A temporally cyclic growth model of urban spatial morphology in China: evidence from Kunming Metropolis

Rapid urbanization and complexity of political-economic transition in China has brought about continuous and remarkable changes of urban morphology over the past decades, which were driven by a mixture of spatial, social-economic and institutional forces. Understanding such urban morphological evolution requires new mixed evidences and holistic perspectives. In this paper, it is argued that two dominant types of urban growth in China: low-density expansion and high-density infill might be driven by different forces at different stages. To interpret the processes of urban development, two easy-to-understand morphological indicators: expansion-induced investment density index” (EID) and “infill-induced investment density index” (IID) are defined to measure the investment density per unit of developed land and used to compare the morphological changes between different phases in a long period by integrating spatial and socio-economic data. The temporal variation of these indicators suggests a cyclic growth model (CGM), which means the periodic switch between low density expansion and high-density infill. Using Kunming metropolis as a case study, this paper has confirmed that its urban morphological evolution from 1950-2014 was periodically and reciprocally driven by a set of vis-à-vis dualistic dynamics, in which low-density expansion is led by pro-growth infrastructure oriented public investment, while the high-density infill is activated by collective and rational actions of individual enterprises and their economic behaviors. It is concluded that the confirmed CGM model, together with two morphological indicators, offers a new holistic perspective and method to easily and integrally interpret urban morphological evolution and accordingly has potential theoretical implications for reasonably understanding the urbanisation in China

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Funder: NCI U24CA211006Abstract: The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) curated consensus somatic mutation calls using whole exome sequencing (WES) and whole genome sequencing (WGS), respectively. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2,658 cancers across 38 tumour types, we compare WES and WGS side-by-side from 746 TCGA samples, finding that ~80% of mutations overlap in covered exonic regions. We estimate that low variant allele fraction (VAF < 15%) and clonal heterogeneity contribute up to 68% of private WGS mutations and 71% of private WES mutations. We observe that ~30% of private WGS mutations trace to mutations identified by a single variant caller in WES consensus efforts. WGS captures both ~50% more variation in exonic regions and un-observed mutations in loci with variable GC-content. Together, our analysis highlights technological divergences between two reproducible somatic variant detection efforts

HIGHLIGHTS FROM THE CONCEPTUAL DESIGN REPORT OF THE SOFT X-RAY LASER AT MAX IV

The SXL (Soft X-ray Laser) project developed a conceptual design for a soft X-ray Free Electron Laser (FEL) in the 1-5 nm wavelength range, driven by the existing MAX IV 3 GeV linac. In this contribution we will focus on the FEL operation modes developed for the first phase of the project based on two different linac modes. The design work was supported by the Knut and Alice Wallenberg foundation and by several Swedish universities and organizations

Analysis of the membrane proteome of ciprofloxacin-resistant macrophages by stable isotope labeling with amino acids in cell culture (SILAC)

Overexpression of multidrug transporters is a well-established mechanism of resistance to chemotherapy, but other changes may be co-selected upon exposure to drugs that contribute to resistance. Using a model of J774 macrophages made resistant to the fluoroquinolone antibiotic ciprofloxacin and comparing it with the wild-type parent cell line, we performed a quantitative proteomic analysis using the stable isotope labeling with amino acids in cell culture technology coupled with liquid chromatography electrospray ionization Fourier transform tandem mass spectrometry (LC-ESI-FT-MS/MS) on 2 samples enriched in membrane proteins (fractions F1 and F2 collected from discontinuous sucrose gradient). Nine hundred proteins were identified with at least 3 unique peptides in these 2 pooled fractions among which 61 (F1) and 69 (F2) showed a significantly modified abundance among the 2 cell lines. The multidrug resistance associated protein Abcc4, known as the ciprofloxacin efflux transporter in these cells, was the most upregulated, together with Dnajc3, a protein encoded by a gene located downstream of Abcc4. The other modulated proteins are involved in transport functions, cell adhesion and cytoskeleton organization, immune response, signal transduction, and metabolism. This indicates that the antibiotic ciprofloxacin is able to trigger a pleiotropic adaptative response in macrophages that includes the overexpression of its efflux transporter