Using aircraft measurements to determine the refractive index of Saharan dust during the DODO Experiments

Much uncertainty in the value of the imaginary part of the refractive index of mineral dust contributes to uncertainty in the radiative effect of mineral dust in the atmosphere. A synthesis of optical, chemical and physical in-situ aircraft measurements from the DODO experiments during February and August 2006 are used to calculate the refractive index mineral dust encountered over West Africa. Radiative transfer modeling and measurements of broadband shortwave irradiance at a range of altitudes are used to test and validate these calculations for a specific dust event on 23 August 2006 over Mauritania. Two techniques are used to determine the refractive index: firstly a method combining measurements of scattering, absorption, size distributions and Mie code simulations, and secondly a method using composition measured on filter samples to apportion the content of internally mixed quartz, calcite and iron oxide-clay aggregates, where the iron oxide is represented by either hematite or goethite and clay by either illite or kaolinite. The imaginary part of the refractive index at 550 nm (ni550) is found to range between 0.0001 i to 0.0046 i, and where filter samples are available, agreement between methods is found depending on mineral combination assumed. The refractive indices are also found to agree well with AERONET data where comparisons are possible. ni550 is found to vary with dust source, which is investigated with the NAME model for each case. The relationship between both size distribution and ni550 on the accumulation mode single scattering albedo at 550 nm (ω0550) are examined and size distribution is found to have no correlation to ω0550, while ni550 shows a strong linear relationship with ω0550. Radiative transfer modeling was performed with different models (Mie-derived refractive indices, but also filter sampling composition assuming both internal and external mixing). Our calculations indicate that Mie-derived values of ni550 and the externally mixed dust where the iron oxide-clay aggregate corresponds to the goethite-kaolinite combination result in the best agreement with irradiance measurements. The radiative effect of the dust is found to be very sensitive to the mineral combination (and hence refractive index) assumed, and to whether the dust is assumed to be internally or externally mixed

Chemical characterisation of iron in dust and biomass burning aerosols during AMMA-SOP0/DABEX: implication for iron solubility

The chemical composition and the soluble fraction were determined in aerosol samples collected during flights of AMMA-SOP0/DABEX campaign, which were conducted in the West African Sahel during dry season (2006). Two aerosol types are encountered in this period: dust particles (DUST) and biomass burning aerosol (BB). Chemical analysis and microscope observations showed that the iron (Fe) found in BB samples mainly originates from dust particles mostly internally mixed in the biomass burning layer. Chemical analyses of samples showed that the Fe solubility is lower in African dust samples than in biomass burning aerosols. Our data provide a first idea of the variability of iron dust solubility in the source region (0.1% and 3.4%). We found a relationship between iron solubility/clay content/source which partly confirms that the variability of iron solubility in this source region is related to the character and origin of the aerosols themselves. In the biomass burning samples, no relationship were found between Fe solubility and either the concentrations of acidic species (SO<sub>4</sub><sup>2−</sup>, NO<sub>3</sub><sup>−</sup> or oxalate) or the content of carbon (TC, OC, BC). Therefore, we were unable to determine what processes are involved in this increase of iron solubility. In terms of supply of soluble Fe to oceanic ecosystems on a global scale, the higher solubility observed for Fe in biomass burning could imply an indirect source of Fe to marine ecosystems. But these aerosols are probably not significant because the Sahara is easily the dominant source of Fe to the Atlantic Ocean

Atmospheric aerosols at the Pierre Auger Observatory and environmental implications

The Pierre Auger Observatory detects the highest energy cosmic rays. Calorimetric measurements of extensive air showers induced by cosmic rays are performed with a fluorescence detector. Thus, one of the main challenges is the atmospheric monitoring, especially for aerosols in suspension in the atmosphere. Several methods are described which have been developed to measure the aerosol optical depth profile and aerosol phase function, using lasers and other light sources as recorded by the fluorescence detector. The origin of atmospheric aerosols traveling through the Auger site is also presented, highlighting the effect of surrounding areas to atmospheric properties. In the aim to extend the Pierre Auger Observatory to an atmospheric research platform, a discussion about a collaborative project is presented.Comment: Regular Article, 16 pages, 12 figure

Toxoplasma gondii infection in alpine red deer (Cervus elaphus): Its spread and effects on fertility

In contrast to the depth of knowledge on the pathological effects of parasitism in domestic animals, the impact of the vast majority of parasites on wildlife hosts is poorly understood and, besides, information from domestics is rarely usable to disclose the parasites' impact on free-ranging populations' dynamics. Here we use Toxoplasmosis as a study model since, until now, the infection process and the protozoan's effects in natural conditions has received little attention. We analysed 81 sera from red deer (Cervus elaphus) sampled in Italian Alps and through generalized linear models we evaluated (1) the epidemiological factors influencing T. gondii infection dynamics; (2) its impact on female fertility [corrected]. High seroprevalence of T. gondii infection was recorded in yearling (1 year-old; prevalence = 52.4%) and adult (>2 year-old; prevalence = 51.3%) red deer, while calves (<1 year-old) did not contract the infection suggesting horizontal transmission as the main route of infection. The stable prevalence between yearlings and adults and the higher serological titres of younger individuals lead to two alternative infection processes suggesting a difference between age classes or in acquiring the infection or in responding to the pathogen. No associations between T. gondii serological titres and pregnancy status was observed indicating no direct effect on the probability of being pregnant; nevertheless a relation between females' higher serological titres and lower foetal development emerged, suggesting potential effects of the parasite infection on deer reproduction. The results demonstrate high seroprevalence of T. gondii infection in free-ranging red deer and, furthermore, the effect on foetal development suggests the potential impact of the parasite on red deer fertility and thus on its population dynamics

On the Parity Problem in One-Dimensional Cellular Automata

We consider the parity problem in one-dimensional, binary, circular cellular automata: if the initial configuration contains an odd number of 1s, the lattice should converge to all 1s; otherwise, it should converge to all 0s. It is easy to see that the problem is ill-defined for even-sized lattices (which, by definition, would never be able to converge to 1). We then consider only odd lattices. We are interested in determining the minimal neighbourhood that allows the problem to be solvable for any initial configuration. On the one hand, we show that radius 2 is not sufficient, proving that there exists no radius 2 rule that can possibly solve the parity problem from arbitrary initial configurations. On the other hand, we design a radius 4 rule that converges correctly for any initial configuration and we formally prove its correctness. Whether or not there exists a radius 3 rule that solves the parity problem remains an open problem.Comment: In Proceedings AUTOMATA&JAC 2012, arXiv:1208.249

How surface properties influence mineral dust emissions in the Sahelian region ? A modelling case study during AMMA

Tropical mesoscale convective systems (MCSs) are a prominent feature of the African meteorology. A continuous monitoring of the aeolian activity in an experimental site located in Niger shows that such events are responsible for the major part of the annual local wind erosion, i.e. for most of the Sahelian dust emissions [Rajot, 2001]. However, the net effect of these MCSs on mineral dust budget has to be estimated: on the one hand, these systems produce extremely high surface wind velocities leading to intense dust uptake, but on the other hand, rainfalls associated with these systems can efficiently remove the emitted dust from the atmosphere. High resolution modelling appears as a relevant approach to correctly reproduce the surface meteorology associated with such meteorological systems [Bouet et al., submitted]. The question now arising concerns the reliability of surface characteristics available for the Sahelian region, especially soil texture and surface roughness, which are critical parameters for dust emissions. Contrary to arid regions, which are now well documented, data is still missing to correctly characterize semi-arid regions like the Sahel. This is in particular due to the well pronounced annual cycles of precipitations and vegetation in these regions and to the impact of land-use on surface properties. This study focuses on a case study of dust emission associated with the passage of a MCS observed during one of the Special Observing Periods of the international African Monsoon Multidisciplinary Analysis (AMMA – SOPs 1-2) program. The simulations were made using the Regional Atmospheric Modeling System (RAMS, Cotton et al. [2003]) coupled online with the dust production model developed by Marticorena and Bergametti [1995] and recently improved by Laurent et al. [2008] for Africa. The sensitivity of dust emission associated with the passage of the MCS to surface features is investigated using different data sets of surface properties (Harmonized World Soil Database, HWSD) and land-use (GLOBCOVER). In-situ measurements of dust concentrations (both ground-based and airborne), and of dust emission flux are used to validate the simulations

Radiative heating rates profiles associated with a springtime case of Bodélé and Sudan dust transport over West Africa

International audienceThe radiative heating rate due to mineral dust over West Africa is investigated using the radiative code STREAMER, as well as remote sensing and in situ observations gathered during the African Monsoon Multidisciplinary Analysis Special Observing Period (AMMA SOP). We focus on two days (13 and 14 June 2006) of an intense and long lasting episode of dust being lifted in remote sources in Chad and Sudan and transported across West Africa in the African easterly jet region, during which airborne operations were conducted at the regional scale, from the southern fringes of the Sahara to the Gulf of Guinea. Profiles of heating rates are computed from airborne LEANDRE 2 (Lidar Embarqué pour l'étude de l'Atmosphère: Nuages Dynamique, Rayonnement et cycle de l'Eau) and space-borne CALIOP (Cloud Aerosol Lidar and Infrared Pathfinder Satellite Observations) lidar observations using two mineral dust model constrained by airborne in situ data and ground-based sunphotometer obtained during the campaign. Complementary spaceborne observations (from the Moderate-resolution Imaging Spectroradiometer-MODIS) and in-situ observations such as dropsondes are also used to take into account the infrared contribution of the water vapour. We investigate the variability of the heating rate on the vertical within a dust plume, as well as the contribution of both shortwave and longwave radiation to the heating rate and the radiative heating rate profiles of dust during daytime and nighttime. The sensitivity of the so-derived heating rate is also analyzed for some key variables for which the associated uncertainties may be large. During daytime, the warming associated with the presence of dust was found to be between 1.5 K day−1 and 4 K day−1, on average, depending on altitude and latitude. Strong warming (i.e. heating rates as high as 8 K day−1) was also observed locally in some limited part of the dust plumes. The uncertainty on the heating rate retrievals in the optically thickest part of the dust plume was estimated to be between 0.5 and 1.4 K day−1. During nighttime much smaller values of heating/cooling are retrieved (less than ±1 K day−1). Furthermore, cooling is observed as the result of the longwave forcing in the dust layer, while warming is observed below the dust layer, in the monsoon layer

Aerosol-Radiation-Cloud Interactions in the South-East Atlantic: First Results from the ORACLES-2016 Deployment and Plans for Future Activities

Southern Africa produces almost a third of the Earths biomass burning (BB) aerosol particles. Particles lofted into the mid-troposphere are transported westward over the South-East (SE) Atlantic, home to one of the three permanent subtropical stratocumulus (Sc) cloud decks in the world. The SE Atlantic stratocumulus deck interacts with the dense layers of BB aerosols that initially overlay the cloud deck, but later subside and may mix into the clouds. These interactions include adjustments to aerosol-induced solar heating and microphysical effects, and their global representation in climate models remains one of the largest uncertainties in estimates of future climate. Hence, new observations over the SE Atlantic have significant implications for regional and global climate change predictions.Our understanding of aerosol-cloud interactions in the SE Atlantic is severely limited. Most notably, we are missing knowledge on the absorptive and cloud nucleating properties of aerosols, including their vertical distribution relative to clouds, on the locations and degree of aerosol mixing into clouds, on the processes that govern cloud property adjustments, and on the importance of aerosol effects on clouds relative to co-varying synoptic scale meteorology.We describe first results from various synergistic, international research activities aimed at studying aerosol-cloud interactions in the region:NASAs airborne ORACLES (ObseRvations of Aerosols Above Clouds and Their IntEractionS) deployment in AugustSeptember of 2016,the DoEs LASIC (Layered Atlantic Smoke Interactions with Clouds) deployment of the ARM Mobile Facility to Ascension Island (June 2016 October 2017), the ground-based components of CNRS AEROCLO-sA (Aerosols Clouds and Fog over the west coast of southern Africa), and ongoing regional-scale integrative, process-oriented science efforts as part of SEALS-sA (Sea Earth Atmosphere Linkages Study in southern Africa).We expect to describe experimental setups as well as showcase initial aerosol and cloud property distributions. Furthermore, we discuss the implementation of future activities in these programs in coordination with the UK Met Offices CLARIFY (CLoud-Aerosol-Radiation Interactions and Forcing) experiment in 2017

OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation

2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein 1 (OGFOD1) is predicted to be a conserved 2OG oxygenase, the catalytic domain of which is related to hypoxia-inducible factor prolyl hydroxylases. OGFOD1 homologs in yeast are implicated in diverse cellular functions ranging from oxygen-dependent regulation of sterol response genes (Ofd1, Schizosaccharomyces pombe) to translation termination/mRNA polyadenylation (Tpa1p, Saccharomyces cerevisiae). However, neither the biochemical activity of OGFOD1 nor the identity of its substrate has been defined. Here we show that OGFOD1 is a prolyl hydroxylase that catalyzes the posttranslational hydroxylation of a highly conserved residue (Pro-62) in the small ribosomal protein S23 (RPS23). Unusually OGFOD1 retained a high affinity for, and forms a stable complex with, the hydroxylated RPS23 substrate. Knockdown or inactivation of OGFOD1 caused a cell type-dependent induction of stress granules, translational arrest, and growth impairment in a manner complemented by wild-type but not inactive OGFOD1. The work identifies a human prolyl hydroxylase with a role in translational regulation