Heritability estimation via molecular pedigree reconstruction in a wild fish population reveals substantial evolutionary potential for sea age at maturity, but not size within age classes

While evolutionary responses require heritable variation, estimates of heritability (h(2)) from wild fish populations remain rare. A 20-year molecular pedigree for a wild Scottish population of Atlantic salmon (Salmo salar) was used to investigate genetic contributions to (co) variation in two important, correlated, phenotypic traits: "sea age" (number of winters spent at sea prior to spawning) and size-at-maturity (body length just prior to spawning). Sea age was strongly heritable (h(2) = 0.51) and size exhibited moderate heritability (h(2) = 0.27). A very strong genetic correlation (r(G) = 0.96) between these traits implied the same functional loci must underpin variation in each. Indeed, body size within sea ages had much lower heritability that did not differ significantly from zero. Thus, within wild S. salar populations, temporal changes in sea age composition could reflect evolutionary responses, whereas rapid changes of body size within sea ages are more likely due to phenotypic plasticity. These inheritance patterns will influence the scope of evolutionary responses to factors such as harvest or climate change and, hence, have management implications for salmonid populations comprising a mix of sea ages.Peer reviewe

Inferring individual marine migration from otolith ecogeochemical signatures of a wide-ranging fish

Despite technical advances in archival tag attachment and functional longevity, long-term tracking of individuals of some fish species remains prohibitively difficult. Here we combined high resolution stable isotope sampling of otoliths, genetic assignment, growth increment analyses and a simple movement model to inform a hidden Markov model of the location of individual wild Atlantic salmon (Salmo salar L.) at sea. The model provided a reconstruction of North Atlantic migration for a species which is extremely difficult to track throughout its marine life-stage. We show that plausible emigration and return migration patterns can be achieved from wild fish. Simulations of simplified northward and westward movement patterns in the North Atlantic were used to quantify precision and accuracy of the model which differed between these two directional scenarios. Because otolith-derived migratory information does not rely on capture, release and subsequent recapture of the individual, this can be retrieved from any fish. Thus these techniques offer a powerful tool for improving our understanding of the processes that govern movement and survival of individual fish during a protracted and largely unobservable life-stage in the oceanic environment

Genetic stock identification reveals greater use of an oceanic feeding ground around the Faroe Islands by multi-sea winter Atlantic salmon, with variation in use across reporting groups

While it is known that the oceans around the Faroe Islands support an Atlantic salmon (Salmo salar) feeding ground, the relative use of this resource by different age classes and populations remains largely unexplored. Using genetic stock identification and run-reconstruction modelling, we observed a consistent pattern whereby the proportion of multi-sea winter salmon (MSW-fish that have spent multiple winters at sea) for a reporting group was substantially greater around the Faroes than the MSW proportion among that group's corresponding pre-fisheries abundance. Surprisingly, MSW fish from Ireland and the United Kingdom were as likely to occur around the Faroes as were MSW fish from more north-eastern regions. While 1SW salmon (single sea-winter fish) from Ireland and the United Kingdom as well as Southern Norway occurred in similar proportions around the Faroes, 1SW fish from the north-eastern regions were virtually absent. Our results indicate that the oceans around the Faroes host a predominantly MSW feeding ground and use of this resource varies across age classes and reporting groups. Furthermore, these results suggest that MSW fish from some reporting groups preferentially migrate to the Faroes. Variation in spatial resource use may help buffer salmon populations against localized negative changes in marine conditions via portfolio effects.Peer reviewe

Genetic stock identification reveals greater use of an oceanic feeding ground around the Faroe Islands by multi-sea winter Atlantic salmon, with variation in use across reporting groups

While it is known that the oceans around the Faroe Islands support an Atlantic salmon (Salmo salar) feeding ground, the relative use of this resource by different age classes and populations remains largely unexplored. Using genetic stock identification and run–reconstruction modelling, we observed a consistent pattern whereby the proportion of multi-sea winter salmon (MSW—fish that have spent multiple winters at sea) for a reporting group was substantially greater around the Faroes than the MSW proportion among that group’s corresponding pre-fisheries abundance. Surprisingly, MSW fish from Ireland and the United Kingdom were as likely to occur around the Faroes as were MSW fish from more north-eastern regions. While 1SW salmon (single sea-winter fish) from Ireland and the United Kingdom as well as Southern Norway occurred in similar proportions around the Faroes, 1SW fish from the north-eastern regions were virtually absent. Our results indicate that the oceans around the Faroes host a predominantly MSW feeding ground and use of this resource varies across age classes and reporting groups. Furthermore, these results suggest that MSW fish from some reporting groups preferentially migrate to the Faroes. Variation in spatial resource use may help buffer salmon populations against localized negative changes in marine conditions via portfolio effects

Ogni Pensiero Vola: the embodied psyche in Terrence Malick's The Tree of Life

The Tree of Lifetouches on embodiment of the soul in an early sequence covering courtship, marriage and the first pregnancy of a young couple. In a delicate formal scene, Mrs O'Brien, nearing full term, treads gently along a river's edge summoning infant souls luminous in white linen. She opens a minute book of life to one of them, preparing his entry through the iron gates that open on embodied life. Presently, the infant soul rises up from his underwater home beyond the reach of conscious awareness: Mrs O'Brien gives birth to her first son, Jack. This is the boy who will eventually become a middle-aged man in crisis. Ravaged then by grief for his long-dead younger brother and his own inability to live at peace with his family or himself, his memories, visions and reflections accumulate in a way that makes him a suffering Hermes for the early twenty-first century. The initiating episode of the infant's birth complements the embodied and affective experiences of those in the audience who accept the film's sensual invitation to steep themselves in the immense scale of its gorgeous sounds and images. They then discover on the pulse that, more than the history of one Texan family, it attempts nothing less than the necessary re-creation of the godhead for the early twenty-first century. Contrary to the rigid medieval dogmas of so many orthodox religions,The Tree of Lifeassures us not of a changeless eternity but rather the sacred and ceaseless metamorphosis of numinous energy

A microsatellite baseline for genetic stock identification of European Atlantic salmon (Salmo salar L.)

Atlantic salmon (Salmo salar L.) populations from different river origins mix in the North Atlantic during the marine life stage. To facilitate marine stock identification, we developed a genetic baseline covering the European component of the species’ range excluding the Baltic Sea, from the Russian River Megra in the north-east, the Icelandic Ellidaar in the west, and the Spanish Ulla in the south, spanning 3737 km North to South and 2717 km East to West. The baseline encompasses data for 14 microsatellites for 26 822 individual fish from 13 countries, 282 rivers, and 467 sampling sites. A hierarchy of regional genetic assignment units was defined using a combination of distance-based and Bayesian clustering. At the top level, three assignment units were identified comprising northern, southern, and Icelandic regions. A second assignment level was also defined, comprising eighteen and twenty-nine regional units for accurate individual assignment and mixed stock estimates respectively. The baseline provides the most comprehensive geographical coverage for an Atlantic salmon genetic data-set, and a unique resource for the conservation and management of the species in Europe. It is freely available to researchers to facilitate identification of the natal origin of European salmon

Genetics And Introgression: The Use Of Genetics And Genomics To Manage Interactions Between Wild And Non-Native Atlantic Salmon.

Atlantic salmon in Europe inhabit a diverse range of habitats: from cold northern to warm southern rivers, from high mountain streams to lowland farmland, and from rich eutrophic to nutrient poor oligotrophic waters. Such diversity in environments brings with it diversity in selection pressures and, over time, results in diversity in life history characteristics and associated local adaptations. Different selective pressures and adaptive responses are seen when fish are reared in non-natural environments such as hatcheries. Whilst for fish used for stocking, a hatchery may aim to retain as much wild natural genetic variation as possible, selection for traits associated with a domesticated environment is still a significant, if unintentional, force. In contrast, for those fish used in aquaculture, directional selection for commercially advantageous traits is the main aim of breeding programmes. In both of these situations the results of selection may reduce the fitness of fish in a wild situation, and, if subsequent interactions occur, hybridisation and introgression of the non-native genomes into the wild can decrease the fitness of hybrid individuals and populations as a whole. Genetic and genomic techniques can be used to help managers understand such interactions and so proved a unique approach to potentially reduce the impact of genetic introgression on wild populations. The first and perhaps most important question for managers is what is the proportion of non-native fish present in a system? Genetic approaches can screen wild and non-native stocks and, using techniques such as Genetic Stock Identification, identify the origin of individuals found within a fishery. More sophisticated analysis can allow the proportion of hybrids to be estimated and proportions of admixture determined for individual fish and populations as a whole. Such information can be used for identifying problematic situations thus helping manager’s make informed decisions on both hatchery use and aquaculture facility siting and practices. Whilst such genetic approaches can provide invaluable insights into the interactions between and introgression of non-native genomes into wild populations, they are challenging to undertake in some situations. For example, such techniques may be more problematic where historic reference samples are unavailable, if there are multiple potential sources of non-native fish, and/or if the traditional genetic differences between the non-native stocks and the wild fish are fairly small. Recent advances in genomics may provide new tools to investigate such situations, including the discovery of new markers and studies of epigenetic changes.peerReviewe