Organic Trace Minerals in Environmentally Sustainable Systems

Essential trace minerals (Zn, Cu, Fe, Mn, Se and I) are traditionally included as supplements through mineral premixes in poultry feeds. In comparison to other essential nutrients, as well as energy, they are scarcely studied. The essentiality of a nutrient, by definition, refers to the nutrient role in normal body function, such as growth or egg production, and considers that they cannot be synthesized by the body and, therefore, must be supplied from the feed

Organic Trace Minerals in Environmentally Sustainable Systems

Essential trace minerals (Zn, Cu, Fe, Mn, Se and I) are traditionally included as supplements through mineral premixes in poultry feeds. In comparison to other essential nutrients, as well as energy, they are scarcely studied. The essentiality of a nutrient, by definition, refers to the nutrient role in normal body function, such as growth or egg production, and considers that they cannot be synthesized by the body and, therefore, must be supplied from the feed

Growth performance and nutrient digestibility of broiler chickens as affected by a novel protease

Two experiments evaluated the addition of an exogenous sfericase protease in broiler diets. Experiments were run (Exp1 and Exp2) with 1,848 and 2,100 one-dayold male chicks being allocated into 84 floor pens with 14 replicates of 22 and 25 birds each, respectively. The studies were conducted in completely randomized designs. In Exp1, Standard diets were formulated with energy and AA at marginally lower levels than usual by the Brazilian integration such that broilers were expected to grow at comparatively reduced rates to the industry whereas in Exp2, the Standard diets were formulated using energy and AA as usual by the Brazilian integrations such that broilers were expected to grow comparable to industry rates. Standard diets had ideally balanced amino acids (AA). Matrix diets, in contrast, had reductions of 6% digestible lysine and of 20 kcal AME/kg compared to the Standard. Matrix diets were supplemented with an sfericase protease at 0, 10,000, and 30,000 New Feed Protease units (NFP)/kg. Outcomes showed no interaction between diet and protease in any of the experiments. However, broilers fed Standard diets had higher cumulative body weight gain (BWG) to 35 and 42 d when compared to Matrix fed birds whereas FCR were worse for birds fed the Matrix diets at 35 d in EXP1 and at 35 and 42 d in EXP2. Improvements in FCR were observed when the sfericase protease was added throughout all ages in EXP1 with a beneficial trend (P<0.067) observed in the cumulative FCR at 42 d in EXP2. The ileal digestible crude protein (IDCP) was significantly higher for birds fed Standard feeds in EXP1 with no other differences in digestibility found in any of the experiments. Protease addition led to improvements in ileal digestibility of dry matter (IDM) and IDCP (P < 0.05) compared to no protease addition in EXP1 as well as in ileal digestibility of energy (IDE) when 30,000 protease units were added. The present report demonstrates that the novel sfericase protease was successful in compensate broiler performance when reductions of 6% digestible Lys and 20 kcal/kg AME were imposed. This compensation, however, seemed more notable when birds were fed diets formulated to support moderate rather than maximum growth and having animal protein in the feed formula

Methicillin-susceptible, Doxycycline-resistant Staphylococcus aureus, Côte d’Ivoire

This virulent clone has already spread to other continents

TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen

International audienceBACKGROUND:A substantial proportion of cancer cases present with a metastatic tumor and require further testing to determine the primary site; many of these are never fully diagnosed and remain cancer of unknown primary origin (CUP). It has been previously demonstrated that the somatic point mutations detected in a tumor can be used to identify its site of origin with limited accuracy. We hypothesized that higher accuracy could be achieved by a classification algorithm based on the following feature sets: 1) the number of nonsynonymous point mutations in a set of 232 specific cancer-associated genes, 2) frequencies of the 96 classes of single-nucleotide substitution determined by the flanking bases, and 3) copy number profiles, if available.METHODS:We used publicly available somatic mutation data from the COSMIC database to train random forest classifiers to distinguish among those tissues of origin for which sufficient data was available. We selected feature sets using cross-validation and then derived two final classifiers (with or without copy number profiles) using 80 % of the available tumors. We evaluated the accuracy using the remaining 20 %. For further validation, we assessed accuracy of the without-copy-number classifier on three independent data sets: 1669 newly available public tumors of various types, a cohort of 91 breast metastases, and a set of 24 specimens from 9 lung cancer patients subjected to multiregion sequencing.RESULTS:The cross-validation accuracy was highest when all three types of information were used. On the left-out COSMIC data not used for training, we achieved a classification accuracy of 85 % across 6 primary sites (with copy numbers), and 69 % across 10 primary sites (without copy numbers). Importantly, a derived confidence score could distinguish tumors that could be identified with 95 % accuracy (32 %/75 % of tumors with/without copy numbers) from those that were less certain. Accuracy in the independent data sets was 46 %, 53 % and 89 % respectively, similar to the accuracy expected from the training data.CONCLUSIONS:Identification of primary site from point mutation and/or copy number data may be accurate enough to aid clinical diagnosis of cancers of unknown primary origin

Climate determines transmission hotspots of Polycystic Echinococcosis, a life-threatening zoonotic disease, across Pan-Amazonia

Polycystic Echinococcosis (PE), a neglected life-threatening zoonotic disease caused by the cestode is endemic in the Amazon. Despite being treatable, PE reaches a case fatality rate of around 29% due to late or missed diagnosis. PE is sustained in Pan-Amazonia by a complex sylvatic cycle. The hunting of its infected intermediate hosts (especially the lowland paca ) enables the disease to further transmit to humans, when their viscera are improperly handled. In this study, we compiled a unique dataset of host occurrences (~86000 records) and disease infections (~400 cases) covering the entire Pan-Amazonia and employed different modeling and statistical tools to unveil the spatial distribution of PE's key animal hosts. Subsequently, we derived a set of ecological, environmental, climatic, and hunting covariates that potentially act as transmission risk factors and used them as predictors of two independent Maximum Entropy models, one for animal infections and one for human infections. Our findings indicate that temperature stability promotes the sylvatic circulation of the disease. Additionally, we show how El Niño-Southern Oscillation (ENSO) extreme events disrupt hunting patterns throughout Pan-Amazonia, ultimately affecting the probability of spillover. In a scenario where climate extremes are projected to intensify, climate change at regional level appears to be indirectly driving the spillover of . These results hold substantial implications for a wide range of zoonoses acquired at the wildlife-human interface for which transmission is related to the manipulation and consumption of wild meat, underscoring the pressing need for enhanced awareness and intervention strategies

Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution

This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.[Background]: Genomic analysis of multi-focal renal cell carcinomas from an individual with a germline VHL mutation offers a unique opportunity to study tumor evolution. [Results]: We perform whole exome sequencing on four clear cell renal cell carcinomas removed from both kidneys of a patient with a germline VHL mutation. We report that tumors arising in this context are clonally independent and harbour distinct secondary events exemplified by loss of chromosome 3p, despite an identical genetic background and tissue microenvironment. We propose that divergent mutational and copy number anomalies are contingent upon the nature of 3p loss of heterozygosity occurring early in tumorigenesis. However, despite distinct 3p events, genomic, proteomic and immunohistochemical analyses reveal evidence for convergence upon the PI3K-AKT-mTOR signaling pathway. Four germline tumors in this young patient, and in a second, older patient with VHL syndrome demonstrate minimal intra-tumor heterogeneity and mutational burden, and evaluable tumors appear to follow a linear evolutionary route, compared to tumors from patients with sporadic clear cell renal cell carcinoma. [Conclusions]: In tumors developing from a germline VHL mutation, the evolutionary principles of contingency and convergence in tumor development are complementary. In this small set of patients with early stage VHL-associated tumors, there is reduced mutation burden and limited evidence of intra-tumor heterogeneity.RF and JL received funding from EU FP7 (PREDICT project), EB is a Rosetrees Trust fellow, NM received funding from the Rosetrees Trust, MG is funded by the UK Medical Research Council, IV is funded by Spanish Ministerio de Economía y Competitividad subprograma Ramón y Cajal, and CS is a senior Cancer Research UK clinical research fellow and is funded by Cancer Research UK, the Rosetrees Trust, EU FP7 (projects PREDICT and RESPONSIFY, ID:259303), the Prostate Cancer Foundation, and the Breast Cancer Research Foundation. This study was supported by researchers at the National Institute for Health Research Biomedical Research Centres at University College London Hospitals and at the Royal Marsden Hospital.Peer Reviewe