Success factors in new land-based industries

Part of the changing structure of New Zealand agriculture and horticulture includes a move from traditional land uses to new land uses. Not all new land uses, however, become established industries. The research objective of this study was to focus on a wide range of new land-based industries and address the question of why some new industries succeed and why others do not. The research also introduces a relatively new method, the Qualitative Comparative Analysis method, which identifies critical factors in industry success in a way that combines the richness of case studies with the rigour of comparative analysis. Results will be of interest to primary producers seeking to learn from recent experience of new industries, and to policy-makers interested in promoting new land-based industries.Funding for this research was provided by the Foundation for Research, Science, and Technology, via Crop and Food Research under Contract No. C02810 and entitled New Crops

Determining the Metabolic Footprints of Hydrocarbon Degradation Using Multivariate Analysis

The functional dynamics of microbial communities are largely responsible for the clean-up of hydrocarbons in the environment. However, knowledge of the distinguishing functional genes, known as the metabolic footprint, present in hydrocarbon-impacted si

An updated assessment of the Agulhas sole resource, Austroglossus pectoralis

This analysis updates that of Butterworth and Glazer (2014), which considered two hypotheses of decreasing catchability and of decreasing productivity to account for a recent large drop in CPUE. Two further years of data reflect some increase in CPUE. For the most pessimistic scenario (a decrease in productivity, which remains at its current reduced level into the future), projections are somewhat more positive than previously, with recent biomasses estimated higher and projected to decrease more slowly if the 2013 effort level is maintained

Single-chain Fv phage display propensity exhibits strong positive correlation with overall expression levels

<p>Abstract</p> <p>Background</p> <p>Single chain Fvs (scFvs) are widely applied in research, diagnostics and therapeutic settings. Display and selection from combinatorial libraries is the main route to their discovery and many factors influence the success of this process. They exhibit low thermodynamic stability, resulting in low levels of premature cytosolic folding or aggregation which facilitates <it>sec </it>YEG-mediated translocation and phage in <it>E. coli</it>. However, there is little data analysing how this is related to and influenced by scFv protein expression.</p> <p>Results</p> <p>We characterised the relationship between overall scFv expression and display propensity for a panel of 15 anti-tetanus toxin scFvs and found a strong positive correlation (Rho = 0.88, p < 0.005) between the two parameters. Display propensity, overall expression and soluble localisation to the periplasm and extracellular fractions were clone specific characteristics which varied despite high levels of sequence homology. There was no correlation between display of scFv or its expression in non-fused (free) form with soluble scFv localisation to the periplasm or culture supernatant. This suggests that divergence in the fate of scFv-pIII and non-fused scFv after translocation to the periplasm accounts for the observed disparity. Differential degrees of periplasmic aggregation of non-fused scFv between clones may affect the partitioning of scFv in the periplasm and culture supernatant abrogating any correlation. We suggest that these factors do not apply to the scFv-pIII fusion since it remains anchored to the bacterial inner membrane as part of the innate phage packaging and budding process.</p> <p>Conclusion</p> <p>We conclude that in the absence of premature cytosolic aggregation or folding, the propensity of a scFv to be displayed on phage is directly related to its overall expression level and is thus indirectly influenced by factors such as codon bias, mRNA abundance or putative DNA motifs affecting expression. This suggests that scFvs capable of high overall expression and display levels may not produce high yields of non phage-fused soluble protein in either the periplasmic or extracellular fractions of <it>E. coli</it>. This should be considered when screening clones selected from combinatorial libraries for further study.</p> <p>The nucleotide and amino acid sequences of the anti-tetanus toxin scFvs have been deposited in the EMBL data base: accession numbers-C1: <ext-link ext-link-type="embl" ext-link-id="AM749134">AM749134</ext-link>, C2: <ext-link ext-link-type="embl" ext-link-id="AM749135">AM749135</ext-link>, C3: <ext-link ext-link-type="embl" ext-link-id="AM749136">AM749136</ext-link>, C4: <ext-link ext-link-type="embl" ext-link-id="AM749137">AM749137</ext-link>, C5: <ext-link ext-link-type="embl" ext-link-id="AM749138">AM749138</ext-link>, N1: <ext-link ext-link-type="embl" ext-link-id="AM749139">AM749139</ext-link>, N2: <ext-link ext-link-type="embl" ext-link-id="AM749140">AM749140</ext-link>, N3: <ext-link ext-link-type="embl" ext-link-id="AM749141">AM749141</ext-link>, N4: <ext-link ext-link-type="embl" ext-link-id="AM749142">AM749142</ext-link>, N5: <ext-link ext-link-type="embl" ext-link-id="AM749143">AM749143</ext-link> J1; <ext-link ext-link-type="embl" ext-link-id="AM749144">AM749144</ext-link>, J2: <ext-link ext-link-type="embl" ext-link-id="AM749145">AM749145</ext-link>, J3: <ext-link ext-link-type="embl" ext-link-id="AM749146">AM749146</ext-link>, J4: <ext-link ext-link-type="embl" ext-link-id="AM749147">AM749147</ext-link>, J5: <ext-link ext-link-type="embl" ext-link-id="AM749148">AM749148</ext-link>.</p

Almost Block Diagonal Linear Systems: Sequential and Parallel Solution Techniques, and Applications

Almost block diagonal (ABD) linear systems arise in a variety of contexts, specifically in numerical methods for two-point boundary value problems for ordinary differential equations and in related partial differential equation problems. The stable, efficient sequential solution of ABDs has received much attention over the last fifteen years and the parallel solution more recently. We survey the fields of application with emphasis on how ABDs and bordered ABDs (BABDs) arise. We outline most known direct solution techniques, both sequential and parallel, and discuss the comparative efficiency of the parallel methods. Finally, we examine parallel iterative methods for solving BABD systems. Copyright (C) 2000 John Wiley & Sons, Ltd

A long-term clinical trial on the efficacy and safety profile of doxofylline in Asthma: The LESDA study.

Doxofylline, an oral methylxanthine with bronchodilator and anti-inflammatory activities, offers a promising alternative to theophylline due to its superior efficacy/safety profile. No long-term studies on the efficacy and safety of doxofylline are currently available in asthma. The aim of the Long-term clinical trial on the Efficacy and Safety profile of Doxofylline in Asthma (LESDA) study was to investigate the safety and efficacy profile of doxofylline administered for one year in asthmatic patients. LESDA was a multicenter, open-label, Phase III, clinical trial in which adult asthmatic patients received the same treatment (oral doxofylline 400 mg t.i.d.) for one year. Efficacy was assessed through periodic pulmonary function tests and by having the subjects keep monthly records of asthma events rates and use of salbutamol as rescue medication. The rate of adverse events (AEs) was recorded during the study. Three-hundred nine patients were screened and allocated in the study. Doxofylline significantly improved the change from baseline in forced expiratory volume in 1 s (FEV1) (+16.90 ± 1.81%, P < 0.001 vs. baseline). Doxofylline also significantly improved the rate of asthma events (events/day: -0.57 ± 0.18, P < 0.05 vs. baseline) and the use of salbutamol as rescue medication (puffs/day: -1.48 ± 0.25, P < 0.01 vs. baseline). The most common AEs were nausea (14.56%), headache (14.24%), insomnia (10.68%), and dyspepsia (10.03%). There were neither serious AEs nor deaths during or shortly after the study. Concluding, doxofylline is effective and well tolerated when administered chronically in asthmatic patients

Large Eddy Simulation of Particle Agglomeration with Shear Breakup in Turbulent Channel Flow

A systematic technique is developed for studying particle dynamics as induced by a turbulent liquid flow, in which transport, agglomeration, and breakup are considered. An Eulerian description of the carrier phase obtained using large eddy simulation is adopted and fully coupled to a Lagrangian definition of the particle phase using a pointwise discrete particle simulation. An efficient hard-sphere interaction model with deterministic collision detection enhanced with an energy-balance agglomeration model was implemented in an existing computational fluid dynamic code for turbulent multiphase flow. The breakup model adopted allows instantaneous breakup to occur once the transmitted hydrodynamic stress within an agglomerate exceeds a critical value, characterised by a fractal dimension and the size of the agglomerate. The results from the developed technique support the conclusion that the local turbulence kinetic energy, its dissipation rate, and the agglomerate fractal dimension control the kinetics of the agglomeration and de-agglomeration processes, and as well as defining with time the morphology of the particles and their resultant transport. Overall, the results are credible and consistent with the expected physical behavior and with known theories

Primary extranodal soft-tissue B-cell lymphoma with abundant immunoglobulin inclusions mimicking adult rhabdomyoma: a case report

<p>Abstract</p> <p>Introduction</p> <p>Immunoglobulin inclusions are found in B-cell neoplasms as well as in crystal-storing histiocytosis associated with B-cell lymphoproliferative disorders. At times, the deposits may be so profound as to obscure the diagnosis and may even lead to misdiagnosis. We report one case of low-grade extranodal lymphoplasmacytic lymphoma with abundant immunoglobulin inclusions and emphasize the need for immunophenotyping and molecular assay to make the right decision in diagnosis. To the best of our knowledge, this is the first report of extranodal B-cell lymphoma with abundant intracellular immunoglobulin accumulation.</p> <p>Case presentation</p> <p>A 62-year-old Asian man from China presented with a 13-year history of a right shoulder mass with recent ongoing pain. A desmoplastic fibroma located in the posterior muscles of the neck was suggested by magnetic resonance imaging, and extended local excision was performed. A biopsy, however, revealed large, isolated rhabdoid cells in a diffuse pattern with mild atypia and eosinophilic cytoplasm. Clustered lymphoid cells were interspersed among these cells. The diagnosis was initially suggested to be adult rhabdomyoma. The final diagnosis of lymphoma was made after immunohistochemical, ultrastructural and molecular studies.</p> <p>Conclusion</p> <p>We emphasize this histopathologic and immunohistochemical finding because of the potential for confusion with other tumors or disorders, such as adult rhabdomyoma or crystal-storing histiocytosis.</p