Anthropogenic disturbance and evolutionary parameters: a lemon shark population experiencing habitat loss

The level of genetic variation in natural populations influences evolutionary potential, and may therefore influence responses to selection in the face of future environmental changes. By combining long-term monitoring of marked individuals with genetic pedigree reconstruction, we assessed whether habitat loss influenced genetic variation in a lemon shark (Negaprion brevirostris) population at an isolated nursery lagoon (Bimini, Bahamas). We also tracked changes in the strength and direction of natural selection. Contrary to initial expectations, we found that after the habitat loss neutral genetic variation increased, as did additive genetic variance for juvenile morphological traits (body length and mass). We hypothesize that these effects might result from philopatric behavior in females coupled with a possible influx of male genotypes from other nursery sites. We also found changes in the strength of selection on morphological traits, which weakened considerably after the disturbance; habitat loss therefore changed the phenotypes favored by natural selection. Because such human-induced shifts in the adaptive landscape may be common, we suggest that conservation biologists should not simply focus on neutral genetic variation per se, but also on assessing and preserving evolutionary parameters, such as additive genetic variation and selection

Effects of blood parasite infection and innate immune genetic diversity on mating patterns in a passerine bird breeding in contrasted habitats

Genetic diversity at immune genes and levels of parasitism are known to affect patterns of (dis)assortative mating in several species. Heterozygote advantage and/or good genes should shape mate choice originating from pathogen/parasite-driven selection at immune genes. However, the stability of these associations, and whether they vary with environmental conditions, are still rarely documented. In this study, we describe mating patterns in a wild population of tree swallows (Tachycineta bicolor) over 4 years and assess the effects of haemosporidian parasite infection and immune genetic diversity at β-defensin genes on those patterns within two habitats of contrasting environmental quality, in southern Québec, Canada. We first show that mating patterns were only very weakly related to individual status of infection by haemosporidian parasites. However, we found a difference between habitats in mating patterns related to infection status, which was likely due to a non-random distribution of individuals, as non-infected mating pairs were more frequent in lower quality habitats. Mating patterns also differed depending on β-defensin heterozygosity at AvBD2, but only for genetic partners outside of the social couple, with heterozygous individuals pairing together. Our study underlines the importance of considering habitat heterogeneity in studies of sexual selection

Offspring mass variation in tree swallows : a case of bet‐hedging?

The evolution of reproductive strategies is affected by the ability of organisms to deal with future environmental conditions. When environments are temporally unpredictable, however, it is difficult to anticipate optimal offspring phenotype. Diversification of offspring phenotypes, a strategy called diversified bet‐hedging, may allow parents to maximize their fitness by reducing between‐year variation in reproductive success. The link between diversification of offspring phenotypes and individual reproductive success, however, has rarely been documented empirically. We used an eight‐year dataset (1215 broods, 870 females) on individually marked tree swallows ( Tachycineta bicolor ) to assess whether intra‐brood mass variation was compatible with a diversified bet‐hedging strategy. Intra‐brood mass variation was weakly, but significantly repeatable within females, suggesting consistent individual differences. Greater intra‐brood mass variation, however, was not associated with reduced between‐year variation in reproductive success or increased female reproductive success. Moreover, contrary to diversified bet‐hedging expectations, fledging success of large broods was greater when hatchlings had similar rather than variable masses. Our results suggest that intra‐brood mass variation may not result from diversified bet‐hedging, but rather from complex interactions between environmental, brood, and maternal characteristics

Constructing and evaluating a continent‐wide migratory songbird network across the annual cycle

Determining how migratory animals are spatially connected between breeding and non‐breeding periods is essential for predicting the effects of environmental change and for developing optimal conservation strategies. Yet, despite recent advances in tracking technology, we lack comprehensive information on the spatial structure of migratory networks across a species’ range, particularly for small‐bodied, long‐distance migratory animals. We constructed a migratory network for a songbird and used network‐based metrics to characterize the spatial structure and prioritize regions for conservation. The network was constructed using year‐round movements derived from 133 archival light‐level geolocators attached to Tree Swallows (Tachycineta bicolor) originating from 12 breeding sites across their North American breeding range. From these breeding sites, we identified 10 autumn stopover nodes (regions) in North America, 13 non‐breeding nodes located around the Gulf of Mexico, Mexico, Florida, and the Caribbean, and 136 unique edges (migratory routes) connecting nodes. We found strong migratory connectivity between breeding and autumn stopover sites and moderate migratory connectivity between the breeding and non‐breeding sites. We identified three distinct “communities” of nodes that corresponded to western, central, and eastern North American flyways. Several regions were important for maintaining network connectivity, with South Florida and Louisiana as the top ranked non‐breeding nodes and the Midwest as the top ranked stopover node. We show that migratory songbird networks can have both a high degree of mixing between seasons yet still show regionally distinct migratory flyways. Such information will be crucial for accurately predicting factors that limit and regulate migratory songbirds throughout the annual cycle. Our study highlights how network‐based metrics can be valuable for identifying overall network structure and prioritizing specific regions within a network for conserving a wide variety of migratory animals

Archiving primary data: solutions for long-term studies

The recent trend for journals to require open access to primary data included in publications has been embraced by many biologists, but has caused apprehension amongst researchers engaged in long-term ecological and evolutionary studies. A worldwide survey of 73 principal investigators (Pls) with long-term studies revealed positive attitudes towards sharing data with the agreement or involvement of the PI, and 93% of PIs have historically shared data. Only 8% were in favor of uncontrolled, open access to primary data while 63% expressed serious concern. We present here their viewpoint on an issue that can have non-trivial scientific consequences. We discuss potential costs of public data archiving and provide possible solutions to meet the needs of journals and researchers

Data from: An assessment of the reliability of quantitative genetics estimates in study systems with high rate of extra-pair reproduction and low recruitment

Quantitative genetics approaches, and particularly animal models, are widely used to assess the genetic (co)variance of key fitness related traits and infer adaptive potential of wild populations. Despite the importance of precision and accuracy of genetic variance estimates and their potential sensitivity to various ecological and population specific factors, their reliability is rarely tested explicitly. Here, we used simulations and empirical data collected from an 11-year study on tree swallow (Tachycineta bicolor), a species showing a high rate of extra-pair paternity and a low recruitment rate, to assess the importance of identity errors, structure and size of the pedigree on quantitative genetic estimates in our dataset. Our simulations revealed an important lack of precision in heritability and genetic-correlation estimates for most traits, a low power to detect significant effects and important identifiability problems. We also observed a large bias in heritability estimates when using the social pedigree instead of the genetic one (deflated heritabilities) or when not accounting for an important cause of resemblance among individuals (for example, permanent environment or brood effect) in model parameterizations for some traits (inflated heritabilities). We discuss the causes underlying the low reliability observed here and why they are also likely to occur in other study systems. Altogether, our results re-emphasize the difficulties of generalizing quantitative genetic estimates reliably from one study system to another and the importance of reporting simulation analyses to evaluate these important issues

Empirical dataset of the southern Quebec tree swallow population

Empirical dataset used to estimate and simulate quantitative genetic parameters. Column headings are individual ids (ID), year (YEAR), stade (STADE),brood ids (BROOD), sex (SEX), age (AGE), female age (AGEF), wing length (WL), Julian day for wing length measurement (WLJJ), body mass (MASS), brood number for body mass measurement (MASSNCOUV), Julian day for body mass measurement (MASSJJPONTE), hour for body mass measurement (MASSHOUR), tarsus length (TARSUS), laying date (LD), clutch size (CS), incubation duration (INC), nestling body mass (MASSJ16), nestling wing length (WLJ16), nestlong tarsus length (TARSEJ16), hour of measurement for nestling measurement (HOUR.J16), Julian day for nestling measurement (JJ.J16)

Effects of Rearing Environment and Strain Combination on Heterosis in Brook Trout

Three strains of brook trout Salvelinus fontinalis (domestic [D], Laval [L], and Rupert [R]) and their reciprocal hybrids were reared from 7 to 21 months of age in three different environments (indoor, constant temperature conditions; indoor, seasonal temperature variations; and outdoor, seasonal temperature variations) to test for the occurrence of heterosis in important life history traits of interest for production (body mass, length, condition factor, the absence of early sexual maturation, and survival). For each cross, body mass, length, and mortality were measured at regular intervals and sexual maturity was assessed in age‐1+ fish (21 months of age). We found evidence for heterosis in mass and length that varied according to strain, cross direction in reciprocal hybrids, developmental stage, or environment; no significant outbreeding depression was detected for these traits. Heterosis expression for weight varied from 4.9% to 23.8% depending on the hybrids and environments. We found that one out of five reciprocal hybrids tested (L[female]R[male]) expressed heterosis at each age stage throughout the experiment in the three environments while the other four had mixed results. No evidence for heterosis was observed for sexual maturity and survival. These results not only provide one of the first clear pieces of evidence for the occurrence of heterosis in salmonids but also illustrate the complex nature and the unpredictability of this phenomenon

Quantitative genetic analysis of the physiological stress response in three strains of brook charr Salvelinus fontinalis and their hybrids

Three strains [domestic (D), Laval (L) and Rupert (R)] of brook charr Salvelinus fontinalis and their reciprocal hybrids were submitted to transport stress to measure stress resistance. Primary (cortisol) and secondary (glucose, osmolality and haematocrit) stress responses were measured for each cross. Significant heritabilities were observed for both levels of stress response, with mean ±s.e. heritability (h2) = 0·60 ± 0·20 for plasma cortisol and 0·61 ± 0·20 for plasma glucose. There were strain differences whereby the R strain was the least sensitive to stress at the primary and secondary levels. No heterosis was detected, and only one case of outbreeding depression was present. The outbreeding depression was observed in the D♀R♂ hybrid, which had a 27% increase of plasma glucose compared to parental strains. The D♀R♂ and R♀L♂ hybrids had more pronounced variations (increase or decrease) in plasma osmolality than their respective parental strains, but these variations were difficult to relate definitively with the potential secondary stress response. These results indicate a strong potential for genetic improvement in the stress response to transport with the use of purebred crosses while hybridization has little value in this regard. -- Keywords : fish production ; Genetic improvement ; Heritability ; Heterosis ; Selection