A preliminary investigation of the spotted owl in Oregon

Between 1970 and 1974, data were collected on the distribution and biology of the spotted owl (Strix occidentalis) in Oregon. One-hundred and sixteen pairs and seven single birds were located. Spotted owls occurred throughout the mountains of western Oregon and on the east slope of the Cascade Range at least as far east as Badger Butte, Hood River County; Abbot Butte, Jefferson County; and Swan Lake Point, Klamath County. The upper elevational limits of the species increased from about 1,350 meters in northern Oregon to 1,770 meters in southern Oregon. Although spotted owls were not uncommon in some areas, evidence indicated that the population was declining as a result of habitat loss. A total of 2,647 prey items were identified from 42 pairs of owls. Prey species included 29 mammals, 20 birds, 2 reptiles, a crayfish, a terrestrial snail, and 26 genera of insects. Mammalian prey comprised over 90 percent of the biomass consumed. The flying squirrel (Glaucomys sabrinus) was the principal prey species (13-48 percent of total biomass consumed), except in dry forest areas, where wood rats (Neotoma fuscipes and N. cinerea) became most important (7-78 percent of total biomass). Other important prey included snowshoe hares (Lepus americanus), red tree voles (Phenacomys longicaudus), deer mice (Peromyscus maniculatus), western red-backed voles (Clethrionomys occidentalis), Mazama pocket gophers (Thomomys mazama), pikas (Ochotona princeps), and small birds. Predation on showshoe hares, gophers, moles, and insects was heaviest during the late spring and summer months. Spotted owls foraged primarily at night, and often captured arboreal animals (squirrels, wood rats, and tree voles) by grabbing them from limbs or tree trunks. Eighteen spotted owl nests were located, including 13 in cavities in living old-growth conifers, three in clumps of deformed limbs caused by dwarfmistletoes (Arceuthobium spp. ), and two in platform nests constructed by other species. Nest height above ground ranged from 19. 8-55.2 meters. Owls added no materials to their nests except small amounts of molted down. The mean date of clutch initiation for 15 nests was 29 March (range 9 March - 19 April). As egg-laying neared, adult activities (vocalization, copulation, courtship feeding, roosting) became increasingly centered around nest trees, and several days before they laid eggs, females began to roost inside their nest cavities. Incubation, which lasted approximately 30 days, was performed entirely by females. Males fed females during this period. Owlets fledged at 34-36 days of age (between early May and mid -June), and were fed by their parents until late September. At fledging, owlets were weak fliers, and often fell from their nests to the ground. When this occurred, they regained safe perches in trees or low bushes by climbing. Forty-eight nesting attempts were observed (38 successful). Total number of young fledged was 63. Mean number of young fledged per successful nest was 1.61 (range 1-3). The percentage of pairs attempting to nest ranged from 89 percent in 1972, to 16 percent in 1973, and 46 percent in 1974. I suspected, but did not verify, that the low numbers of breeding pairs in some years reflected a decline in prey numbers. Percent of nesting pairs which fledged young was 92 in 1972, 40 in 1973, and 72 in 1974. A principal cause of nest failure in all years was nest desertion during early stages of nesting. In 1972, juvenile mortality between fledging and the end of August was 35 percent. Predation was suspected as the principal cause of mortality, but several young were killed when the fell from nests, and two young died in their nest. Most broods did not move far from their nests until they began dispersal in September or October. Of 14 broods checked in late August, 5 were within 160 meters of their nests, 5 were 170-250 meters from their nests, and 2 had moved 487 and 670 meters, respectively. Two broods could not be relocated, but had moved 1, 050 and 365 meters, respectively, when last seen in July. Owlets underwent two molts during their first summer; the white natal down was replaced by the downy mesoptile plumage before owlets fledged. Replacement of the mesoptile plumage by the first winter plumage then occurred over a 4-month period and was complete by the end of September or early October. In the latter plumage owlets were nearly indistinguishable from adults. Of 123 sites where spotted owls were located, 117 (95 percent) where characterized by unharvested old-growth conifer forests. Two pairs occupied old-growth forests which had been partially logged about 30 years previous, and three occupied second-growth forests which contained minor old -growth components. The multilayered structure of old-growth stands provided owls with large trees for nests and winter roosts, small shaded summer roost trees, and a closed canopy (canopy closure ranged from 53-86 percent at nest sites). Owls occurred in most coniferous associations found in western Oregon and the Cascades, with the exception of subalpine forests, open ponderosa pine (Pinus ponderosa) forests and lodgepole pine (Pinus contorta) forests. Owls showed a slight preference (X2 = P < . 01) for nests located on north or east exposures, possibly because trees there were usually larger and forests were denser than on south or west exposures. Fifteen of 18 nests were within 400 meters of permanent water (range = 15-1,417 meters). Sources of water utilized by all 18 pairs consisted of small perennial streams or springs. Timber harvest occurred or was scheduled in 52 percent of the owl habitats located during the study. In most cases, timber harvest within an occupied habitat did not drive the owls completely out of the area, because only small portions of extensive forest areas were harvested. When portions of small forest areas (less than about 80 hectares) were harvested, however, owls often disappeared from these areas. Two pairs located in old-growth forests which had been subjected to very light over story removal indicated that, under some circumstances, owls could tolerate this type of harvest activity. Clear-cut harvest, however, eliminated roosting, nesting and most foraging in the affected areas

Population trends in northern spotted owls: Associations with climate in the Pacific Northwest

We used reverse time capture-mark-recapture models to describe associations between rate of population change (λ) and climate for northern spotted owls (Strix occidentalis caurina) at six long-term study areas in Washington and Oregon, USA. Populations in three of six areas showed strong evidence of declining populations, while populations in two additional areas were likely declining as well. At four areas, λ was positively associated with wetter-than-normal conditions during the growing season, which likely affects prey availability. Lambda was also negatively associated with cold, wet winters and nesting seasons, and the number of hot summer days. The amount of annual variation in λ accounted for by climate varied across study areas (3–85%). Rate of population change was more sensitive to adult survival than to recruitment; however, there was considerable variation among years and across study areas for all demographic rates. While annual survival was more closely related to regional climate conditions, recruitment was often associated with local weather. In addition to climate, declines in recruitment at four of six areas were associated with increased presence of barred owls. Climate change models predict warmer, wetter winters and hotter, drier summers for the Pacific Northwest in the first half of the 21st century. Our results indicate that these conditions have the potential to negatively affect annual survival, recruitment, and consequently population growth rates for northern spotted owls

Terpenoid Resin Distribution in Conifer Needles with Implications for Red Tree Vole, Arborimus longicaudus, Foraging

Tree voles are dietary specialists, feeding almost exclusively on conifer needles and bark. They reduce their exposure to conifer chemical defenses by physically removing resin ducts from many needles before ingesting the remaining tissue. The portion of needle removed differs among tree species, depending on the location of the resin ducts. To evaluate the amount of resin avoided by this behavior we removed the resin ducts from Douglas-fir, Western Hemlock, and Sitka Spruce needles and used gas chromatography to compare volatile resin concentrations in needles with and without the resin ducts removed. Needle tissues without resin ducts contained no terpenoid resin, demonstrating that tree voles can regulate the nutritional quality of their diet by controlling the amount of resin ingested. We suggest that differences in the physical structure (and possibly chemical composition of terpenes) of the needles make it difficult for voles to easily switch between tree hosts

Population trends in northern spotted owls: Associations with climate in the Pacific Northwest

We used reverse time capture-mark-recapture models to describe associations between rate of population change (λ) and climate for northern spotted owls (Strix occidentalis caurina) at six long-term study areas in Washington and Oregon, USA. Populations in three of six areas showed strong evidence of declining populations, while populations in two additional areas were likely declining as well. At four areas, λ was positively associated with wetter-than-normal conditions during the growing season, which likely affects prey availability. Lambda was also negatively associated with cold, wet winters and nesting seasons, and the number of hot summer days. The amount of annual variation in λ accounted for by climate varied across study areas (3–85%). Rate of population change was more sensitive to adult survival than to recruitment; however, there was considerable variation among years and across study areas for all demographic rates. While annual survival was more closely related to regional climate conditions, recruitment was often associated with local weather. In addition to climate, declines in recruitment at four of six areas were associated with increased presence of barred owls. Climate change models predict warmer, wetter winters and hotter, drier summers for the Pacific Northwest in the first half of the 21st century. Our results indicate that these conditions have the potential to negatively affect annual survival, recruitment, and consequently population growth rates for northern spotted owls.This is the author's final (post-refereeing) manuscript. Article appears in Biological Conservation (www.elsevier.com/ locate/biocon) and is copyrighted by Elsevier

Roosting Habitat Use and Selection By Northern Spotted Owls During Natal Dispersal

We studied habitat selection by northern spotted owls (Strix occidentalis caurina) during natal dispersal in Washington State, USA, at both the roost site and landscape scales. We used logistic regression to obtain parameters for an exponential resource selection function based on vegetation attributes in roost and random plots in 76 forest stands that were used for roosting. We used a similar analysis to evaluate selection of landscape habitat attributes based on 301 radio-telemetry relocations and random points within our study area. We found no evidence of within-stand selection for any of the variables examined, but 78% of roosts were in stands with at least some large (>50 cm dbh) trees. At the landscape scale, owls selected for stands with high canopy cover (>70%). Dispersing owls selected vegetation types that were more similar to habitat selected by adult owls than habitat that would result from following guidelines previously proposed to maintain dispersal habitat. Our analysis indicates that juvenile owls select stands for roosting that have greater canopy cover than is recommended in current agency guidelines.Keywords: Dispersal habitat, Radio-telemetry, Washington, Logistic regression, Northern spotted owl, Strix occidentalis caurin

Variation in inbreeding rates across the range of Northern Spotted Owls (\u3ci\u3eStrix occidentalis caurina\u3c/i\u3e): Insights from over 30 years of monitoring data

Inbreeding has been difficult to quantify in wild populations because of incomplete parentage information. We applied and extended a recently developed framework for addressing this problem to infer inbreeding rates in Northern Spotted Owls (Strix occidentalis caurina) across the Pacific Northwest, USA. Using pedigrees from 14,187 Northern Spotted Owls, we inferred inbreeding rates for 14 types of matings among relatives that produce pedigree inbreeding coefficients of F=0.25 or F=0.125. Inbreeding was most common in the Washington Cascades, where an estimated 15% of individuals are inbred. Inbreeding was lowest in western Oregon (3.5%) and northern California (2.7%), and intermediate for the Olympic Peninsula of Washington (6.1%). Estimates from the Olympic Peninsula were likely underestimates because of small sample sizes and the presence of few pedigrees capable of resolving inbreeding events. Most inbreeding resulted from matings between full siblings or half siblings, although a high rate of inbreeding from mother–son pairs was identified in the Olympic Peninsula. Geographic variation in inbreeding rates may reflect population declines and bottlenecks that have been detected in prior investigations. We show that there is strong selection against inbred birds. Only 3 of 44 inbred birds were later identified as parents (6.8%), whereas 2,823 of 10,380 birds that represented a comparable cross section of the data were later seen as reproducing parents (27.2%). Habitat loss and competition with Barred Owls (S. varia) remain primary threats to Northern Spotted Owls. However, given the negative consequences of inbreeding, Spotted Owl populations in Washington with suitable habitat and manageable numbers of Barred Owls may benefit from translocations of individuals from Oregon and California to introduce new genetic variation and reduce future inbreeding events. La endogamia ha sido dif´ıcil de cuantificar en las poblaciones silvestres debido a la falta de informaci ´on sobre los parentescos. Aplicamos y extendimos un marco conceptual recientemente desarrollado para encarar el problema de inferir las tasas de endogamia en Strix occidentalis caurina a trav´es del noroeste del Pac´ıfico, EEUU. Usando los pedigr´ıes provenientes de 14187 individuos, inferimos las tasas de endogamia para 14 tipos de apareamiento entre parientes que producen coeficientes de endogamia de pedigr´ı de F=0.25 o F=0.125. La endogamia fue ma´s com´un en las Cascadas de Washington, donde se estima que 15% de los individuos son endoga´micos. La endogamia fue menor en el oeste de Oreg´on (3.5%) y el norte de California (2.7%), e intermedia en la Pen´ınsula Ol´ımpica de Washington (6.1%). Las estimaciones de la Pen´ınsula Ol´ımpica fueron probablemente subestimadas debido a los peque ˜nos tama ˜nos de muestreo y a la presencia de pocos pedigr´ıes capaces de resolver los eventos de endogamia. La mayor´ıa de la endogamia result ´o de los apareamientos entre hermanos completos o medios hermanos, aunque se identific ´o una alta tasa de endogamia en parejas madre/hijo en la Pen´ınsula Ol´ımpica. La variaci ´on geogra´ fica en las tasas de endogamia puede reflejar disminuciones poblacionales y cuellos de botella que han sido detectados en investigaciones previas. Mostramos que hay una fuerte selecci ´on contra las aves endoga´micas. Solo tres de 44 aves endoga´micas fueron ma´s tarde identificadas como progenitores (6.8%), mientras que 2823 de 10380 aves que representaron una secci ´on transversal comparable de datos fueron vistas ma´s tarde como progenitores reproductivos (27.2%). La p´erdida de ha´bitat y la competencia con Strix varia sigue siendo la principal amenaza para S. o. caurina. Sin embargo, dadas las consecuencias negativas de la endogamia, las poblaciones de S. occidentalis en Washington con ha´bitat adecuado y n´umeros manejables de Strix varia pueden beneficiarse de traslocaciones de individuos de Oreg´on y California para introducir nueva variaci ´on gen´etica y reducir futuros eventos de endogamia

The past and future roles of competition and habitat in the range-wide occupancy dynamics of Northern Spotted Owls

Slow ecological processes challenge conservation. Short-term variability can obscure the importance of slower processes that may ultimately determine the state of a system. Furthermore, management actions with slow responses can be hard to justify. One response to slow processes is to explicitly concentrate analysis on state dynamics. Here, we focus on identifying drivers of Northern Spotted Owl (Strix occidentalis caurina) territorial occupancy dynamics across 11 study areas spanning their geographic range and forecasting response to potential management actions. Competition with Barred Owls (Strix varia) has increased Spotted Owl territory extinction probabilities across all study areas and driven recent declines in Spotted Owl populations. Without management intervention, the Northern Spotted Owl subspecies will be extirpated from parts of its current range within decades. In the short term, Barred Owl removal can be effective. Over longer time spans, however, maintaining or improving habitat conditions can help promote the persistence of northern spotted owl populations. In most study areas, habitat effects on expected Northern Spotted Owl territorial occupancy are actually greater than the effects of competition from Barred Owls. This study suggests how intensive management actions (removal of a competitor) with rapid results can complement a slower management action (i.e., promoting forest succession)

Range-wide sources of variation in reproductive rates of northern spotted owls

We conducted a range-wide investigation of the dynamics of site-level reproductive rate of northern spotted owls using survey data from 11 study areas across the subspecies geographic range collected during 1993–2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed further insights into northern spotted owl population ecology and dynamics. Both nondetection and state misclassification were important, especially because factors affecting these sources of error also affected focal ecological parameters. Annual probabilities of site occupancy were greatest at sites with successful reproduction in the previous year and lowest for sites not occupied by a pair in the previous year. Site-specific occupancy transition probabilities declined over time and were negatively affected by barred owl presence. Overall, the site-specific probability of successful reproduction showed substantial year-to-year fluctuations and was similar for occupied sites that did or did not experience successful reproduction the previous year. Site-specific probabilities for successful reproduction were very small for sites that were unoccupied the previous year. Barred owl presence negatively affected the probability of successful reproduction by northern spotted owls in Washington and California, as predicted, but the effect in Oregon was mixed. The proportions of sites occupied by northern spotted owl pairs showed steep, near-monotonic declines over the study period, with all study areas showing the lowest observed levels of occupancy to date. If trends continue it is likely that northern spotted owls will become extirpated throughout large portions of their range in the coming decades

Llama-Derived Single Domain Antibodies to Build Multivalent, Superpotent and Broadened Neutralizing Anti-Viral Molecules

For efficient prevention of viral infections and cross protection, simultaneous targeting of multiple viral epitopes is a powerful strategy. Llama heavy chain antibody fragments (VHH) against the trimeric envelope proteins of Respiratory Syncytial Virus (Fusion protein), Rabies virus (Glycoprotein) and H5N1 Influenza (Hemagglutinin 5) were selected from llama derived immune libraries by phage display. Neutralizing VHH recognizing different epitopes in the receptor binding sites on the spikes with affinities in the low nanomolar range were identified for all the three viruses by viral neutralization assays. By fusion of VHH with variable linker lengths, multimeric constructs were made that improved neutralization potencies up to 4,000-fold for RSV, 1,500-fold for Rabies virus and 75-fold for Influenza H5N1. The potencies of the VHH constructs were similar or better than best performing monoclonal antibodies. The cross protection capacity against different viral strains was also improved for all three viruses, both by multivalent (two or three identical VHH) and biparatopic (two different VHH) constructs. By combining a VHH neutralizing RSV subtype A, but not subtype B with a poorly neutralizing VHH with high affinity for subtype B, a biparatopic construct was made with low nanomolar neutralizing potency against both subtypes. Trivalent anti-H5N1 VHH neutralized both Influenza H5N1 clade1 and 2 in a pseudotype assay and was very potent in neutralizing the NIBRG-14 Influenza H5N1 strain with IC50 of 9 picomolar. Bivalent and biparatopic constructs against Rabies virus cross neutralized both 10 different Genotype 1 strains and Genotype 5. The results show that multimerization of VHH fragments targeting multiple epitopes on a viral trimeric spike protein is a powerful tool for anti-viral therapy to achieve "best-in-class" and broader neutralization capacity

Type 1 Fimbriae, a Colonization Factor of Uropathogenic Escherichia coli, Are Controlled by the Metabolic Sensor CRP-cAMP

Type 1 fimbriae are a crucial factor for the virulence of uropathogenic Escherichia coli during the first steps of infection by mediating adhesion to epithelial cells. They are also required for the consequent colonization of the tissues and for invasion of the uroepithelium. Here, we studied the role of the specialized signal transduction system CRP-cAMP in the regulation of type 1 fimbriation. Although initially discovered by regulating carbohydrate metabolism, the CRP-cAMP complex controls a major regulatory network in Gram-negative bacteria, including a broad subset of genes spread into different functional categories of the cell. Our results indicate that CRP-cAMP plays a dual role in type 1 fimbriation, affecting both the phase variation process and fimA promoter activity, with an overall repressive outcome on fimbriation. The dissection of the regulatory pathway let us conclude that CRP-cAMP negatively affects FimB-mediated recombination by an indirect mechanism that requires DNA gyrase activity. Moreover, the underlying studies revealed that CRP-cAMP controls the expression of another global regulator in Gram-negative bacteria, the leucine-responsive protein Lrp. CRP-cAMP-mediated repression is limiting the switch from the non-fimbriated to the fimbriated state. Consistently, a drop in the intracellular concentration of cAMP due to altered physiological conditions (e.g. growth in presence of glucose) increases the percentage of fimbriated cells in the bacterial population. We also provide evidence that the repression of type 1 fimbriae by CRP-cAMP occurs during fast growth conditions (logarithmic phase) and is alleviated during slow growth (stationary phase), which is consistent with an involvement of type 1 fimbriae in the adaptation to stress conditions by promoting biofilm growth or entry into host cells. Our work suggests that the metabolic sensor CRP-cAMP plays a role in coupling the expression of type 1 fimbriae to environmental conditions, thereby also affecting subsequent attachment and colonization of host tissues