Recognizing a Something When Your Library Sees It

AbstractAdvances are needed in random-display technologies to more tightly link drug actions and functions to the genes that control physiological processes. The reports discussed here explore two sides of these issues—generating new library formats and identifying the targets of drug ligands

Metastable supersymmetry breaking and multitrace deformations of SQCD

Metastable vacua in supersymmetric QCD in the presence of single and multitrace deformations of the superpotential are explored, with the aim of obtaining an acceptable phenomenology. The metastable vacua appear at one loop, have a broken R-symmetry, and a magnetic gauge group that is completely Higgsed. With only a single trace deformation, the adjoint fermions from the meson superfield are approximately massless at one loop, even though they are massive at tree level and R-symmetry is broken. Consequently, if charged under the standard model, they are unacceptably light. A multitrace quadratic deformation generates fermion masses proportional to the deformation parameter. Phenomenologically viable models of direct gauge mediation can then be obtained, and some of their features are discussed.Comment: 33 pages, 3 figures. Added references and a commen

Generating function for K-restricted jagged partitions

We present a natural extension of Andrews' multiple sums counting partitions of the form (λ1,⋯,λm) with λi≥λi+k−1+2. The multiple sum that we construct is the generating function for the so-called K-restricted jagged partitions. A jagged partition is a sequence of non-negative integers (n1,n2,⋯,nm) with nm≥1 subject to the weakly decreasing conditions ni≥ni+1−1 and ni≥ni+2. The K-restriction refers to the following additional conditions: ni≥ni+K−1+1 or ni=ni+1−1=ni+K−2+1=ni+K−1. The corresponding generalization of the Rogers-Ramunjan identities is displayed, together with a novel combinatorial interpretation

Inland surface waters in protected areas globally:Current coverage and 30-year trends

Inland waters are unique ecosystems offering services and habitat resources upon which many species depend. Despite the importance of, and threats to, inland water, global assessments of protected area (PA) coverage and trends have focused on land habitats or have assessed land and inland waters together. We here provide the first assessment of the level of protection of inland open surface waters and their trends (1984–2015) within PAs for all countries, using a globally consistent, high-resolution (30 m) and validated dataset on permanent and seasonal surface waters based on Landsat images. Globally, 15% of inland surface waters are covered by PAs with mapped boundaries. Estimated inland water protection increases to 16.4% if PAs with reported area but delineated only as points are included as circular buffers. These coverage estimates slightly exceed the comparable figure for land but fall below the 17% goal of the Convention on Biological Diversity’s Aichi Target 11 for 2020. Protection levels are very uneven across countries, half of which do not yet meet the 17% target. The lowest coverage of surface water by PAs (<5%) was found in Africa and in parts of Asia. There was a global trend of permanent water losses and seasonal water gains within PAs, concomitant with an increase of both water types outside PAs. In 38% of countries, PAs lost over 5% of permanent water. Global protection targets for inland waters may well be met by 2020, but much stronger efforts are required to ensure their effective conservation, which will depend not only on sound PA governance and management but also on the sustainable use of water resources outside PAs. Given the pressures on water in a rapidly changing world, integrated management planning of water resources involving multiple sectors and entire basins is therefore necessary

Ancient origin of somatic and visceral neurons

Background: A key to understanding the evolution of the nervous system on a large phylogenetic scale is the identification of homologous neuronal types. Here, we focus this search on the sensory and motor neurons of bilaterians, exploiting their well-defined molecular signatures in vertebrates. Sensorimotor circuits in vertebrates are of two types: somatic (that sense the environment and respond by shaping bodily motions) and visceral (that sense the interior milieu and respond by regulating vital functions). These circuits differ by a small set of largely dedicated transcriptional determinants: Brn3 is expressed in many somatic sensory neurons, first and second order (among which mechanoreceptors are uniquely marked by the Brn3+/Islet1+/Drgx+ signature), somatic motoneurons uniquely co-express Lhx3/4 and Mnx1, while the vast majority of neurons, sensory and motor, involved in respiration, blood circulation or digestion are molecularly defined by their expression and dependence on the pan-visceral determinant Phox2b. Results: We explore the status of the sensorimotor transcriptional code of vertebrates in mollusks, a lophotrochozoa clade that provides a rich repertoire of physiologically identified neurons. In the gastropods Lymnaea stagnalis and Aplysia californica, we show that homologues of Brn3, Drgx, Islet1, Mnx1, Lhx3/4 and Phox2b differentially mark neurons with mechanoreceptive, locomotory and cardiorespiratory functions. Moreover, in the cephalopod Sepia officinalis, we show that Phox2 marks the stellate ganglion (in line with the respiratory — that is, visceral— ancestral role of the mantle, its target organ), while the anterior pedal ganglion, which controls the prehensile and locomotory arms, expresses Mnx. Conclusions: Despite considerable divergence in overall neural architecture, a molecular underpinning for the functional allocation of neurons to interactions with the environment or to homeostasis was inherited from the urbilaterian ancestor by contemporary protostomes and deuterostomes

Using X-Ray Polarimetry to Probe the Physics of Black Holes and Neutron Stars

This white paper highlights compact object and fundamental physics science opportunities afforded by high-throughput broadband (0.1-60 keV) X-ray polarization observations. The polarimetric observations can reveal the inner workings of high-energy sources, and allow us to test physical laws in the extreme conditions close to compact objects

The ERK Mitogen-Activated Protein Kinase Pathway Contributes to Ebola Virus Glycoprotein-Induced Cytotoxicity

Ebola virus is a highly lethal pathogen that causes hemorrhagic fever in humans and nonhuman primates. Among the seven known viral gene products, the envelope glycoprotein (GP) alone induces cell rounding and detachment that ultimately leads to cell death. Cellular cytoxicity is not seen with comparable levels of expression of a mutant form of GP lacking a mucin-like domain (GPΔmuc). GP-induced cell death is nonapoptotic and is preceded by downmodulation of cell surface molecules involved in signaling pathways, including certain integrins and epidermal growth factor receptor. To investigate the mechanism of GP-induced cellular toxicity, we analyzed the activation of several signal transduction pathways involved in cell growth and survival. The active form of extracellular signal-regulated kinases types 1 and 2 (ERK1/2), phospho-ERK1/2, was reduced in cells expressing GP compared to those expressing GPΔmuc as determined by flow cytometry, in contrast to the case for several other signaling proteins. Subsequent analysis of the activation states and kinase activities of related kinases revealed a more pronounced effect on the ERK2 kinase isoform. Disruption of ERK2 activity by a dominant negative ERK or by small interfering RNA-mediated ERK2 knockdown potentiated the decrease in αV integrin expression associated with toxicity. Conversely, activation of the pathway through the expression of a constitutively active form of ERK2 significantly protected against this effect. These results indicate that the ERK signaling cascade mediates GP-mediated cytotoxicity and plays a role in pathogenicity induced by this gene product

The Salem simulator version 2.0: a tool for predicting the productivity of pure and mixed forest stands and simulating management operations

International audienceA growing body of research suggests mixed-species stands are generally more productive than pure stands as well as less sensitive to disturbances. However, these effects of mixture depend on species assemblages and environmental conditions. Here, we present the Salem simulator, a tool that can help forest managers assess the potential benefit of shifting from pure to mixed stands from a productivity perspective. Salem predicts the dynamics of pure and mixed even-aged stands and makes it possible to simulate management operations. Its purpose is to be a decision support tool for forest managers and stakeholders as well as for policy makers. It is also designed to conduct virtual experiments and help answer research questions. In Salem, we parameterised the growth in pure stand of 12 common tree species of Europe and we assessed the effect of mixture on species growth for 24 species pairs (made up of the 12 species mentioned above). Thus, Salem makes it possible to compare the productivity of 36 different pure and mixed stands depending on environmental conditions and user-defined management strategies. Salem is essentially based on the analysis of National Forest Inventory data. A major outcome of this analysis is that we found species mixture most often increases species growth, in particular at the poorest sites. Independently from the simulator, foresters and researchers can also consider using the species-specific models that constitute Salem: the growth models including or excluding mixture effect, the bark models, the diameter distribution models, the circumference-height relationship models, as well as the volume equations for the 12 parameterised species. Salem runs on Windows, Linux, or Mac. Its user-friendly graphical user interface makes it easy to use for non-modellers. Finally, it is distributed under a LGPL license and is therefore free and open source