Deep reefs are not refugium for shallow-water fish communities in the southwestern Atlantic

Unidad de excelencia María de Maeztu CEX2019-000940-M1. The deep reef refugia hypothesis (DRRH) predicts that deep reef ecosystems may act as refugium for the biota of disturbed shallow waters. Because deep reefs are among the most understudied habitats on Earth, formal tests of the DRRH remain scarce. If the DRRH is valid at the community level, the diversity of species, functions, and lineages of fish communities of shallow reefs should be encapsulated in deep reefs. 2. We tested the DRRH by assessing the taxonomic, functional, and phylogenetic diversity of 22 Brazilian fish communities between 2 and 62 m depth. We partitioned the gamma diversity of shallow (30 m) into independent alpha and beta components, accounted for species' abundance, and assessed whether beta patterns were mostly driven by spatial turnover or nestedness. 3. We recorded 3,821 fishes belonging to 85 species and 36 families. Contrary to DRRH expectations, only 48% of the species occurred in both shallow and deep reefs. Alpha diversity of rare species was higher in deep reefs as expected, but alpha diversity of typical and dominant species did not vary with depth. Alpha functional diversity was higher in deep reefs only for rare and typical species, but not for dominant species. Alpha phylogenetic diversity was consistently higher in deep reefs, supporting DRRH expectations. 4. Profiles of taxonomic, functional, and phylogenetic beta diversity indicated that deep reefs were not more heterogeneous than shallow reefs, contradicting expectations of biotic homogenization near sea surface. Furthermore, pairwise beta-diversity analyses revealed that the patterns were mostly driven by spatial turnover rather than nestedness at any depth. 5. Conclusions. Although some results support the DRRH, most indicate that the shallow-water reef fish diversity is not fully encapsulated in deep reefs. Every reef contributes significantly to the regional diversity and must be managed and protected accordingly

Autenticación mediante DNA barcoding de especies de meros legalmente protegidas y en peligro de extinción, sometidas a explotación pesquera, incluyendo el mero Goliat Epinephelus itajara

Fishing strategies are constantly changing to meet the needs for new or alternative food sources. Consequently, management of fishing activities regarding rates of exploitation is essential, as a number of resources have reached situations of overexploitation. The aim of the present study was to use DNA barcoding from the goliath grouper and other exploited epinephelids in order to provide procedures for DNA authentication to be used as evidence for combating putative illegal fishing. The species studied were Epinephelus adscensionis, Mycteroperca bonaci, Mycteroperca interstitialis, Epinephelus itajara, Mycteroperca venenosa, Epinephelus mystacinus, Dermatolepis inermis, Alphestes afer, Cephalopholis fulva, Mycteroperca acutirostris, Rypticus saponaceus, Mycteroperca marginata and Epinephelus morio. Four of these species are the main epinephelids fished in the Atlantic Ocean. Differential patterns of polymerase chain reaction–restriction fragment length polymorphism were obtained from the species and additional single nucleotide polymorphisms were also detected among the four main epinephelids studied. The procedures proved very efficient and we suggest their applicability to the other fish groups as a way to control illegal capture and retail around the world, especially in cases in which filleting and other forms of de-characterization cause a lack of morpho-anatomical key characters.Las estrategias de pesca cambian constantemente para satisfacer las necesidades de fuentes de alimento nuevas o alternativas. En consecuencia, a medida que los recursos alcanzan situaciones de sobreexplotación, resulta esencial establecer procedimientos de inspección de las actividades relacionadas con las tasas de explotación pesquera. El objetivo de este estudio es proponer el uso de la técnica de DNA barcoding para establecer la verificación de la identidad del mero Goliat y otros epinefélidos, a fin de utilizarlo como evidencia para combatir la pesca ilegal cuando se sospeche su ocurrencia. Las especies aquí estudiadas fueron Alphestes afer, Cephalopholis fulva, Dermatolepis inermis, Epinephelus adscensionis, E. itajara, E. morio, E. mystacinus, Mycteroperca acutirostris, M. bonaci, M. interstitialis, M. marginata, M. venenosa y Rypticus saponaceus de las cuales cuatro constituyen las más pescadas en el Océano Atlántico. Fueron encontrados patrones diferenciables de PCR-RFLPs para todas las especies y, además, fue posible detectar SNPs adicionales entre las cuatro especies más explotadas. Los procedimientos aquí empleados fueron muy eficaces por lo que sugerimos su aplicabilidad a otros grupos de peces como medida de control de la captura y comercialización ilegal a nivel mundial, particularmente en aquellos casos en los que el fileteado y otras formas de procesamiento que alteran las características anatómicas y morfológicas impiden su identificación

Brazilian coral reefs in a period of global change: A synthesis

Brazilian coral reefs form structures significantly different from the well-known reef models, as follows: (i) they have a growth form of mushroom-shaped coral pinnacles called "chapeirões", (ii) they are built by a low diversity coral fauna rich in endemic species, most of them relic forms dating back to the Tertiary, and (iii) the nearshore bank reefs are surrounded by siliciclastic sediments. The reefs are distributed in the following four major sectors along the Brazilian coast: the northern, the northeastern and the eastern regions, and the oceanic islands, but certain isolated coral species can be found in warmer waters in embayments of the southern region. There are different types of bank reefs, fringing reefs, isolated "chapeirões" and an atoll present along the Brazilian coast. Corals, milleporids and coralline algae build the rigid frame of the reefs. The areas in which the major coral reefs occur correspond to regions in which nearby urban centers are experiencing accelerated growth, and tourism development is rapidly increasing. The major human effects on the reef ecosystem are mostly associated with the increased sedimentation due to the removal of the Atlantic rainforest and the discharge of industrial and urban effluents. The effects of the warming of oceanic waters that had previously affected several reef areas with high intensity coral bleaching had not shown, by the time of the 2010 event, any episodes of mass coral mortality on Brazilian reefs.Os recifes de coral do Brasil formam estruturas significativamente diferentes dos modelos conhecidos: (i) possuem uma forma de crescimento de pináculos coralíneos em forma de cogumelo, chamados "chapeirões", (ii) são construídos por uma fauna coralínea com baixa diversidade e rica em espécies endêmicas, sendo grande parte destas formas relíquias do período Terciário e (iii) os recifes costeiros estão num ambiente dominado por sedimentos siliciclásticos. Os recifes estão distribuídos em quatro áreas ao longo da costa brasileira: regiões norte, nordeste, leste, e nas ilhas oceânicas, mas espécies isoladas de coral podem ser encontradas em águas mais quentes nas enseadas da região sul. Diferentes tipos de banco recifais, recifes em franja, "chapeirões" isolados e um atol estão presentes ao longo da costa brasileira. Corais, milleporídeos e algas coralinas incrustantes constroem a estrutura rígida dos recifes. As áreas em que ocorrem os maiores recifes de coral correspondem às regiões nas proximidades de centros urbanos que estão experimentando crescimento acelerado e rápido desenvolvimento do turismo. Os principais efeitos antropogênicos sobre o ecossistema recifal estão associados, essencialmente ao aumento da sedimentação devido à remoção da mata atlântica e as descargas de efluentes industriais e urbanos. Os efeitos do aquecimento das águas oceânicas que vem afetando várias áreas de recifes, com alta intensidade de branqueamento de coral, não causaram mortalidade em massa nos recifes brasileiros até o evento de 2010

Low population genetic structure is consistent with high habitat connectivity in a commercially important fish species (Lutjanus jocu)

The level of habitat availability influences genetic divergence among populations and the genetic diversity within populations. In the marine environment, near-shore species are among the most sensitive to habitat changes. Knowledge of how historical environmental change affected habitat availability and genetic variation can be applied to the development of proactive management strategies of exploited species. Here, we modeled the contemporary and historical distribution of Lutjanus jocu in Brazil. We describe patterns of genomic diversity to better understand how climatic cycles might correlate with the species demographic history and current genetic structure. We show that during the Last Glacial Maximum, there were ecological barriers that are absent today, possibly dividing the range of the species into three geographically separated areas of suitable habitat. Consistent with a historical reduction in habitat area, our analysis of demographic changes shows that L. jocu experienced a severe bottleneck followed by a population size expansion. We also found an absence of genetic structure and similar levels of genetic diversity throughout the sampled range of the species. Collectively, our results suggest that habitat availability changes have not obviously influenced contemporary levels of genetic divergence between populations. However, our demographic analyses suggest that the high sensitivity of this species to environmental change should be taken into consideration for management strategies. Furthermore, the general low levels of genetic structure and inference of high gene flow suggest that L. jocu likely constitutes a single stock in Brazilian waters and, therefore, requires coordinated legislation and management across its distribution

Peeling the Otolith of Fish: Optimal Parameterization for Micro-CT Scanning

In this paper, we aim to provide optimal parameters for micro-computed tomography scans of fish otoliths. We tested fifteen different combinations to sagittae. The images were scaled to Hounsfield units, and segmented in two distinct volumes-of-interest (external and internal). The strategy we applied, for identifying optimum scan settings for otoliths, included analyses of the sinogram, the distribution of the Hounsfield units and the signal-to-noise ratio. Based on these tests, the optimum sets of parameters for the acquisition of tomographic images of sagittal otoilths were 80 kV, 220 μA, and 0.5 mm aluminum filter. The method allowed 3D shape analysis, internal and external density distribution, layer-by-layer density segmentation, and a potential objective method to count growth rings in otoliths. It was possible to compare mean densities between species, and we observed a significant difference among them. In addition, there are ontogenic changes, which could be increasing or decreasing the density. In this study, we applied tomography for several otolith analysis, that could be of great interest for future studies in diverse areas that use otoliths as the basic structure of analysis, or represents a new research line called eco-densitometry of otoliths, where tomography could be applied to explore the density within an ecological perspective.Fil: Vasconcelos Filho, Jonas. Universidad Federal Rural Pernambuco; BrasilFil: Thomsen, Felix Sebastian Leo. Universidad Nacional del Sur. Departamento de Ingeniería Eléctrica y de Computadoras; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca; ArgentinaFil: Stosic, Borko. Universidad Federal Rural Pernambuco; BrasilFil: Antonino, Antonio C. D.. Universidad Federal Rural Pernambuco; BrasilFil: Duarte, Daniel A.. Universidad Federal Rural Pernambuco; BrasilFil: Heck, Richard J.. University of Guelph; CanadáFil: Lessa, Rosangela P. T.. Universidad Federal Rural Pernambuco; BrasilFil: Santana, Francisco M.. Universidad Federal Rural Pernambuco; BrasilFil: Ferreira, Beatrice P.. Universidad Federal Rural Pernambuco; BrasilFil: Duarte Neto, Paulo J.. Universidad Federal Rural Pernambuco; Brasi

Foraminifera as health bioindicators in nearshore and offshore Brazilian coral reef sediments

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Foraminifera on coral reefs of Brazil: the FOCO project

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Building leaders for the UN Ocean Science Decade : a guide to supporting early career women researchers within academic marine research institutions

Diverse and inclusive marine research is paramount to addressing ocean sustainability challenges in the 21st century, as envisioned by the UN Decade of Ocean Science for Sustainable Development. Despite increasing efforts to diversify ocean science, women continue to face barriers at various stages of their career, which inhibits their progression to leadership within academic institutions. In this perspective, we draw on the collective experiences of thirty-four global women leaders, bolstered by a narrative review, to identify practical strategies and actions that will help empower early career women researchers to become the leaders of tomorrow. We propose five strategies: (i) create a more inclusive culture, (ii) ensure early and equitable career development opportunities for women ECRs, (iii) ensure equitable access to funding for women ECRs, (iv) offer mentoring opportunities and, (v) create flexible, family-friendly environments. Transformational, meaningful, and lasting change will only be achieved through commitment and collaborative action across various scales and by multiple stakeholders.Peer reviewe

Making subaltern shikaris: histories of the hunted in colonial central India

Academic histories of hunting or shikar in India have almost entirely focused on the sports hunting of British colonists and Indian royalty. This article attempts to balance this elite bias by focusing on the meaning of shikar in the construction of the Gond ‘tribal’ identity in late nineteenth and early twentieth-century colonial central India. Coining the term ‘subaltern shikaris’ to refer to the class of poor, rural hunters, typically ignored in this historiography, the article explores how the British managed to use hunting as a means of state penetration into central India’s forest interior, where they came to regard their Gond forest-dwelling subjects as essentially and eternally primitive hunting tribes. Subaltern shikaris were employed by elite sportsmen and were also paid to hunt in the colonial regime’s vermin eradication programme, which targeted tigers, wolves, bears and other species identified by the state as ‘dangerous beasts’. When offered economic incentives, forest dwellers usually willingly participated in new modes of hunting, even as impact on wildlife rapidly accelerated and became unsustainable. Yet as non-indigenous approaches to nature became normative, there was sometimes also resistance from Gond communities. As overkill accelerated, this led to exclusion of local peoples from natural resources, to their increasing incorporation into dominant political and economic systems, and to the eventual collapse of hunting as a livelihood. All of this raises the question: To what extent were subaltern subjects, like wildlife, ‘the hunted’ in colonial India