GO-SHIP Repeat Hydrography Nutrient Manual: The Precise and Accurate Determination of Dissolved Inorganic Nutrients in Seawater, Using Continuous Flow Analysis Methods

The GO-SHIP nutrient manual covers all aspects of nutrient analysis from basic sample collection and storage, specifically for Continuous Flow analysis using an Auto-Analyzer, and describes some specific nutrient methods for Nitrate, Nitrite, Silicate, Phosphate and Ammonium that are in use by many laboratories carrying out at-sea analysis and repeat hydrography sections across the world. The focus is on segmented flow analyzers not flow injection analyzers. It also covers laboratory best practices including quality control and quality assurance (QC/QA) procedures to obtain the best results, and suggests protocols for the use of reference materials (RM) and certified reference materials (CRMs)

The Effects of Dietary Polyphenols on Circulating Cardiovascular Disease Biomarkers and Iron Status:A Systematic Review

The prevalence of cardiovascular disease (CVD) is rising worldwide, remaining the major cause of death in developed countries. Polyphenols have been shown to have cardioprotective properties; however, their impact on iron bioavailability and potential impact on other aspects of health is unclear. A systematic review was undertaken to evaluate the current status of the relationship between habitual polyphenol consumption, iron status, and circulating biomarkers of CVD. Following the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) 2009 guidelines, searches were performed across 5 electronic databases (PubMed, Cochrane Library, Scopus, Web of Science, and CINAHL) to identify randomized controlled trials which investigated the effects of polyphenol consumption on inflammatory markers, serum lipid profile, and iron absorption and bioavailability. In total, 1174 records were identified, with only 7 studies meeting the inclusion criteria. The selected studies involved 133 participants and used a variety of foods and supplements, including olive oil and cherries, rich in polyphenols including hydroxytyrosol, quercetin, and resveratrol, as well as catechin enriched drinks. The duration of the studies ranged from between 56 and 145 days, with total polyphenolic content of the food items and supplements ranging from 45 to 1015 mg (per 100 g). Polyphenols did not appear to interfere with iron status, and most studies reported improvements in inflammatory markers and lipid profile. While these results are promising, the limited number of studies and considerable heterogeneity across the interventions support the need for more extensive trials assessing the relationship between polyphenol intake, iron bioavailability, and CVD risk

Determining Atlantic Ocean province contrasts and variations

The Atlantic Meridional Transect (AMT) series of twenty-five cruises over the past twenty years has produced a rich depth-resolved biogeochemical in situ data resource consisting of a wealth of core variables. These multiple core datasets, key to the operation of AMT, such as temperature, salinity, oxygen and inorganic nutrients, are often only used as ancillary measurements for contextualising hypothesis-driven process studies. In this paper these core in situ variables, alongside data drawn from satellite Earth Observation (EO) and modelling, have been analysed to determine characteristic oceanic province variations encountered over the last twenty years on the AMT through the Atlantic Ocean. The EO and modelling analysis shows the variations of key environmental variables in each province, such as surface currents, the net heat flux and subsequent large scale biological responses, such as primary production. The in situ core dataset analysis allows the variation in features such as the tropical oxygen minimum zone to be quantified as well as showing clear contrasts between the provinces in nutrient stoichiometry. Such observations and relationships can be used within basin scale biogeochemical models to set realistic variation ranges

Latitudinal variability and adaptation of phytoplankton in the Atlantic Ocean

This study assessed the variability of a range of phytoplankton groups between repeat cruises over the mid�Atlantic Ocean (50◦N-50◦S), and demonstrated the important contribution of the pico-phytoplankton to the microalgal biomass in the oligotrophic tropical and sub-tropical regions. Pigment data from two meridional transects were analysed by quantitative chemotaxonomic analysis (CHEMTAX) to yield information concerning the composition of phytoplankton communities along the transects. Total chlorophyll a (TChla) in Octo�ber–November 2012 (AMT22) and 2013 (AMT23) varied from 0.03 mg m− 3 in the southern Sub-Tropical Gyre to 1.13 and 1.92 mg m− 3 at 40o S and 42o S respectively. Synechococcus accounted for 35–50% and Prochlorococcus 30–35% of the TChla in oligotrophic surface waters on AMT22, while haptophytes dominated the temperate regions. Prochlorococcus was dominant (30–60%) on AMT23, with Synechococcus contributing 20–40% and haptophytes 10–20%, and it was noted that the dominance of Prochlorococcus occurred in water masses where the inorganic nitrate concentrations were extremely low (≤0.02 mmol m− 3 ). Prochlorococcus and haptophytes dominated the deep chlorophyll maximum (DCM) on AMT22, with the Synechococcus proportion being low, while Prochlorococcus was generally dominant on AMT23, although Synechococcus and haptophytes were also prominent. Photo-pigment indices indicated that chlorophyll b was mainly associated with Prochlorococcus but also related to prasinophytes. Chlorophyll c and photosynthetic carotenoids increased with an increase in the proportion of haptophytes and to a lesser extent with the proportion of diatoms and pelagophytes. Pro�chlorococcus and Synechococcus were the main contributors to the photoprotective carotenoids and relationships indicated that Synechococcus accounted for more of this pool in 2012, but the Prochlorococcus contribution was greater in 2013. Temperature, stratification, nutrients and light appeared to be the main hydrographic variables influencing phytoplankton composition along the transects

On the Seasonal Dynamics of Phytoplankton Chlorophyll-a Concentration in Nearshore and Offshore Waters of Plymouth, in the English Channel: Enlisting the Help of a Surfer

This is the final version. Available on open access from MDPI via the DOI in this recordData Availability Statement: Surfer data collected are openly available through the British Oceanographic Data Centre https://www.bodc.ac.uk/data/published_data_library/catalogue/10.5285/d6a5a863-a43d-28a9-e053-6c86abc0b1f4/). L4 datasets are available through the Western Channel Observatory (www.westernchannelobservatory.org.uk). Satellite data used are freely available through NASA (https://oceancolor.gsfc.nasa.gov) and ESA (https://climate.esa.int/en/projects/ocean-colour/).The role of phytoplankton as ocean primary producers and their influence on global biogeochemical cycles makes them arguably the most important living organisms in the sea. Like plants on land, phytoplankton exhibit seasonal cycles that are controlled by physical, chemical, and biological processes. Nearshore coastal waters often contain the highest levels of phytoplankton biomass. Yet, owing to difficulties in sampling this dynamic region, less is known about the seasonality of phytoplankton in the nearshore (e.g., surf zone) compared to offshore coastal, shelf and open ocean waters. Here, we analyse an annual dataset of chlorophyll-a concentration—a proxy of phytoplankton biomass—and sea surface temperature (SST) collected by a surfer at Bovisand Beach in Plymouth, UK on a near weekly basis between September 2017 and September 2018. By comparing this dataset with a complementary in-situ dataset collected 7 km offshore from the coastline (11 km from Bovisand Beach) at Station L4 of the Western Channel Observatory, and guided by satellite observations of light availability, we investigated differences in phytoplankton seasonal cycles between nearshore and offshore coastal waters. Whereas similarities in phytoplankton biomass were observed in autumn, winter and spring, we observed significant differences between sites during the summer months of July and August. Offshore (Station L4) chlorophyll-a concentrations dropped dramatically, whereas chlorophyll-a concentrations in the nearshore (Bovsiand Beach) remained high. We found chlorophyll-a in the nearshore to be significantly positively correlated with SST and PAR over the seasonal cycle, but no significant correlations were observed at the offshore location. However, offshore correlation coefficients were found to be more consistent with those observed in the nearshore when summer data (June–August 2018) were removed. Analysis of physical (temperature and density) and chemical variables (nutrients) suggest that the offshore site (Station L4) becomes stratified and nutrient limited at the surface during the summer, in contrast to the nearshore. However, we acknowledge that additional experiments are needed to verify this hypothesis. Considering predicted changes in ocean stratification, our findings may help understand how the spatial distribution of phytoplankton phenology within temperate coastal seas could be impacted by climate change. Additionally, this study emphasises the potential for using marine citizen science as a platform for acquiring environmental data in otherwise challenging regions of the ocean, for understanding ecological indicators such as phytoplankton abundance and phenology. We discuss the limitations of our study and future work needed to explore nearshore phytoplankton dynamics.UK Research and InnovationLost Bird ProjectNatural Environment Research Council (NERC)European Regional Development Fund (ERDF

TgICMAP1 Is a Novel Microtubule Binding Protein in Toxoplasma gondii

The microtubule cytoskeleton provides essential structural support for all eukaryotic cells and can be assembled into various higher order structures that perform drastically different functions. Understanding how microtubule-containing assemblies are built in a spatially and temporally controlled manner is therefore fundamental to understanding cell physiology. Toxoplasma gondii, a protozoan parasite, contains at least five distinct tubulin-containing structures, the spindle pole, centrioles, cortical microtubules, the conoid, and the intra-conoid microtubules. How these five structurally and functionally distinct sets of tubulin containing structures are constructed and maintained in the same cell is an intriguing problem. Previously, we performed a proteomic analysis of the T. gondii apical complex, a cytoskeletal complex located at the apical end of the parasite that is composed of the conoid, three ring-like structures, and the two short intra-conoid microtubules. Here we report the characterization of one of the proteins identified in that analysis, TgICMAP1. We show that TgICMAP1 is a novel microtubule binding protein that can directly bind to microtubules in vitro and stabilizes microtubules when ectopically expressed in mammalian cells. Interestingly, in T. gondii, TgICMAP1 preferentially binds to the intra-conoid microtubules, providing us the first molecular tool to investigate the intra-conoid microtubule assembly process during daughter construction

Monitoring Keap1-Nrf2 interactions in single live cells

AbstractThe transcription factor NF-E2 p45-related factor 2 (Nrf2) and its negative regulator Kelch-like ECH associated protein 1 (Keap1) control the expression of nearly 500 genes with diverse cytoprotective functions. Keap1, a substrate adaptor protein for Cullin3/Rbx1 ubiquitin ligase, normally continuously targets Nrf2 for degradation, but loses this ability in response to electrophiles and oxidants (termed inducers). Consequently, Nrf2 accumulates and activates transcription of its downstream target genes. Many inducers are phytochemicals, and cruciferous vegetables represent one of the richest sources of inducer activity among the most commonly used edible plants. Here we summarize the discovery of the isothiocyanate sulforaphane as a potent inducer which reacts with cysteine sensors of Keap1, leading to activation of Nrf2. We then describe the development of a quantitative Förster resonance energy transfer (FRET)-based methodology combined with multiphoton fluorescence lifetime imaging microscopy (FLIM) to investigate the interactions between Keap1 and Nrf2 in single live cells, and the effect of sulforaphane, and other cysteine-reactive inducers, on the dynamics of the Keap1–Nrf2 protein complex. We present the experimental evidence for the “cyclic sequential attachment and regeneration” or “conformation cycling” model of Keap1-mediated Nrf2 degradation. Finally, we discuss the implications of this mode of regulation of Nrf2 for achieving a fine balance under normal physiological conditions, and the consequences and mechanisms of disrupting this balance for tumor biology

Identification of a TPX2-Like Microtubule-Associated Protein in Drosophila

Chromosome segregation during mitosis and meiosis relies on the spindle and the functions of numerous microtubule-associated proteins (MAPs). One of the best-studied spindle MAPs is the highly conserved TPX2, which has been reported to have characteristic intracellular dynamics and molecular activities, such as nuclear localisation in interphase, poleward movement in the metaphase spindle, microtubule nucleation, microtubule stabilisation, microtubule bundling, Aurora A kinase activation, kinesin-5 binding, and kinesin-12 recruitment. This protein has been shown to be essential for spindle formation in every cell type analysed so far. However, as yet, TPX2 homologues have not been found in the Drosophila genome. In this study, I found that the Drosophila protein Ssp1/Mei-38 has significant homology to TPX2. Sequence conservation was limited to the putative spindle microtubule-associated region of TPX2, and intriguingly, D-TPX2 (Ssp1/Mei-38) lacks Aurora A- and kinesin-5-binding domains, which are highly conserved in other animal and plant species, including many insects such as ants and bees. D-TPX2 uniformly localised to kinetochore microtubule-enriched regions of the metaphase spindle in the S2 cell line, and it had microtubule binding and bundling activities in vitro. In comparison with other systems, the contribution of D-TPX2 to cell division seems to be minor; live cell imaging of microtubules and chromosomes after RNAi knockdown identified significant delay in chromosome congression in only 18% of the cells. Thus, while this conserved spindle protein is present in Drosophila, other mechanisms may largely compensate for its spindle assembly and chromosome segregation functions