WIYN Imaging of the Globular Cluster Systems of the Spiral Galaxies NGC891 and NGC4013

We present results from a WIYN 3.5m telescope imaging study of the globular cluster (GC) systems of the edge-on spiral galaxies NGC891 and NGC4013. We used the 10' x 10' Minimosaic Imager to observe the galaxies in BVR filters to projected radii of ~20 kpc from the galaxy centers. We combined the WIYN data with archival and published data from WFPC2 and ACS on the Hubble Space Telescope to assess the contamination level of the WIYN GC candidate sample and to follow the GC systems further in toward the galaxies' centers. We constructed radial distributions for the GC systems using both the WIYN and HST data. The GC systems of NGC891 and NGC4013 extend to 9+/-3 kpc and 14+/-5 kpc, respectively, before falling off to undetectable levels in our images. We use the radial distributions to calculate global values for the total number (N_GC) and specific frequencies (S_N and T) of GCs. NGC4013 has N_GC = 140+/-20, S_N = 1.0+/-0.2 and T = 1.9+/-0.5; our N_GC value is ~40% smaller than a previous determination from the literature. The HST data were especially useful for NGC891, because the GC system is concentrated toward the plane of the galaxy and was only weakly detected in our WIYN images. Although NGC891 is thought to resemble the Milky Way in its overall properties, it has only half as many GCs, with N_GC = 70+/-20, S_N = 0.3+/-0.1 and T = 0.6+/-0.3. We also calculate the galaxy-mass-normalized number of blue (metal-poor) GCs in NGC891 and NGC4013 and find that they fall along a general trend of increasing specific frequency of blue GCs with increasing galaxy mass. Given currently available resources, the optimal method for studying the global properties of extragalactic GC systems is to combine HST data with wide-field, ground-based imaging with good resolution. The results here demonstrate the advantage gained by using both methods when possible.Comment: 43 pages, 11 figures 6 tables; accepted to The Astronomical Journal. Online AJ version at http://iopscience.iop.org/1538-3881/140/2/430

AAOmega spectroscopy of 29 351 stars in fields centered on ten Galactic globular clusters

Galactic globular clusters have been pivotal in our understanding of many astrophysical phenomena. Here we publish the extracted stellar parameters from a recent large spectroscopic survey of ten globular clusters. A brief review of the project is also presented. Stellar parameters have been extracted from individual stellar spectra using both a modified version of the Radial Velocity Experiment (RAVE) pipeline and a pipeline based on the parameter estimation method of RAVE. We publish here all parameters extracted from both pipelines. We calibrate the metallicity and convert this to [Fe/H] for each star and, furthermore, we compare the velocities and velocity dispersions of the Galactic stars in each field to the Besan\c{c}on Galaxy model. We find that the model does not correspond well with the data, indicating that the model is probably of little use for comparisons with pencil beam survey data such as this.Comment: 6 pages, 5 figures, 4 tables. Accepted for publication in A&A. Data described in tables will be available on CDS (at http://cdsweb.u-strasbg.fr/cgi-bin/qcat?J/A+A/530/A31) once publishe

Globular cluster formation within the Aquarius simulation

The Aquarius project is a very high-resolution simulation capable of resolving the full mass range of potential globular cluster (GC) formation sites. With a particle mass mp= 1.4 × 104 M¿, Aquarius yields more than 100 million particles within the virial radius of the central halo which has a mass of 1.8 × 1012 M¿, similar to that of the Milky Way. With this particle mass, dark matter concentrations (haloes) that give rise to GCs via our formation criteria contain a minimum of ~2000 particles. Here, we use this simulation to test a model of metal-poor GC formation based on collapse physics. In our model, GCs form when the virial temperatures of haloes first exceed 104 K as this is when electronic transitions allow the gas to cool efficiently. We calculate the ionizing flux from the stars in these first clusters and stop the formation of new clusters when all the baryonic gas of the Galaxy is ionized. This is achieved by adopting reasonable values for the star formation efficiencies and escape fraction of ionizing photons which result in similar numbers and masses of clusters to those found in the Milky Way. The model is successful in that it predicts ages (peak age ~13.3 Gyr) and a spatial distribution of metal-poor GCs which are consistent with the observed populations in the Milky Way. The model also predicts that less than 5 per cent of GCs within a radius of 100 kpc have a surviving dark matter halo, but the more distant clusters are all found in dark matter concentrations. We then test a scenario of metal-rich cluster formation by examining mergers that trigger star formation within central gas discs. This results in younger (~7¿13.3 Gyr), more centrally located clusters (40 metal-rich GCs within 18 kpc from the centre of the host) which are consistent with the Galactic metal-rich population. We test an alternate model in which metal-rich GCs form in dwarf galaxies that become stripped as they merge with the main halo. This process is inconsistent with observed metal-rich globulars in the Milky Way because it predicts spatial distributions that are far too extended

RPPA-based proteomics recognizes distinct epigenetic signatures in chronic lymphocytic leukemia with clinical consequences

The chronic lymphocytic leukemia (CLL) armamentarium has evolved significantly, with novel therapies that inhibit Bruton Tyrosine Kinase, PI3K delta and/or the BCL2 protein improving outcomes. Still, the clinical course of CLL patients is highly variable and most previously recognized prognostic features lack the capacity to predict response to modern treatments indicating the need for new prognostic markers. In this study, we identified four epigenetically distinct proteomic signatures of a large cohort of CLL and related diseases derived samples (n = 871) using reverse phase protein array technology. These signatures are associated with clinical features including age, cytogenetic abnormalities [trisomy 12, del(13q) and del(17p)], immunoglobulin heavy-chain locus (IGHV) mutational load, ZAP-70 status, Binet and Rai staging as well as with the outcome measures of time to treatment and overall survival. Protein signature membership was identified as predictive marker for overall survival regardless of other clinical features. Among the analyzed epigenetic proteins, EZH2, HDAC6, and loss of H3K27me3 levels were the most independently associated with poor survival. These findings demonstrate that proteomic based epigenetic biomarkers can be used to better classify CLL patients and provide therapeutic guidance

Dysbiotic Subgingival Microbial Communities in Periodontally Healthy Patients With Rheumatoid Arthritis

Objective: Studies that demonstrate an association between rheumatoid arthritis (RA) and dysbiotic oral microbiomes are often confounded by the presence of extensive periodontitis in these individuals. This study was undertaken to investigate the role of RA in modulating the periodontal microbiome by comparing periodontally healthy individuals with RA to those without RA. Methods: Subgingival plaque was collected from periodontally healthy individuals (22 with RA and 19 without RA), and the 16S gene was sequenced on an Illumina MiSeq platform. Bacterial biodiversity and co‐occurrence patterns were examined using the QIIME and PhyloToAST pipelines. Results: The subgingival microbiomes differed significantly between patients with RA and controls based on both community membership and the abundance of lineages, with 41.9% of the community differing in abundance and 19% in membership. In contrast to the sparse and predominantly congeneric co‐occurrence networks seen in controls, RA patients revealed a highly connected grid containing a large intergeneric hub anchored by known periodontal pathogens. Predictive metagenomic analysis (PICRUSt) demonstrated that arachidonic acid and ester lipid metabolism pathways might partly explain the robustness of this clustering. As expected from a periodontally healthy cohort, Porphyromonas gingivalis and Aggregatibacter actinomycetemcomitans were not significantly different between groups; however, Cryptobacterium curtum, another organism capable of producing large amounts of citrulline, emerged as a robust discriminant of the microbiome in individuals with RA. Conclusion: Our data demonstrate that the oral microbiome in RA is enriched for inflammophilic and citrulline‐producing organisms, which may play a role in the production of autoantigenic citrullinated peptides in RA

Early life height and weight production functions with endogenous energy and protein inputs

We examine effects of protein and energy intakes on height and weight growth for children between 6 and 24 months old in Guatemala and the Philippines. Using instrumental variables to control for endogeneity and estimating multiple specifications, we find that protein intake plays an important and positive role in height and weight growth in the 6-24 month period. Energy from other macronutrients, however, does not have a robust relation with these two anthropometric measures. Our estimates indicate that in contexts with substantial child undernutrition, increases in protein-rich food intake in the first 24 months can have important growth effects, which previous studies indicate are related significantly to a range of outcomes over the life cycl

A randomised clinical study to determine the effect of a toothpaste containing enzymes and proteins on plaque oral microbiome ecology

The numerous species that make up the oral microbiome are now understood to play a key role in establishment and maintenance of oral health. The ability to taxonomically identify community members at the species level is important to elucidating its diversity and association to health and disease. We report the overall ecological effects of using a toothpaste containing enzymes and proteins compared to a control toothpaste on the plaque microbiome. The results reported here demonstrate that a toothpaste containing enzymes and proteins can augment natural salivary defences to promote an overall community shift resulting in an increase in bacteria associated with gum health and a concomitant decrease in those associated with periodontal disease. Statistical analysis shows significant increases in 12 taxa associated with gum health including Neisseria spp. and a significant decrease in 10 taxa associated with periodontal disease including Treponema spp. The results demonstrate that a toothpaste containing enzymes and proteins can significantly shift the ecology of the oral microbiome (at species level) resulting in a community with a stronger association to health

Facilitation and Competition among Invasive Plants: A Field Experiment with Alligatorweed and Water Hyacinth

Ecosystems that are heavily invaded by an exotic species often contain abundant populations of other invasive species. This may reflect shared responses to a common factor, but may also reflect positive interactions among these exotic species. Armand Bayou (Pasadena, TX) is one such ecosystem where multiple species of invasive aquatic plants are common. We used this system to investigate whether presence of one exotic species made subsequent invasions by other exotic species more likely, less likely, or if it had no effect. We performed an experiment in which we selectively removed exotic rooted and/or floating aquatic plant species and tracked subsequent colonization and growth of native and invasive species. This allowed us to quantify how presence or absence of one plant functional group influenced the likelihood of successful invasion by members of the other functional group. We found that presence of alligatorweed (rooted plant) decreased establishment of new water hyacinth (free-floating plant) patches but increased growth of hyacinth in established patches, with an overall net positive effect on success of water hyacinth. Water hyacinth presence had no effect on establishment of alligatorweed but decreased growth of existing alligatorweed patches, with an overall net negative effect on success of alligatorweed. Moreover, observational data showed positive correlations between hyacinth and alligatorweed with hyacinth, on average, more abundant. The negative effect of hyacinth on alligatorweed growth implies competition, not strong mutual facilitation (invasional meltdown), is occurring in this system. Removal of hyacinth may increase alligatorweed invasion through release from competition. However, removal of alligatorweed may have more complex effects on hyacinth patch dynamics because there were strong opposing effects on establishment versus growth. The mix of positive and negative interactions between floating and rooted aquatic plants may influence local population dynamics of each group and thus overall invasion pressure in this watershed

Flexible prey handling, preference and a novel capture technique in invasive, sub-adult Chinese mitten crabs

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