Selected Hydrogeologic and Water-quality Data from Jones Beach Island, Long Island, New York

A data-collection site was instrumented on Jones Beach Island, a barrier island south of Long Island, N.Y., to study local freshwater/ saltwater relations in the shallow ground-water system. A geologic test boring revealed about 88 feet of well-sorted glacial outwash sand above about 15 feet of Gardiners Clay, which directly overlies silty sand of the Magothy Formation. Tidal effects on water levels in Great South Bay, the upper glacial aquifer, and the Magothy aquifer were observed and quantified with a tidal gage in the bay and analog water-level recorders in the wells.Chloride concentrations in the upper Magothy aquifer were higher than expected--about 270 mg/L (milligrams per liter), and those in the upper glacial aquifer were 17,000 to 19,000 mg/L, about the same as in Great South Bay. Estimates of pressure and freshwater equivalent heads indicate that, at the data-collection site, freshwater is discharging upward from the Magothy aquifer into the salty upper glacial aquifer, but dilution by this freshwater is undetectable. The reason for the elevated chloride concentration in the Magothy aquifer cannot be determined from available hydrogeologic information

3.10 Bumble bee semi-field studies: choice and management of colonies to reduce variability in assessment endpoints

The publication of the proposed EFSA risk assessment for pollinators resulted in an increasing demand for experiments with non-Apis pollinators (EFSA 2013). However, no official guideline for the standardized semifield trials exists so far. To overcome this lack of guidance, the development of semi-field study designs are under way. The methodology is concurrently be developed by an ICPPR working group (non-Apis working group).A major challenge in higher tier studies is the variability of the different endpoints. Hive development and particularly the production of young queens are very variable (Cabrera et al. 2016). With the current knowledge it seemed crucial to select appropriate colonies for the tests to reduce variability. The aim was to evaluate different strategies for the selection of bumble bee colonies and to improve the data quality with regard to the most important endpoints in bumble bee semi-field studies.The publication of the proposed EFSA risk assessment for pollinators resulted in an increasing demand for experiments with non-Apis pollinators (EFSA 2013). However, no official guideline for the standardized semifield trials exists so far. To overcome this lack of guidance, the development of semi-field study designs are under way. The methodology is concurrently be developed by an ICPPR working group (non-Apis working group).A major challenge in higher tier studies is the variability of the different endpoints. Hive development and particularly the production of young queens are very variable (Cabrera et al. 2016). With the current knowledge it seemed crucial to select appropriate colonies for the tests to reduce variability. The aim was to evaluate different strategies for the selection of bumble bee colonies and to improve the data quality with regard to the most important endpoints in bumble bee semi-field studies

Phase-dependent light propagation in atomic vapors

Light propagation in an atomic medium whose coupled electronic levels form a diamond-configuration exhibits a critical dependence on the input conditions. In particular, the relative phase of the input fields gives rise to interference phenomena in the electronic excitation whose interplay with relaxation processes determines the stationary state. We integrate numerically the Maxwell-Bloch equations and observe two metastable behaviors for the relative phase of the propagating fields corresponding to two possible interference phenomena. These phenomena are associated to separate types of response along propagation, minimize dissipation, and are due to atomic coherence. These behaviors could be studied in gases of isotopes of alkali-earth atoms with zero nuclear spin, and offer new perspectives in control techniques in quantum electronics.Comment: 16 pages, 11 figures, v2: typos corrected, v3: final version, to appear in Phys. Rev.

Frictional quantum decoherence

The dynamics associated with a measurement-based master equation for quantum Brownian motion are investigated. A scheme for obtaining time evolution from general initial conditions is derived. This is applied to analyze dissipation and decoherence in the evolution of both a Gaussian and a Schr\"{o}dinger cat initial state. Dependence on the diffusive terms present in the master equation is discussed with reference to both the coordinate and momentum representations.Comment: 18 pages, 7 figure

About direct Dark Matter detection in Next-to-Minimal Supersymmetric Standard Model

Direct dark matter detection is considered in the Next-to-Minimal Supersymmetric Standard Model (NMSSM). The effective neutralino-quark Lagrangian is obtained and event rates are calculated for the Ge-73 isotope. Accelerator and cosmological constraints on the NMSSM parameter space are included. By means of scanning the parameter space at the Fermi scale we show that the lightest neutralino could be detected in dark matter experiments with sizable event rate.Comment: latex, 12 pages, 2 ps-figures; extra LEP constraint is included, extra figure is added, recorrected version, resubmitted to Phys.Rev.

Targeted analysis of polymorphic loci from low-coverage shotgun sequence data allows accurate genotyping of HLA genes in historical human populations

The highly polymorphic human leukocyte antigen (HLA) plays a crucial role in adaptive immunity and is associated with various complex diseases. Accurate analysis of HLA genes using ancient DNA (aDNA) data is crucial for understanding their role in human adaptation to pathogens. Here, we describe the TARGT pipeline for targeted analysis of polymorphic loci from low-coverage shotgun sequence data. The pipeline was successfully applied to medieval aDNA samples and validated using both simulated aDNA and modern empirical sequence data from the 1000 Genomes Project. Thus the TARGT pipeline enables accurate analysis of HLA polymorphisms in historical (and modern) human populations

The Origins of Phase Transitions in Small Systems

The identification and classification of phases in small systems, e.g. nuclei, social and financial networks, clusters, and biological systems, where the traditional definitions of phase transitions are not applicable, is important to obtain a deeper understanding of the phenomena observed in such systems. Within a simple statistical model we investigate the validity and applicability of different classification schemes for phase transtions in small systems. We show that the whole complex temperature plane contains necessary information in order to give a distinct classification.Comment: 3 pages, 4 figures, revtex 4 beta 5, for further information see http://www.smallsystems.d

High permeability explains the vulnerability of the carbon store in drained tropical peatlands

Tropical peatlands are an important global carbon (C) store but are threatened by drainage for palm oil and wood pulp production. The store's stability depends on the dynamics of the peatland water table, which in turn depend on peat permeability. We found that an example of the most abundant type of tropical peatland—ombrotrophic domes—has an unexpectedly high permeability similar to that of gravel. Using computer simulations of a natural peat dome (NPD) and a ditch-drained peat dome (DPD) we explored how such high permeability affects water tables and peat decay. High permeability has little effect on NPD water tables because of low hydraulic gradients from the center to the margin of the peatland. In contrast, DPD water tables are consistently deep, leaving the upper meter of peat exposed to rapid decay. Our results reveal why ditch drainage precipitates a rapid destabilization of the tropical peatland C store

Anchoring of proteins to lactic acid bacteria

The anchoring of proteins to the cell surface of lactic acid bacteria (LAB) using genetic techniques is an exciting and emerging research area that holds great promise for a wide variety of biotechnological applications. This paper reviews five different types of anchoring domains that have been explored for their efficiency in attaching hybrid proteins to the cell membrane or cell wall of LAB. The most exploited anchoring regions are those with the LPXTG box that bind the proteins in a covalent way to the cell wall. In recent years, two new modes of cell wall protein anchoring have been studied and these may provide new approaches in surface display. The important progress that is being made with cell surface display of chimaeric proteins in the areas of vaccine development and enzyme- or whole-cell immobilisation is highlighted.