Scale-dependent response diversity of seabirds to prey in the North Sea

Functional response diversity is defined as the diversity of responses to environmental change among species that contribute to the same ecosystem function. Because different ecological processes dominate on different spatial and temporal scales, response diversity is likely to be scale dependent. Using three extensive data sets on seabirds, pelagic fish, and zooplankton, we investigate the strength and diversity in the response of seabirds to prey in the North Sea over three scales of ecological organization. Two-stage analyses were used to partition the variance in the abundance of predators and prey among the different scales of investigation: variation from year to year, variation among habitats, and variation on the local patch scale. On the year-to-year scale, we found a strong and synchronous response of seabirds to the abundance of prey, resulting in low response diversity. Conversely, as different seabird species were found in habitats dominated by different prey species, we found a high diversity in the response of seabirds to prey on the habitat scale. Finally, on the local patch scale, seabirds were organized in multispecies patches. These patches were weakly associated with patches of prey, resulting in a weak response strength and a low response diversity. We suggest that ecological similarities among seabird species resulted in low response diversity on the year-to-year scale. On the habitat scale, we suggest that high response diversity was due to interspecific competition and niche segregation among seabird species. On the local patch scale, we suggest that facilitation with respect to the detection and accessibility of prey patches resulted in overlapping distribution of seabirds but weak associations with prey. The observed scale dependencies in response strength and diversity have implications for how the seabird community will respond to different environmental disturbances

Active-distributed temperature sensing to continuously quantify vertical flow in boreholes

We show how a distributed borehole flowmeter can be created from armored Fiber Optic cables with the Active-Distributed Temperature Sensing (A-DTS) method. The principle is that in a flowing fluid, the difference in temperature between a heated and unheated cable is a function of the fluid velocity. We outline the physical basis of the methodology and report on the deployment of a prototype A-DTS flowmeter in a fractured rock aquifer. With this design, an increase in flow velocity from 0.01 to 0.3 m s−1 elicited a 2.5°C cooling effect. It is envisaged that with further development this method will have applications where point measurements of borehole vertical flow do not fully capture combined spatiotemporal dynamics

Characterizing groundwater flow and heat transport in fractured rock using Fiber-Optic Distributed Temperature Sensing

International audienceWe show how fully distributed space-time measurements with Fiber-Optic Distributed Temperature Sensing (FO-DTS) can be used to investigate groundwater flow and heat transport in fractured media. Heat injection experiments are combined with temperature measurements along fiber-optic cables installed in boreholes. Thermal dilution tests are shown to enable detection of cross-flowing fractures and quantification of the cross flow rate. A cross borehole thermal tracer test is then analyzed to identify fracture zones that are in hydraulic connection between boreholes and to estimate spatially distributed temperature breakthrough in each fracture zone. This provides a significant improvement compared to classical tracer tests, for which concentration data are usually integrated over the whole abstraction borehole. However, despite providing some complementary results, we find that the main contributive fracture for heat transport is different to that for a solute tracer

Buoyant densities of DNA from various strains of Streptococcus mutans

The buoyant densities of eight strains of Streptococcus mutans were determined by analytical ultracentrifugation in caesium chloride. The results were as follows (in g/cm3): K-1-R(1.7044); SL-1(1.7040); E-49(1.7010); BHT(1.7009); FA-1(1.7000); Ingbritt(1.6967); NCTC-10449(1.6964); GS-5(1.6962). These data add to the mounting evidence for genetic heterogeneity in Strept. mutans.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/34097/1/0000379.pd

Distributed temperature sensing as a down-hole tool in hydrogeology

Distributed Temperature Sensing (DTS) technology enables down-hole temperature monitoring to study hydrogeological processes at unprecedentedly high frequency and spatial resolution. DTS has been widely applied in passive mode in site investigations of groundwater flow, in-well flow, and subsurface thermal property estimation. However, recent years have seen the further development of the use of DTS in an active mode (A-DTS) for which heat sources are deployed. A suite of recent studies using A-DTS down-hole in hydrogeological investigations illustrate the wide range of different approaches and creativity in designing methodologies. The purpose of this review is to outline and discuss the various applications and limitations of DTS in down-hole investigations for hydrogeological conditions and aquifer geological properties. To this end, we first review examples where passive DTS has been used to study hydrogeology via down-hole applications. Secondly, we discuss and categorize current A-DTS borehole methods into three types. These are thermal advection tests, hybrid cable flow logging, and heat pulse tests. We explore the various options with regards to cable installation, heating approach, duration, and spatial extent in order to improve their applicability in a range of settings. These determine the extent to which each method is sensitive to thermal properties, vertical in well flow, or natural gradient flow. Our review confirms that the application of DTS has significant advantages over discrete point temperature measurements, particularly in deep wells, and highlights the potential for further method developments in conjunction with other emerging fiber optic based sensors such as Distributed Acoustic Sensing. This article is protected by copyright. All rights reserved

An Extended Network of Genomic Maintenance in the Archaeon Pyrococcus abyssi Highlights Unexpected Associations between Eucaryotic Homologs.

In Archaea, the proteins involved in the genetic information processing pathways, including DNA replication, transcription, and translation, share strong similarities with those of eukaryotes. Characterizations of components of the eukaryotic-type replication machinery complex provided many interesting insights into DNA replication in both domains. In contrast, DNA repair processes of hyperthermophilic archaea are less well understood and very little is known about the intertwining between DNA synthesis, repair and recombination pathways. The development of genetic system in hyperthermophilic archaea is still at a modest stage hampering the use of complementary approaches of reverse genetics and biochemistry to elucidate the function of new candidate DNA repair gene. To gain insights into genomic maintenance processes in hyperthermophilic archaea, a protein-interaction network centred on informational processes of Pyrococcus abyssi was generated by affinity purification coupled with mass spectrometry. The network consists of 132 interactions linking 87 proteins. These interactions give insights into the connections of DNA replication with recombination and repair, leading to the discovery of new archaeal components and of associations between eucaryotic homologs. Although this approach did not allow us to clearly delineate new DNA pathways, it provided numerous clues towards the function of new molecular complexes with the potential to better understand genomic maintenance processes in hyperthermophilic archaea. Among others, we found new potential partners of the replication clamp and demonstrated that the single strand DNA binding protein, Replication Protein A, enhances the transcription rate, in vitro, of RNA polymerase. This interaction map provides a valuable tool to explore new aspects of genome integrity in Archaea and also potentially in Eucaryotes

Features of 80S mammalian ribosome and its subunits

It is generally believed that basic features of ribosomal functions are universally valid, but a systematic test still stands out for higher eukaryotic 80S ribosomes. Here we report: (i) differences in tRNA and mRNA binding capabilities of eukaryotic and bacterial ribosomes and their subunits. Eukaryotic 40S subunits bind mRNA exclusively in the presence of cognate tRNA, whereas bacterial 30S do bind mRNA already in the absence of tRNA. 80S ribosomes bind mRNA efficiently in the absence of tRNA. In contrast, bacterial 70S interact with mRNA more productively in the presence rather than in the absence of tRNA. (ii) States of initiation (Pi), pre-translocation (PRE) and post-translocation (POST) of the ribosome were checked and no significant functional differences to the prokaryotic counterpart were observed including the reciprocal linkage between A and E sites. (iii) Eukaryotic ribosomes bind tetracycline with an affinity 15 times lower than that of bacterial ribosomes (Kd 30 μM and 1–2 μM, respectively). The drug does not effect enzymatic A-site occupation of 80S ribosomes in contrast to non-enzymatic tRNA binding to the A-site. Both observations explain the relative resistance of eukaryotic ribosomes to this antibiotic

Feasibility of soil moisture estimation using passive distributed temperature sensing

Through its role in the energy and water balances at the land surface, soil moisture is a key state variable in surface hydrology and land-atmosphere interactions. Point observations of soil moisture are easy to make using established methods such as time domain reflectometry and gravimetric sampling. However, monitoring large-scale variability with these techniques is logistically and economically infeasible. Here passive soil distributed temperature sensing (DTS) will be introduced as an experimental method of measuring soil moisture on the basis of DTS. Several fiber-optic cables in a vertical profile are used as thermal sensors, measuring propagation of temperature changes due to the diurnal cycle. Current technology allows these cables to be in excess of 10 km in length, and DTS equipment allows measurement of temperatures every 1 m. The passive soil DTS concept is based on the fact that soil moisture influences soil thermal properties. Therefore, observing temperature dynamics can yield information on changes in soil moisture content. Results from this preliminary study demonstrate that passive soil DTS can detect changes in thermal properties. Deriving soil moisture is complicated by the uncertainty and nonuniqueness in the relationship between thermal conductivity and soil moisture. A numerical simulation indicates that the accuracy could be improved if the depth of the cables was known with greater certainty.Keywords: fiber optic, vadose zone, distributed sensing, temperature, soil moistur

Assessing the effectiveness of riparian restoration projects using Landsat and precipitation data from the cloud-computing application ClimateEngine.org

Riparian vegetation along streams provides a suite of ecosystem services in rangelands and thus is the target of restoration when degraded by over-grazing, erosion, incision, or other disturbances. Assessments of restoration effectiveness depend on defensible monitoring data, which can be both expensive and difficult to collect. We present a method and case study to evaluate the effectiveness of restoration of riparian vegetation using a web-based cloud-computing and visualization tool (ClimateEngine.org) to access and process remote sensing and climate data. Restoration efforts on an Eastern Oregon ranch were assessed by analyzing the riparian areas of four creeks that had in-stream restoration structures constructed between 2008 and 2011. Within each study area, we retrieved spatially and temporally aggregated values of summer (June, July, August) normalized difference vegetation index (NDVI) and total precipitation for each water year (October-September) from 1984 to 2017. We established a pre-restoration (1984-2007) linear regression between total water year precipitation and summer NDVI for each study area, and then compared the post-restoration (2012-2017) data to this pre-restoration relationship. In each study area, the post-restoration NDVI-precipitation relationship was statistically distinct from the pre-restoration relationship, suggesting a change in the fundamental relationship between precipitation and NDVI resulting from stream restoration. We infer that the in-stream structures, which raised the water table in the adjacent riparian areas, provided additional water to the streamside vegetation that was not available before restoration and reduced the dependence of riparian vegetation on precipitation. This approach provides a cost-effective, quantitative method for assessing the effects of stream restoration projects on riparian vegetation

Silver and Palladium Complexes of a Bis(benzimidazolin-2-ylidene)pyridine Pincer Ligand

Reaction of 2,6-bis(3-butylbenzimidazol-1-ium)pyridine dibromide with silVer oxide affords a dinuclear complex of the type [L2Ag2]2+ [L ) 2,6-bis(3-butylbenzimidazolin-2-ylidene)pyridine]. 1H NMR spectroscopic studies suggest that the dinuclear structure is also present in solution. Transmetalationof the silVer-NHC complex with PdCl2(CH3CN)2 yields a mononuclear palladium complex of the type [LPdCl]+, with a chelating C,N,C pincer ligand