and telomere biology

Human-animal elision: a Darwinian universe in George Eliot’s novels

No abstract available

Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity

Background Ebolaviruses cause a severe and often fatal haemorrhagic fever in humans, with some species such as Ebola virus having case fatality rates approaching 90%. Currently, the worst Ebola virus outbreak since the disease was discovered is occurring in West Africa. Although thought to be a zoonotic infection, a concern is that with increasing numbers of humans being infected, Ebola virus variants could be selected which are better adapted for human-to-human transmission. Results To investigate whether genetic changes in Ebola virus become established in response to adaptation in a different host, a guinea pig model of infection was used. In this experimental system, guinea pigs were infected with Ebola virus (EBOV), which initially did not cause disease. To simulate transmission to uninfected individuals, the virus was serially passaged five times in naïve animals. As the virus was passaged, virulence increased and clinical effects were observed in the guinea pig. An RNAseq and consensus mapping approach was then used to evaluate potential nucleotide changes in the Ebola virus genome at each passage. Conclusions Upon passage in the guinea pig model, EBOV become more virulent, RNA editing and also coding changes in key proteins become established. The data suggest that the initial evolutionary trajectory of EBOV in a new host can lead to a gain in virulence. Given the circumstances of the sustained transmission of EBOV in the current outbreak in West Africa, increases in virulence may be associated with prolonged and uncontrolled epidemics of EBOV