Haverstraw Bay Benthic Habitat Characterization

High-resolution backscatter and bathymetric maps created by multibeam and sidescan sonar surveys were used to identify five different seafloor bottom types within Haverstraw Bay. Grab samples were collected within these areas to characterize sediment properties and macrofauna. Selected sampling locations were revisited and seafloor images were obtained with an HD underwater camera. Multivariate analysis was used to identify the most important factors explaining variations in community structure. Results indicated that categorical variables defining bottom types, grain size, and water depth can explain about 42% of community structure variation. In addition, shell length data collected for Rangia cuneata, an introduced species, indicated that successful spawning and recruitment occurred for this species during 2011, 2012, and 2013. An attempt to relate 2012-2014 hydrophone location data for Atlantic and Shortnose sturgeon to identified bottom types did not produce clear bottom preferences

Inter-aviary distance and visual access influence conservation breeding outcomes in a territorial, endangered bird

Funding for setting up the housing database was provided by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC; grant BB/G023913/2 to C.R.).Species extinctions are becoming a global crisis, affecting biodiversity and ecosystem services, with island populations being particularly vulnerable. In response, conservation managers are increasingly turning to ex situ conservation breeding programs to establish assurance populations and provide a source for release and re-establishment of wild populations. The 'Alalā (Hawaiian crow, Corvus hawaiiensis) is a critically endangered and territorial island corvid that became extinct in the wild in 2002, following a severe and prolonged population decline during the late 20th century. Surviving individuals of the species were brought into captivity to establish an assurance population to serve as a source for reintroduction, which commenced in 2016. We analyzed the extent to which a range of captive housing conditions impact 'Alalā reproductive success, using 19 years of breeding program data. We found that reproductive success was most strongly affected by the distance between aviaries and their closest neighbors and whether breeding pairs had visual access to other adult conspecifics. Pairs located in aviaries that were more spatially isolated and without visual access to conspecifics were more likely to produce fertile eggs than pairs housed in aviaries that were closer to others or those with visual access to other birds. Our results have direct management implications relevant to the design of conservation breeding centers geared towards the recovery of endangered, territorial bird species. Moreover, since suboptimal housing conditions can increase stress levels in captive birds, our findings are also relevant to improving animal welfare for 'Alalā and other species in conservation breeding programs.PostprintPeer reviewe

The antimicrobial activity of a carbon monoxide releasing molecule (EBOR-CORM-1) is shaped by intraspecific variation within3 Pseudomonas aeruginosa populations

Carbon monoxide releasing molecules (CORMs) have been suggested as a new synthetic class of antimicrobials to treat bacterial infections. Here we utilized a novel EBOR-CORM-1 ([NEt4][MnBr2(CO)4]) capable of water-triggered CO-release, and tested its efficacy against a collection of clinical Pseudomonas aeruginosa strains that differ in infection-related virulence traits. We found that while EBOR-CORM-1 was effective in clearing planktonic and biofilm cells of P. aeruginosa strain PAO1 in a concentration dependent manner, this effect was less clear and varied considerably between different P. aeruginosa cystic fibrosis (CF) lung isolates. While a reduction in cell growth was observed after 8 h of CORM application, either no effect or even a slight increase in cell densities and the amount of biofilm was observed after 24 h. This variation could be partly explained by differences in bacterial virulence traits: while CF isolates showed attenuated in vivo virulence and growth compared to strain PAO1, they formed much more biofilm, which could have potentially protected them from the CORM. Even though no clear therapeutic benefits against a subset of isolates was observed in an in vivo wax moth acute infection model, EBOR-CORM-1 was more efficient at reducing the growth of CF isolate co-culture populations harboring intraspecific variation, in comparison with efficacy against more uniform single isolate culture populations. Together these results suggest that CORMs could be effective at controlling genetically diverse P. aeruginosa populations typical for natural chronic CF infections and that the potential benefits of some antibiotics might not be observed if tested only against clonal bacterial populations

The influence of pair duration on reproductive success in the monogamous ‘Alalā (Hawaiian crow, Corvus hawaiiensis)

Conservation breeding program practitioners select potential mates in an attempt to maximize pair compatibility and maintain genetic diversity. Therefore, pair duration, or the number of breeding seasons that individuals retain the same mate, is practitioner-determined in these settings. There is a critical need to evaluate whether pair duration influences reproductive success in ex situ assurance populations, particularly for socially monogamous species. The ‘Alalā (Hawaiian crow, Corvus hawaiiensis) is a monogamous forest bird that is currently extinct in the wild. Today, ‘Alalā exist only in human care for intensive conservation breeding. We analyzed breeding program data from 2018-2021 to determine the effects of ‘Alalā pair duration and age on reproduction (nest building, egg laying, hatching, and fledging). We found that pair duration does not influence reproductive outcomes, and thus practitioners can be more proactive when re-pairing birds. Female and male age, on the other hand, influenced the probability of nest building, clutch production, and overall reproductive success. Nest building and clutch production probabilities were high (near 1) and stable as females aged from 2 to ~ 12 years old, declining sharply thereafter. In males, overall reproductive success (from building robust nests to rearing at least one nestling to fledge) increased with age from 2 to ~ 9 years old, peaked and reached an asymptote with males ≳ 9 to ~ 13 years old, and decreased in males ≳ 13 years old. Thus, integrating age into the pair selection process will increase the likelihood of achieving conservation goals. To our knowledge, we are the first to utilize empirical pair duration results to provide specific management recommendations for mate selection in an avian conservation breeding program. Our findings have critical utility for guiding ‘Alalā pairing decisions, and more broadly underscore the importance of evaluating mate retention and selection protocols in other conservation breeding programs

Integrating “Big Data” into Aquatic Ecology: Challenges and Opportunities

Got “Big Data”? Not sure how best to use it? Big Data is becoming an important facet of aquatic ecology, and researchers must learn to harness it to reap the rewards of using it. The benefits of using Big Data are many, and include advancements in scientific understanding at larger scales and higher resolution, applications to improving environmental management and policy, and public engagement. We aim to demystify the use of Big Data for individual scientists, and provide some food for thought for the aquatic ecology community on how to develop this sphere. To achieve this, we highlight six key challenges: (1) how to recognize if you have Big Data, (2) handling Big Data, (3) issues with classical analytical techniques, (4) verification of Big Data, (5) considerations for data sharing, and (6) community development of knowledge infrastructures. We then present approaches and tools which have been successfully applied to these challenges in aquatic ecology and other scientific fields

Retuning the Catalytic Bias and Overpotential of a [NiFe]-Hydrogenase via a Single Amino Acid Exchange at the Electron Entry/Exit Site

The redox chemistry of the electron entry/exit site in Escherichia coli hydrogenase-1 is shown to play a vital role in tuning biocatalysis. Inspired by nature, we generate a HyaA-R193L variant to disrupt a proposed Arg-His cation-π interaction in the secondary coordination sphere of the outermost, "distal", iron-sulfur cluster. This rewires the enzyme, enhancing the relative rate of H 2 production and the thermodynamic efficiency of H 2 oxidation catalysis. On the basis of Fourier transformed alternating current voltammetry measurements, we relate these changes in catalysis to a shift in the distal [Fe 4S 4] 2+/1+ redox potential, a previously experimentally inaccessible parameter. Thus, metalloenzyme chemistry is shown to be tuned by the second coordination sphere of an electron transfer site distant from the catalytic center

Re-engineering a NiFe hydrogenase to increase the H2 production bias while maintaining native levels of O2 tolerance

Naturally occurring oxygen tolerant NiFe membrane bound hydrogenases have a conserved catalytic bias towards hydrogen oxidation which limits their technological value. We present an Escherichia coli Hyd-1 amino acid exchange that apparently causes the catalytic rate of H2 production to double but does not impact the O2 tolerance

Early Virological and Immunological Events in Asymptomatic Epstein-Barr Virus Infection in African Children

Epstein-Barr virus (EBV) infection often occurs in early childhood and is asymptomatic. However, if delayed until adolescence, primary infection may manifest as acute infectious mononucleosis (AIM), a febrile illness characterised by global CD8+ T-cell lymphocytosis, much of it reflecting a huge expansion of activated EBV-specific CD8+ T-cells. While the events of AIM have been intensely studied, little is known about how these relate to asymptomatic primary infection. Here Gambian children (14–18 months old, an age at which many acquire the virus) were followed for the ensuing six months, monitoring circulating EBV loads, antibody status against virus capsid antigen (VCA) and both total and virus-specific CD8+ T-cell numbers. Many children were IgG anti-VCA-positive and, though no longer IgM-positive, still retained high virus loads comparable to AIM patients and had detectable EBV-specific T-cells, some still expressing activation markers. Virus loads and the frequency/activation status of specific T-cells decreased over time, consistent with resolution of a relatively recent primary infection. Six children with similarly high EBV loads were IgM anti-VCA-positive, indicating very recent infection. In three of these donors with HLA types allowing MHC-tetramer analysis, highly activated EBV-specific T-cells were detectable in the blood with one individual epitope response reaching 15% of all CD8+ T-cells. That response was culled and the cells lost activation markers over time, just as seen in AIM. However, unlike AIM, these events occurred without marked expansion of total CD8+ numbers. Thus asymptomatic EBV infection in children elicits a virus-specific CD8+ T-cell response that can control the infection without over-expansion; conversely, in AIM it appears the CD8 over-expansion, rather than virus load per se, is the cause of disease symptoms

What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol

Background Mesocosm experiments have become increasingly popular in climate change research as they bridge the gap between small-scale, less realistic, microcosm experiments, and large-scale, more complex, natural systems. Characteristics of aquatic mesocosm designs (e.g., mesocosm volume, study duration, and replication) vary widely, potentially affecting the magnitude and direction of effect sizes measured in experiments. In this global systematic review we aim to identify the type, direction and strength of climate warming effects on aquatic species, communities and ecosystems in mesocosm experiments. Furthermore, we will investigate the context-dependency of the observed effects on several a priori determined effect moderators (ecological and methodological). Our conclusions will provide recommendations for aquatic scientists designing mesocosm experiments, as well as guidelines for interpretation of experimental results by scientists, policy-makers and the general public. Methods We will conduct a systematic search using multiple online databases to gather evidence from the scientific literature on the effects of warming experimentally tested in aquatic mesocosms. Data from relevant studies will be extracted and used in a random effects meta-analysis to estimate the overall effect sizes of warming experiments on species performance, biodiversity and ecosystem functions. Experimental characteristics (e.g., mesocosm size and shape, replication-level, experimental duration and design, biogeographic region, community type, crossed manipulation) will be further analysed using subgroup analyses