Green Plants in the Red: A Baseline Global Assessment for the IUCN Sampled Red List Index for Plants

Plants provide fundamental support systems for life on Earth and are the basis for all terrestrial ecosystems; a decline in plant diversity will be detrimental to all other groups of organisms including humans. Decline in plant diversity has been hard to quantify, due to the huge numbers of known and yet to be discovered species and the lack of an adequate baseline assessment of extinction risk against which to track changes. The biodiversity of many remote parts of the world remains poorly known, and the rate of new assessments of extinction risk for individual plant species approximates the rate at which new plant species are described. Thus the question ‘How threatened are plants?’ is still very difficult to answer accurately. While completing assessments for each species of plant remains a distant prospect, by assessing a randomly selected sample of species the Sampled Red List Index for Plants gives, for the first time, an accurate view of how threatened plants are across the world. It represents the first key phase of ongoing efforts to monitor the status of the world’s plants. More than 20% of plant species assessed are threatened with extinction, and the habitat with the most threatened species is overwhelmingly tropical rain forest, where the greatest threat to plants is anthropogenic habitat conversion, for arable and livestock agriculture, and harvesting of natural resources. Gymnosperms (e.g. conifers and cycads) are the most threatened group, while a third of plant species included in this study have yet to receive an assessment or are so poorly known that we cannot yet ascertain whether they are threatened or not. This study provides a baseline assessment from which trends in the status of plant biodiversity can be measured and periodically reassessed

Notes on phytosociology of Juniperus excelsa in Macedonia (southern Balkan Peninsula)

Juniperus excelsa is an East Mediterranean species found also in marginal, sub-mediterranean regions of the southern part of the Balkan Peninsula. It prefers shallow soils in the warmest habitats of the zone of thermophilous deciduous forests. In the past the rank of alliance and the name of Juniperion excelsae-foetidissimae have been suggested for the vegetation dominated by Juniperus excelsa in the Balkan Peninsula. In this paper we present the valid description of the alliance in accordance with the International Code of Phytosociological Nomenclature. The validation of the Juniperion excelsae-foetidissimae required description of a new association - the Querco trojanae-Juniperetum excelsae. The Juniperion excelsae-foetidissimae is classified within the order of Quercetalia pubescentis Klika 1933 (the Quercetea pubescentis Doing-Kraft ex Scamoni et Passarge 1959)

Stable carbon isotope analysis on fossil Cedrus pollen shows summer aridification in Morocco during the last 5000 years

Quantitative climate reconstructions from pollen typically rely on empirical relationships between pollen abundances or assemblages and climate, such as the modern analogue technique. However, these techniques may be problematic when applied to fossil sequences, as they cannot separate anthropogenic from climatic influence on pollen assemblages. Here, we reconstruct Mid‐ to Late Holocene summer aridity in the Middle Atlas, Morocco, using stable carbon isotope analysis of isolated fossil Cedrus pollen. This approach is based on well‐documented plant physiological responses to moisture stress and is therefore independent of vegetation composition. We find that there has been a general long‐term trend of increasing summer aridity in the region during the last 5000 years to the present day. The gradual decline of Cedrus atlantica forest in the Late Holocene follows this aridity trend. Additionally, we show how isolating a specific pollen type for carbon isotope analysis yields a robust climate signal, versus using pollen concentrates or bulk sediment. Our findings indicate that climate has become drier in the region and confirms the Mid‐ to Late Holocene aridification trend observed more widely in the western Mediterranean, using a novel proxy for this region with good potential for wider application in other environments

Climate change jointly with migration ability affect future range shifts of dominant fir species in Southwest China

Aim As a prominent geographical distribution centre for the dark coniferous forests, mountains of Southwest China (MSWC) is experiencing an unprecedented warming trend, posing severe challenges to the survival of dominant fir (Abies) species. Although plant's migration ability is a prerequisite for its survival in changing environments, it has often been ignored in species distribution models (SDMs). This study aimed to quantify the magnitude and direction of range changes by the year 2080 for six dominant fir species, that is Abies recurvata, Abies faxoniana, Abies squamata, Abies ernestii, Abies forrestii and Abies georgei, with an emphasis on exploring the relationship between migration ability and projected distributions. Location The mountains of Southwest China. Methods We applied the Maximum Entropy (Maxent) algorithm to calibrate ecological niche models and to project the climatically suitable areas (CSAs) of each species under two emission scenarios (RCP 4.5 and RCP 8.5). Additionally, we delimited future species ranges by three migration scenarios (full-, no- and partial-migration scenarios). Results The simulations showed the distinctive responses of the six fir species to anthropogenic climate change (ACC). By 2080, the distribution areas of Abies recurvata were projected to decline only in the no-migration scenario but increase under the full- and partial-migration scenarios, while the other five species were projected to decline in the majority of emission x migration scenarios. Fir species in the southern region were predicted to be more vulnerable to ACC due to the larger losses in CSAs and a stronger effect of the partial-migration scenario on the newly colonized areas of this group. The studied species showed a simulated migration trend (northward and westward) to the interior Qinghai-Tibet Plateau under ACC. Main conclusions Benefits or losses for species under ACC depended on the geographical location, their ecological niches and migration abilities, which provide essential insights for a spatial conservation assessment of biodiversity hotspots in the future.Peer reviewe

Protein folding on the ribosome studied using NMR spectroscopy

NMR spectroscopy is a powerful tool for the investigation of protein folding and misfolding, providing a characterization of molecular structure, dynamics and exchange processes, across a very wide range of timescales and with near atomic resolution. In recent years NMR methods have also been developed to study protein folding as it might occur within the cell, in a de novo manner, by observing the folding of nascent polypeptides in the process of emerging from the ribosome during synthesis. Despite the 2.3 MDa molecular weight of the bacterial 70S ribosome, many nascent polypeptides, and some ribosomal proteins, have sufficient local flexibility that sharp resonances may be observed in solution-state NMR spectra. In providing information on dynamic regions of the structure, NMR spectroscopy is therefore highly complementary to alternative methods such as X-ray crystallography and cryo-electron microscopy, which have successfully characterized the rigid core of the ribosome particle. However, the low working concentrations and limited sample stability associated with ribosome-nascent chain complexes means that such studies still present significant technical challenges to the NMR spectroscopist. This review will discuss the progress that has been made in this area, surveying all NMR studies that have been published to date, and with a particular focus on strategies for improving experimental sensitivity

Resin tapping in Pinus pinaster: effects on growth and response function to climate

Dendrocronología sobre Pinus pinaster, como la recolección de resina y los factores climáticos han afectado a su crecimiento

Beoordeling natuurakkoord : globale toetsing van het onderhandelingsakkoord decentralisatie natuur

Het Planbureau voor de Leefomgeving (PBL) heeft op verzoek van het kabinet het ‘Onderhandelingsakkoord decentralisatie natuur’ getoetst. Het Rijk draagt, met het van kracht worden van dit akkoord, het natuurbeleid over aan de provincies. Daarvoor voegt het Rijk jaarlijks 100 miljoen euro toe aan het Provinciefonds. Een belangrijk onderdeel van dat beleid, de Ecologische Hoofdstructuur (EHS), wordt in 2021 afgerond, maar zal dan kleiner van omvang zijn dan oorspronkelijk gepland. De provincies worden verantwoordelijk voor het beheer van de EHS. Met al deze wijzigingen vermindert het Rijk zijn uitgaven voor natuur en landschap met twee derde deel. De vraag die het kabinet aan het PBL heeft gesteld, is of Nederland met de uitvoering van het akkoord en de voorgestelde bezuinigingen kan voldoen aan de internationale verplichtingen en doelstellingen, die voortvloeien uit onder andere de Europese Vogel- en Habitatrichtlijnen

Adventures in the Enormous: A 1.8 Million Clone BAC Library for the 21.7 Gb Genome of Loblolly Pine

Loblolly pine (LP; Pinus taeda L.) is the most economically important tree in the U.S. and a cornerstone species in southeastern forests. However, genomics research on LP and other conifers has lagged behind studies on flowering plants due, in part, to the large size of conifer genomes. As a means to accelerate conifer genome research, we constructed a BAC library for the LP genotype 7-56. The LP BAC library consists of 1,824,768 individually-archived clones making it the largest single BAC library constructed to date, has a mean insert size of 96 kb, and affords 7.6X coverage of the 21.7 Gb LP genome. To demonstrate the efficacy of the library in gene isolation, we screened macroarrays with overgos designed from a pine EST anchored on LP chromosome 10. A positive BAC was sequenced and found to contain the expected full-length target gene, several gene-like regions, and both known and novel repeats. Macroarray analysis using the retrotransposon IFG-7 (the most abundant repeat in the sequenced BAC) as a probe indicates that IFG-7 is found in roughly 210,557 copies and constitutes about 5.8% or 1.26 Gb of LP nuclear DNA; this DNA quantity is eight times the Arabidopsis genome. In addition to its use in genome characterization and gene isolation as demonstrated herein, the BAC library should hasten whole genome sequencing of LP via next-generation sequencing strategies/technologies and facilitate improvement of trees through molecular breeding and genetic engineering. The library and associated products are distributed by the Clemson University Genomics Institute (www.genome.clemson.edu)

HEXIM1 targets a repeated GAUC motif in the riboregulator of transcription 7SK and promotes base pair rearrangements

7SK snRNA, an abundant RNA discovered in human nucleus, regulates transcription by RNA polymerase II (RNAPII). It sequesters and inhibits the transcription elongation factor P-TEFb which, by phosphorylation of RNAPII, switches transcription from initiation to processive elongation and relieves pauses of transcription. This regulation process depends on the association between 7SK and a HEXIM protein, neither isolated partner being able to inhibit P-TEFb alone. In this work, we used a combined NMR and biochemical approach to determine 7SK and HEXIM1 elements that define their binding properties. Our results demonstrate that a repeated GAUC motif located in the upper part of a hairpin on the 5′-end of 7SK is essential for specific HEXIM1 recognition. Binding of a peptide comprising the HEXIM Arginine Rich Motif (ARM) induces an opening of the GAUC motif and stabilization of an internal loop. A conserved proline-serine sequence in the middle of the ARM is shown to be essential for the binding specificity and the conformational change of the RNA. This work provides evidences for a recognition mechanism involving a first event of induced fit, suggesting that 7SK plasticity is involved in the transcription regulation