Synchronization and Control in Intrinsic and Designed Computation: An Information-Theoretic Analysis of Competing Models of Stochastic Computation

We adapt tools from information theory to analyze how an observer comes to synchronize with the hidden states of a finitary, stationary stochastic process. We show that synchronization is determined by both the process's internal organization and by an observer's model of it. We analyze these components using the convergence of state-block and block-state entropies, comparing them to the previously known convergence properties of the Shannon block entropy. Along the way, we introduce a hierarchy of information quantifiers as derivatives and integrals of these entropies, which parallels a similar hierarchy introduced for block entropy. We also draw out the duality between synchronization properties and a process's controllability. The tools lead to a new classification of a process's alternative representations in terms of minimality, synchronizability, and unifilarity.Comment: 25 pages, 13 figures, 1 tabl

Magnetic light

In this paper we report on the observation of novel and highly unusual magnetic state of light. It appears that in small holes light quanta behave as small magnets so that light propagation through such holes may be affected by magnetic field. When arrays of such holes are made, magnetic light of the individual holes forms novel and highly unusual two-dimensional magnetic light material. Magnetic light may soon become a great new tool for quantum communication and computing.Comment: Submitted to Phys.Rev.Lett., 3 figure

T. brucei cathepsin-L increases arrhythmogenic sarcoplasmic reticulum-mediated calcium release in rat cardiomyocytes

Aims: African trypanosomiasis, caused by Trypanosoma brucei species, leads to both neurological and cardiac dysfunction and can be fatal if untreated. While the neurological-related pathogenesis is well studied, the cardiac pathogenesis remains unknown. The current study exposed isolated ventricular cardiomyocytes and adult rat hearts to T. brucei to test whether trypanosomes can alter cardiac function independent of a systemic inflammatory/immune response. Methods and results: Using confocal imaging, T. brucei and T. brucei culture media (supernatant) caused an increased frequency of arrhythmogenic spontaneous diastolic sarcoplasmic reticulum (SR)-mediated Ca2+ release (Ca2+ waves) in isolated adult rat ventricular cardiomyocytes. Studies utilising inhibitors, recombinant protein and RNAi all demonstrated that this altered SR function was due to T. brucei cathepsin-L (TbCatL). Separate experiments revealed that TbCatL induced a 10–15% increase of SERCA activity but reduced SR Ca2+ content, suggesting a concomitant increased SR-mediated Ca2+ leak. This conclusion was supported by data demonstrating that TbCatL increased Ca2+ wave frequency. These effects were abolished by autocamtide-2-related inhibitory peptide, highlighting a role for CaMKII in the TbCatL action on SR function. Isolated Langendorff perfused whole heart experiments confirmed that supernatant caused an increased number of arrhythmic events. Conclusion: These data demonstrate for the first time that African trypanosomes alter cardiac function independent of a systemic immune response, via a mechanism involving extracellular cathepsin-L-mediated changes in SR function

Mimesis stories: composing new nature music for the shakuhachi

Nature is a widespread theme in much new music for the shakuhachi (Japanese bamboo flute). This article explores the significance of such music within the contemporary shakuhachi scene, as the instrument travels internationally and so becomes rooted in landscapes outside Japan, taking on the voices of new creatures and natural phenomena. The article tells the stories of five compositions and one arrangement by non-Japanese composers, first to credit composers’ varied and personal responses to this common concern and, second, to discern broad, culturally syncretic traditions of nature mimesis and other, more abstract, ideas about the naturalness of sounds and creative processes (which I call musical naturalism). Setting these personal stories and longer histories side by side reveals that composition creates composers (as much as the other way around). Thus it hints at much broader terrain: the refashioning of human nature at the confluence between cosmopolitan cultural circulations and contemporary encounters with the more-than-human world

Monitoring under ice phyto- and zooplankton blooms with the Nereid Under Ice remotely operated vehicle

The perennially ice-covered Central Arctic is changing rapidly due to extensive sea-ice retreat and the loss of multiyear ice. The thinning of the ice allows more light to reach the water column enhancing productivity. These changes in the under ice ecosystem can lead to under-ice phytoplankton blooms which may increase grazing and carbon export. However, our knowledge of the interactions between sea ice, sub-ice and under-ice communities is still poor, especially in high latitudes. A key limitation is observations of the undisturbed under-ice flora and fauna. To address this gap in observations, the Nereid Under Ice remotely operated vehicle (NUI) was developed, equipped with thin optical fibre and acoustic navigation to explore under-ice environments at distances up to 20 km away from research vessels from which it is deployed. This vehicle can accommodate various interdisciplinary payloads including HD video cameras, CTD and biological sensor packages including chlorophyll fluorometers, CDOM optical sensors and optical nitrate sensors. Research capabilities of NUI were tested during the RV Polarstern PS86 expedition to the Aurora Vent field, at 83ºN 6°W north-east of Greenland. From 12 to 30 July 2014 the evolution of a phytoplankton bloom below 2m thick multiyear ice was followed. Video footage obtained with NUI directly below the ice showed the development of algal mats at the bottom of the ice floe and a succession of zooplankton blooms presumably causing a decline of the phytoplankton bloom. Polar copepods, ctenophores and appendicularia could be identified forming dense biomasses underneath the ice. From NUI’s chlorophyll, CDOM and nitrate profiles, steep gradients of high biogeochemical activity were detected in the mixed layer (upper 6-15 m), which could not be observed by the ship-deployed CTD. These structures were identified as layers of sinking particles with different optical characteristics. This poster summarizes the advantages of robotic observations over classical ship-based sampling for the study of under ice communities. In vivo observations of phyto- and zooplankton communities are needed to better assess the impacts of changing sea-ice conditions on under ice organisms

Validation of a New Predictive Risk Model: Measuring the Impact of the Major Modifiable Risks of Death for Patients and Populations

Background: Modifiable risks account for a large fraction of disease and death, but clinicians and patients lack tools to identify high risk populations or compare the possible benefit of different interventions. Methods: We used data on the distribution of exposure to 12 major behavioral and biometric risk factors inthe US population, mortality rates by cause, and estimates of the proportional hazards of risk factor exposure from published systematic reviews to develop a risk prediction model that estimates an adult\u27s 10 year mortality risk compared to a population with optimum risk factors. We compared predicted risk to observed mortality in 8,241 respondents in NHANES 1988-1994 and NHANES 1999-2004 with linked mortality data up to the end of 2006

Metabolomic Profiling of Bile Acids in Clinical and Experimental Samples of Alzheimer’s Disease

Certain endogenous bile acids have been proposed as potential therapies for ameliorating Alzheimer’s disease (AD) but their role, if any, in the pathophysiology of this disease is not currently known. Given recent evidence of bile acids having protective and anti-inflammatory effects on the brain, it is important to establish how AD affects levels of endogenous bile acids. Using LC-MS/MS, this study profiled 22 bile acids in brain extracts and blood plasma from AD patients (n = 10) and age-matched control subjects (n = 10). In addition, we also profiled brain/plasma samples from APP/PS1 and WT mice (aged 6 and 12 months). In human plasma, we detected significantly lower cholic acid (CA, p = 0.03) in AD patients than age-matched control subjects. In APP/PS1 mouse plasma we detected higher CA (p = 0.05, 6 months) and lower hyodeoxycholic acid (p = 0.04, 12 months) than WT. In human brain with AD pathology (Braak stages V-VI) taurocholic acid (TCA) were significantly lower (p = 0.01) than age-matched control subjects. In APP/PS1 mice we detected higher brain lithocholic acid (p = 0.05) and lower tauromuricholic acid (TMCA; p = 0.05, 6 months). TMCA was also decreased (p = 0.002) in 12-month-old APP/PS1 mice along with 5 other acids: CA (p = 0.02), β-muricholic acid (p = 0.02), Ω-muricholic acid (p = 0.05), TCA (p = 0.04), and tauroursodeoxycholic acid (p = 0.02). The levels of bile acids are clearly disturbed during the development of AD pathology and, since some bile acids are being proposed as potential AD therapeutics, we demonstrate a method that can be used to support work to advance bile acid therapeutics

An Assessment of Current Fan Noise Prediction Capability

In this paper, the results of an extensive assessment exercise carried out to establish the current state of the art for predicting fan noise at NASA are presented. Representative codes in the empirical, analytical, and computational categories were exercised and assessed against a set of benchmark acoustic data obtained from wind tunnel tests of three model scale fans. The chosen codes were ANOPP, representing an empirical capability, RSI, representing an analytical capability, and LINFLUX, representing a computational aeroacoustics capability. The selected benchmark fans cover a wide range of fan pressure ratios and fan tip speeds, and are representative of modern turbofan engine designs. The assessment results indicate that the ANOPP code can predict fan noise spectrum to within 4 dB of the measurement uncertainty band on a third-octave basis for the low and moderate tip speed fans except at extreme aft emission angles. The RSI code can predict fan broadband noise spectrum to within 1.5 dB of experimental uncertainty band provided the rotor-only contribution is taken into account. The LINFLUX code can predict interaction tone power levels to within experimental uncertainties at low and moderate fan tip speeds, but could deviate by as much as 6.5 dB outside the experimental uncertainty band at the highest tip speeds in some case

Spatial and temporal variability in recruitment of intertidal mussels around the coast of southern Africa

Intensity of intertidal mussel recruitment was compared across a range of different spatial and temporal scales around the coast of southern Africa between June 1995 and October 1996. Comparison of the east and west coasts revealed significantly higher recruit densities on the west coast, corresponding to larger adult densities. This difference between the two coasts reflects biogeographic disparities in mussel species composition, growth rates and spawning intensities, oceanographic conditions and productivity. Significant spatial variations in recruitment were recorded between regions 100–1000 km apart and between localities 1–25 km apart. Results suggest that the influence of dispersal processes on recruitment patterns acts at a relatively small scale, and may affect the distribution and abundance of adults among shores only a few kilometres apart. The high variability in recruitment intensities at a scale of metres indicates that larva! supply to the shore may be locally patchy, or that settlement preferences of recruits may be sensitive to subtle small-scale differences in adult density within mussel clumps. Small-scale differences in post-settlement mortality (e.g. owing to patchy predation pressure) may also play a role. This small-scale variability in recruitment is likely to reinforce the mosaic distribution of mussels evident on many of the shores. Significant temporal variability in recruit density was recorded, both between 3-monthly sampling intervals and interannually. Seasonal differences were absent for the north-west regions, whereas asynchronous seasonal patterns were displayed in the other regions. Results suggest that temporal cycles of recruitment are irregular and episodic, which may have important consequences for the dynamics of adults. Significant positive correlations were obtained between maximal recruitment and adult abundance, measured by density, or total number of adults on the shore (stock). This could be explained by the density-dependent role of adult conspecifics in providing suitable settlement habitat, or supply-side recruit limitation. These results have important implications for the management of exploited populations of mussels around the coast of southern Africa. Exploitation may influence recruitment success via at least two processes: reduction of larval supply by depletion of adult stock, and alteration of habitat suitable for settlement. Thus, overexploitation will compromise recruitment, which is itself the only mechanism of recovery. The west-coast mussel populations are likely to be more resilient to exploitation as recruitment is more predictable over time, stocks are larger and recruitment intensities high. This brings into question the present regulations for mussel harvesting because, paradoxically, more lenient regulations are applied on the east coast, where stocks and recruitment are low, than on the west coast, where biomass, recruitment and potential for recovery are high

Evaluation of an alternative spectroscopic approach for aflatoxin analysis: Comparative analysis of food and feed samples with UPLC-MS/MS

Increasing research has highlighted the effects of changing climates on the occurrence and prevalence of toxigenic Aspergillus species producing aflatoxins. There is concern of the toxicological effects to human health and animal productivity following acute and chronic exposure that may affect the future ability to provide safe and sufficient food globally. Considerable research has focused on the detection of these toxins, based on the physicochemical and biochemical properties of the aflatoxin compounds, in agricultural products for human and animal consumption. As improvements in food security continue more regulations for acceptable levels of aflatoxins have arisen globally; the most stringent in Europe. These regulations are important for developing countries as aflatoxin occurrence is high significantly effecting international trade and the economy. In developed countries analytical approaches have become highly sophisticated, capable of attaining results with high precision and accuracy, suitable for regulatory laboratories. Regrettably, many countries that are affected by aflatoxin contamination do not have resources for high tech HPLC and MS instrumentation and require more affordable, yet robust equally accurate alternatives that may be used by producers, processors and traders in emerging economies. It is especially important that those companies wishing to exploit the opportunities offered by lucrative but highly regulated markets in the developed world, have access to analytical methods that will ensure that their exports meet their customers quality and safety requirements. This work evaluates the ToxiMet system as an alternative approach to UPLC–MS/MS for the detection and determination of aflatoxins relative to current European regulatory standards. Four commodities: rice grain, maize cracked and flour, peanut paste and dried distillers grains were analysed for natural aflatoxin contamination. For B1 and total aflatoxins determination the qualitative correlation, above or below the regulatory limit, was good for all commodities with the exception of the dried distillers grain samples for B1 for which no calibration existed. For B1 the quantitative R2 correlations were 0.92, 0.92, 0.88 (<250 μg/kg) and 0.7 for rice, maize, peanuts and dried distillers grain samples respectively whereas for total aflatoxins the quantitative correlation was 0.92, 0.94, 0.88 and 0.91. The ToxiMet system could be used as an alternative for aflatoxin analysis for current legislation but some consideration should be given to aflatoxin M1 regulatory levels for these commodities considering the high levels detected in this study especially for maize and peanuts. (Résumé d'auteur