Doping and temperature dependence of electron spectrum and quasiparticle dispersion in doped bilayer cuprates

Within the t-t'-J model, the electron spectrum and quasiparticle dispersion in doped bilayer cuprates in the normal state are discussed by considering the bilayer interaction. It is shown that the bilayer interaction splits the electron spectrum of doped bilayer cuprates into the bonding and antibonding components around the $(\pi,0)$ point. The differentiation between the bonding and antibonding components is essential, which leads to two main flat bands around the $(\pi,0)$ point below the Fermi energy. In analogy to the doped single layer cuprates, the lowest energy states in doped bilayer cuprates are located at the $(\pi/2,\pi/2)$ point. Our results also show that the striking behavior of the electronic structure in doped bilayer cuprates is intriguingly related to the bilayer interaction together with strong coupling between the electron quasiparticles and collective magnetic excitations.Comment: 9 pages, 4 figures, updated references, added figures and discussions, accepted for publication in Phys. Rev.

Structure, Dynamics, and Branch Migration of a DNA Holliday Junction: A Single-Molecule Fluorescence and Modeling Study

AbstractThe Holliday junction (HJ) is a central intermediate of various genetic processes, including homologous and site-specific DNA recombination and DNA replication. Elucidating the structure and dynamics of HJs provides the basis for understanding the molecular mechanisms of these genetic processes. Our previous single-molecule fluorescence studies led to a model according to which branch migration is a stepwise process consisting of consecutive migration and folding steps. These data led us to the conclusion that one hop can be more than 1 basepair (bp); moreover, we hypothesized that continuous runs over the entire sequence homology (5 bp) can occur. Direct measurements of the dependence of the fluorescence resonance energy transfer (FRET) value on the donor-acceptor (D-A) distance are required to justify this model and are the major goal of this article. To accomplish this goal, we performed single-molecule FRET experiments with a set of six immobile HJ molecules with varying numbers of bps between fluorescent dyes placed on opposite arms. The designs were made in such a way that the distances between the donor and acceptor were equal to the distances between the dyes formed upon 1-bp migration hops of a HJ having 10-bp homology. Using these designs, we confirmed our previous hypothesis that the migration of the junction can be measured with bp accuracy. Moreover, the FRET values determined for each acceptor-donor separation corresponded very well to the values for the steps on the FRET time trajectories, suggesting that each step corresponds to the migration of the branch at a defined depth. We used the dependence of the FRET value on the D-A distance to measure directly the size for each step on the FRET time trajectories. These data showed that one hop is not necessarily 1 bp. The junction is able to migrate over several bps, detected as one hop and confirming our model. The D-A distances extracted from the FRET properties of the immobile junctions formed the basis for modeling the HJ structures. The composite data fit a partially opened, side-by-side model with adjacent double-helical arms slightly kinked at the four-way junction and the junction as a whole adopting a global X-shaped form that mimics the coaxially stacked-X structure implicated in previous solution studies

Reverse Engineering of Computer-Based Navy Systems

The financial pressure to meet the need for change in computer-based systems through evolution rather than through revolution has spawned the discipline of reengineering. One driving factor of reengineering is that it is increasingly becoming the case that enhanced requirements placed on computer-based systems are overstressing the processing resources of the systems. Thus, the distribution of processing load over highly parallel and distributed hardware architectures has become part of the reengineering process for computer-based Navy systems. This paper presents an intermediate representation (IR) for capturing features of computer-based systems to enable reengineering for concurrency. A novel feature of the IR is that it incorporates the mission critical software architecture, a view that enables information to be captured at five levels of granularity: the element/program level, the task level, the module/class/package level, the method/procedure level, and the statement/instruction level. An approach to reverse engineering is presented, in which the IR is captured, and is analyzed to identify potential concurrency. Thus, the paper defines concurrency metrics to guide the reengineering tasks of identifying, enhancing, and assessing concurrency, and for performing partitioning and assignment. Concurrency metrics are defined at several tiers of the mission critical software architecture. In addition to contributing an approach to reverse engineering for computer-based systems, the paper also discusses a reverse engineering analysis toolset that constructs and displays the IR and the concurrency metrics for Ada programs. Additionally, the paper contains a discussion of the context of our reengineering efforts within the United States Navy, by describing two reengineering projects focused on sussystems of the AEGIS Weapon System

Triblock Copolymer as an Effective Membrane-Sealing Material

An intact cell membrane serves as a permeable barrier, regulating the influx and efflux of ions and small molecules. When the integrity of the membrane is compromised, its barrier function is also disrupted, threatening the survival of the cell. Triblock copolymer surfactants of the form poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) have been shown to help seal structurally damaged membranes, arresting the leakage of intracellular materials. In order to understand how this particular family of triblock copolymers helps seal damaged membranes, model lipid monolayer and bilayer systems have been used to unravel the nature of the lipid/copolymer interaction. The copolymer surfactant is found to selectively insert into structurally compromised membranes, thus localizing its sealing effect on the damaged regions. The inserted polymer is “squeezed out” when the lipid packing density is increased, suggesting a mechanism for the cell to be rid of the polymer when the membrane integrity is restored

As the Duck Flies—Estimating the Dispersal of Low-Pathogenic Avian Influenza Viruses by Migrating Mallards

Many pathogens rely on the mobility of their hosts for dispersal. In order to understand and predict how a disease can rapidly sweep across entire continents, illuminating the contributions of host movements to disease spread is pivotal. While elegant proposals have been made to elucidate the spread of human infectious diseases, the direct observation of long-distance dispersal events of animal pathogens is challenging. Pathogens like avian influenza A viruses, causing only short disease in their animal hosts, have proven exceptionally hard to study. Here, we integrate comprehensive data on population and disease dynamics for low-pathogenic avian influenza viruses in one of their main hosts, the mallard, with a novel movement model trained from empirical, high-resolution tracks of mallard migrations. This allowed us to simulate individual mallard migrations from a key stopover site in the Baltic Sea for the entire population and link these movements to infection simulations. Using this novel approach, we were able to estimate the dispersal of low-pathogenic avian influenza viruses by migrating mallards throughout several autumn migratory seasons and predicted areas that are at risk of importing these viruses. We found that mallards are competent vectors and on average dispersed viruses over distances of 160 km in just 3 h. Surprisingly, our simulations suggest that such dispersal events are rare even throughout the entire autumn migratory season. Our approach directly combines simulated population-level movements with local infection dynamics and offers a potential converging point for movement and disease ecology

An allosteric modulator activates BK channels by perturbing coupling between Ca2+ binding and pore opening

BK type C

Why do authoritarian regimes provide public goods? Policy communities, external shocks and ideas in China’s rural social policy making

Recent research on authoritarian regimes argues that they provide public goods in order to prevent rebellion. This essay shows that the ‘threat of rebellion’ alone cannot explain Chinese party-state policies to extend public goods to rural residents in the first decade of the twenty-first century. Drawing on theories of policy making, it argues that China’s one-party regime extended public goods to the rural population under the influence of ideas and policy options generated by policy communities of officials, researchers, international organisations and other actors. The party-state centre adopted and implemented these ideas and policy options when they provided solutions to external shocks and supported economic development goals. Explanations of policies and their outcomes in authoritarian political systems need to include not only ‘dictators’ but also other actors, and the ideas they generate

Decay-accelerating factor expression in the rat kidney is restricted to the apical surface of podocytes

Decay-accelerating factor expression in the rat kidney is restricted to the apical surface of podocytes.BackgroundDecay-accelerating factor (DAF) has inhibitory activity toward complement C3 and C5 convertases. DAF is present in human glomeruli and on cultured human glomerular visceral epithelial cells (GEC). We studied the distribution and function of rat DAF.MethodsFunction-neutralizing antibodies (Abs) were raised against DAF. The distribution of DAF in vivo was determined by immunoelectron microscopy. Functional studies were performed in cultured GEC and following IV injection of anti-DAF Abs into rats.ResultsDAF was present exclusively on the apical surfaces of GEC, and was not present on the basal surfaces of GEC, nor other glomerular or kidney cells. DAF was functionally active on cultured GEC, and served to limit complement activation in concert with CD59, an inhibitor of C5b-9 formation. Upon injection into normal rats, anti-DAF F(ab′)2 Abs bound to GEC in vivo, yet there was no evidence for complement activation and animals did not develop abnormal albuminuria. Anti-megalin complement-activating IgG Abs were “planted” on GEC, which activated complement as evidenced by the presence of C3d on GEC. Attempts to inhibit DAF function with anti-DAF Abs did not affect the quantity of complement activation by these anti-megalin Abs, nor did it lead to development of abnormal albuminuria. In contrast, in the puromycin aminonucleoside model of GEC injury and proteinuria, anti-DAF Abs slowed the recovery from renal failure that occurs in this model.ConclusionIn cultured rat GEC, DAF is an effective complement regulator. In vivo, DAF is present on GEC apical surfaces. Yet, it appears that DAF is not essential to prevent complement activation from occurring under normal circumstances and in those cases in which complement-activating Abs are present on the basal surfaces of GEC in vivo. However, in proteinuric conditions, DAF appears to be protective to GEC

Deletion of cytosolic gating ring decreases gate and voltage sensor coupling in BK channels

Large conductance Ca(2+)-activated K(+) channels (BK channels) gate open in response to both membrane voltage and intracellular Ca(2+). The channel is formed by a central pore-gate domain (PGD), which spans the membrane, plus transmembrane voltage sensors and a cytoplasmic gating ring that acts as a Ca(2+) sensor. How these voltage and Ca(2+) sensors influence the common activation gate, and interact with each other, is unclear. A previous study showed that a BK channel core lacking the entire cytoplasmic gating ring (Core-MT) was devoid of Ca(2+) activation but retained voltage sensitivity (Budelli et al. 2013. Proc. Natl. Acad. Sci. USA. http://dx.doi.org/10.1073/pnas.1313433110). In this study, we measure voltage sensor activation and pore opening in this Core-MT channel over a wide range of voltages. We record gating currents and find that voltage sensor activation in this truncated channel is similar to WT but that the coupling between voltage sensor activation and gating of the pore is reduced. These results suggest that the gating ring, in addition to being the Ca(2+) sensor, enhances the effective coupling between voltage sensors and the PGD. We also find that removal of the gating ring alters modulation of the channels by the BK channel’s β1 and β2 subunits