Thermal Equilibrium Curves and Turbulent Mixing in Keplerian Accretion Disks

We consider vertical heat transport in Keplerian accretion disks, including the effects of radiation, convection, and turbulent mixing driven by the Balbus-Hawley instability, in astronomical systems ranging from dwarf novae (DNe), and soft X-ray transients (SXTs), to active galactic nuclei (AGN). We propose a modified, anisotropic form of mixing-length theory, which includes radiative and turbulent damping. We also include turbulent heat transport, which acts everywhere within disks, regardless of whether or not they are stably stratified, and can move entropy in either direction. We have generated a series of vertical structure models and thermal equilibrium curves using the scaling law for the viscosity parameter $\alpha$ suggested by the exponential decay of the X-ray luminosity in SXTs. We have also included equilibrium curves for DNe using an $\alpha$ which is constant down to a small magnetic Reynolds number ($\sim 10^4$). Our models indicate that weak convection is usually eliminated by turbulent radial mixing. The substitution of turbulent heat transport for convection is more important on the unstable branches of thermal equilibrium S-curves when $\alpha$ is larger. The low temperature turnover points $\Sigma_{max}$ on the equilibrium S-curves are significantly reduced by turbulent mixing in DNe and SXT disks. However, in AGN disks the standard mixing-length theory for convection is still a useful approximation when we use the scaling law for $\alpha$, since these disks are very thin at the relevant radii. In accordance with previous work, we find that constant $\alpha$ models give almost vertical S-curves in the $\Sigma-T$ plane and consequently imply very slow, possibly oscillating, cooling waves.Comment: 43 pages, 12 figures, 6 tables, to be published in Ap

Monte Carlo integration in Glauber model analysis of reactions of halo nuclei

Reaction and elastic differential cross sections are calculated for light nuclei in the framework of the Glauber theory. The optical phase-shift function is evaluated by Monte Carlo integration. This enables us to use the most accurate wave functions and calculate the phase-shift functions without approximation. Examples of proton nucleus (e.g. p-$^6$He, p-$^6$Li) and nucleus-nucleus (e.g. $^6$He$-^{12}$C) scatterings illustrate the effectiveness of the method. This approach gives us a possibility of a more stringent analysis of the high-energy reactions of halo nuclei.Comment: 20 pages, 8 figure

Phase diagram of the ferroelectric-relaxor (1-x)PbMg(1/3)Nb(2/3)O3-xPbTiO3

Synchrotron x-ray powder diffraction measurements have been performed on unpoled ceramic samples of (1-x)PbMg(1/3)Nb(2/3)O3-xPbTiO3 (PMN-xPT) with 30%<= x<= 39% as a function of temperature around the morphotropic phase boundary (MPB), which is the line separating the rhombohedral and tetragonal phases in the phase diagram. The experiments have revealed very interesting features previously unknown in this or related systems. The sharp and well-defined diffraction profiles observed at high and intermediate temperatures in the cubic and tetragonal phases, respectively, are in contrast to the broad features encountered at low temperatures. These peculiar characteristics, which are associated with the monoclinic phase of MC-type previously reported by Kiat et al and Singh et al., can only be interpreted as multiple coexisting structures with MC as the major component. An analysis of the diffraction profiles has allowed us to properly characterize the PMN-xPT phase diagram and to determine the stability region of the monoclinic phase, which extends from x= 31% to x= 37% at 20 K. The complex lansdcape of observed phases points to an energy balance between the different PMN-xPT phases which is intrinsically much more delicate than that of related systems such as PbZr(1-x)TixO3 or (1-x)PbZn(1/3)Nb(1/3)O3-xPbTiO3. These observations are in good accord with an optical study of x= 33% by Xu et al., who observed monoclinic domains with several different polar directions coexisting with rhombohedral domains, in the same single crystal.Comment: REVTeX4, 11 pages, 10 figures embedde

Cosmic evolution of low-excitation radio galaxies in the LOFAR two-metre sky survey deep fields

Galaxie

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of the most comprehensive maps of transcription start sites (TSSs) in several species. Strikingly, ~72% of them could not be assigned to a specific gene and initiate at unconventional regions, outside promoters or enhancers. Here, we probe these unassigned TSSs and show that, in all species studied, a significant fraction of CAGE peaks initiate at microsatellites, also called short tandem repeats (STRs). To confirm this transcription, we develop Cap Trap RNA-seq, a technology which combines cap trapping and long read MinION sequencing. We train sequence-based deep learning models able to predict CAGE signal at STRs with high accuracy. These models unveil the importance of STR surrounding sequences not only to distinguish STR classes, but also to predict the level of transcription initiation. Importantly, genetic variants linked to human diseases are preferentially found at STRs with high transcription initiation level, supporting the biological and clinical relevance of transcription initiation at STRs. Together, our results extend the repertoire of non-coding transcription associated with DNA tandem repeats and complexify STR polymorphism