Fitness of Isogenic Colony Morphology Variants of Pseudomonas aeruginosa in Murine Airway Infection

Chronic lung infections with Pseudomonas aeruginosa are associated with the diversification of the persisting clone into niche specialists and morphotypes, a phenomenon called ‘dissociative behaviour’. To explore the potential of P. aeruginosa to change its morphotype by single step loss-of–function mutagenesis, a signature-tagged mini-Tn5 plasposon library of the cystic fibrosis airway isolate TBCF10839 was screened for colony morphology variants under nine different conditions in vitro. Transposon insertion into 1% of the genome changed colony morphology into eight discernable morphotypes. Half of the 55 targets encode features of primary or secondary metabolism whereby quinolone production was frequently affected. In the other half the transposon had inserted into genes of the functional categories transport, regulation or motility/chemotaxis. To mimic dissociative behaviour of isogenic strains in lungs, pools of 25 colony morphology variants were tested for competitive fitness in an acute murine airway infection model. Six of the 55 mutants either grew better or worse in vivo than in vitro, respectively. Metabolic proficiency of the colony morphology variant was a key determinant for survival in murine airways. The most common morphotype of self-destructive autolysis did unexpectedly not impair fitness. Transposon insertions into homologous genes of strain PAO1 did not reproduce the TBCF10839 mutant morphotypes for 16 of 19 examined loci pointing to an important role of the genetic background on colony morphology. Depending on the chosen P. aeruginosa strain, functional genome scans will explore other areas of the evolutionary landscape. Based on our discordant findings of mutant phenotypes in P. aeruginosa strains PAO1, PA14 and TBCF10839, we conclude that the current focus on few reference strains may miss modes of niche adaptation and dissociative behaviour that are relevant for the microevolution of complex traits in the wild

Reclamation status of a degraded pasture based on soil health indicators

Pasture degradation is a concern, especially in susceptible sandy soils for which strategies to recover them must be developed. Microbiological and biochemical soil health indicators are useful in the guindace of soil management practices and sustainable soil use. We assessed the success of threePanicum maximum Jacq. cultivars in the reclamation of a pasture in a sandy Typic Acrudox in the northwest of the state of Paraná, Brazil, based on soil health indicators. On a formerly degraded pasture withUrochloa brizantha (Hochst. ex A. Rich.) R.D. Webster, a trial with threeP. maximum (cv. Massai, Tanzânia, or Mombaça) was conducted. Lime and phosphate were applied at set-up, and mineral N and K as topdressing. A remnant of degraded pasture adjacent to the trial was used as control. Twenty-three chemical, physical, microbiological and biochemical attributes were assessed for the 0-10 cm topsoil. The procedures for reclamation improved most of the indicators of soil health in relation to the degraded pasture, such as soil P, mineral N, microbial biomass C, ammonification rate, dehydrogenase activity and acid phosphatase. CO2 evolution decreased, whereas microbial biomass C increased in the pasture under reclamation, resulting in a lower metabolic quotient (qCO2) that points to a decrease in metabolic stress of the microbial community. The reclamation of the pasture withP. maximum, especially cv. Mombaça, were evidenced by improvements in the microbiological and biochemical soil health indicators, showing a recovery of processes related to C, N and P cycling in the soil

Differential responses to woodland character and landscape context by cryptic bats in urban environments

© 2015 Lintott et al. Urbanisation is one of the most dramatic forms of land use change which relatively few species can adapt to. Determining how and why species respond differently to urban habitats is important in predicting future biodiversity loss as urban areas rapidly expand. Understanding how morphological or behavioural traits can influence species adaptability to the built environment may enable us to improve the effectiveness of conservation efforts. Although many bat species are able to exploit human resources, bat species richness generally declines with increasing urbanisation and there is considerable variation in the responses of different bat species to urbanisation. Here, we use acoustic recordings from two cryptic, and largely sympatric European bat species to assess differential responses in their use of fragmented urban woodland and the surrounding urban matrix. There was a high probability of P. pygmaeus activity relative to P. pipistrellus in woodlands with low clutter and understory cover which were surrounded by low levels of built environment. Additionally, the probability of recording P. pygmaeus relative to P. pipistrellus was considerably higher in urban woodland interior or edge habitat in contrast to urban grey or non-wooded green space. These results show differential habitat use occurring between two morphologically similar species; whilst the underlying mechanism for this partitioning is unknown it may be driven by competition avoidance over foraging resources. Their differing response to urbanisation indicates the difficulties involved when attempting to assess how adaptable a species is to urbanisation for conservation purposes

The effects of the cluster environment on the galaxy mass-size relation in MACS J1206.2-0847

The dense environment of galaxy clusters strongly influences the nature of galaxies. Their abundance and diversity is imprinted on the stellar-mass–size plane. Here, we study the cause of the size distribution of a sample of 560 spectroscopic members spanning a wide dynamical range down to 108.5 M (log (M)-2) in the massive CLASH cluster MACSJ1206.2-0847 at z=0.44. We use Subaru SuprimeCam imaging covering the highest-density core out to the infall regions (3 virial radii) to look for cluster-specific effects on a global scale. We also compare our measurements to a compatible large field study in order to span extreme environmental densities. This paper presents the trends we identified for cluster galaxies divided by their colors into star forming and quiescent galaxies and into distinct morphological types (using Sérsic index and bulge/disk decompositions). We observed larger sizes for early-type galaxies and smaller sizes for massive late-type galaxies in clusters in comparison to the field. We attribute this to longer quenching timescales of more massive galaxies in the cluster. Our analysis further revealed an increasing importance of recently quenched transition objects (“red disks”), where the correspondence between galaxy morphology and color is out of sync. This is a virialized population with sizes similar to the quiescent, spheroid-dominated population of the cluster center, but with disks still in-tact, and found at higher cluster-centric radii. The mass-size relation of cluster galaxies may therefore be understood as the consequence of a mix of progenitors formed at different quenching epochs. We also investigate the stellar-mass–size relation as a representation of galaxy sizes smoothly decreasing as a function of bulge fraction. We find that at an identical bulge-to-total ratio and identical stellar mass, quiescent galaxies are smaller than star forming galaxies. This is likely because of a fading of the outskirts of the disk, which we saw in comparing sizes of their disk-components. Ram-pressure stripping of the cold gas and other forms of more gradual gas starvation are likely responsible for this observation

Rhamnolipids: diversity of structures, microbial origins and roles

Rhamnolipids are glycolipidic biosurfactants produced by various bacterial species. They were initially found as exoproducts of the opportunistic pathogen Pseudomonas aeruginosa and described as a mixture of four congeners: α-L-rhamnopyranosyl-α-L-rhamnopyranosyl-β-hydroxydecanoyl-β-hydroxydecanoate (Rha-Rha-C10-C10), α-L-rhamnopyranosyl-α-L-rhamnopyranosyl-β-hydroxydecanoate (Rha-Rha-C10), as well as their mono-rhamnolipid congeners Rha-C10-C10 and Rha-C10. The development of more sensitive analytical techniques has lead to the further discovery of a wide diversity of rhamnolipid congeners and homologues (about 60) that are produced at different concentrations by various Pseudomonas species and by bacteria belonging to other families, classes, or even phyla. For example, various Burkholderia species have been shown to produce rhamnolipids that have longer alkyl chains than those produced by P. aeruginosa. In P. aeruginosa, three genes, carried on two distinct operons, code for the enzymes responsible for the final steps of rhamnolipid synthesis: one operon carries the rhlAB genes and the other rhlC. Genes highly similar to rhlA, rhlB, and rhlC have also been found in various Burkholderia species but grouped within one putative operon, and they have been shown to be required for rhamnolipid production as well. The exact physiological function of these secondary metabolites is still unclear. Most identified activities are derived from the surface activity, wetting ability, detergency, and other amphipathic-related properties of these molecules. Indeed, rhamnolipids promote the uptake and biodegradation of poorly soluble substrates, act as immune modulators and virulence factors, have antimicrobial activities, and are involved in surface motility and in bacterial biofilm development

The Role of Content and Context in PISA Interest Scales: A study of the embedded interest items in the PISA 2006 science assessment

International audienceThis paper focuses interest in science as one of the attitudinal aspects of scientific literacy. Large-scale data from the Programme for International Student Assessment (PISA) 2006 are analysed in order to describe student interest more precisely. So far the analyses have provided a general indicator of interest, aggregated over all contexts and contents in the science test (Organisation for Economic Co-operation and Development [OECD], 2007a; Prenzel, Schütte, & Walter, 2007).With its innovative approach PISA embeds interest items within the cognitive test unit and its contents and contexts. The main difference from conventional interest measures is that in most questionnaires, a relatively small number of interest items cover broad fields of contents and contexts. The science units represent a number of systematically differentiated scientific contexts and contents. The units' stimulus texts allow for concrete descriptions of relevant content aspects, applications and contexts. In the analyses, multidimensional item response models are applied in order to disentangle student interest. The results indicate that multidimensional models fit the data. A two-dimensional model separating interest into two different knowledge of science dimensions described in the PISA science framework is further analysed with respect to gender, performance differences and country. The findings give a comprehensive description of students' interest in science. The paper deals with methodological problems and describes requirements of the test construction for further assessments. The results are discussed with regard to their significance for science education