Modeling anisotropic diffusion using a departure from isotropy approach

There are a large number of finite volume solvers available for solution of isotropic diffusion equation. This article presents an approach of adapting these solvers to solve anisotropic diffusion equations. The formulation works by decomposing the diffusive flux into a component associated with isotropic diffusion and another component associated with departure from isotropic diffusion. This results in an isotropic diffusion equation with additional terms to account for the anisotropic effect. These additional terms are treated using a deferred correction approach and coupled via an iterative procedure. The presented approach is validated against various diffusion problems in anisotropic media with known analytical or numerical solutions. Although demonstrated for two-dimensional problems, extension of the present approach to three-dimensional problems is straight forward. Other than the finite volume method, this approach can be applied to any discretization method

Identification of dynamic displacements and modal frequencies of amedium-span suspension bridge using multimode GNSS processing

Global Navigation Satellite System (GNSS) positioning technology has been employed in the dynamic monitoring of long-span bridges in the recent years. However, it has difficulties to meet the higher accuracy requirements of the dynamic monitoring of small or medium span bridges, due to the presence of measurement noise from multipath, cycle slips, ionosphere delay, orbital errors, etc. To verify the feasibility of using current GNSS technology to monitor these bridges, a series of monitoring experiments have been carried out on the Wilford suspension bridge in Nottingham (UK) with GNSS and a triaxial accelerometer. Three GNSS data processing modes, i.e. Real-Time Kinematic (RTK), network RTK and Post-Processing Kinematic (PPK), were considered. An innovative multimode adaptive filtering (MAF) that combining adaptive filter with Chebyshev highpass filter was used to identify the dynamic displacements of the bridge from the multimode GNSS data. To validate the GNSS results, the dynamic displacements were also computed from double integration of the accelerometer-measured accelerations. The differences of the displacements between the GNSS and accelerometer results were obtained. The standard deviation and the mean deviation of these differences are less than 1 mm, which is good enough for the monitoring purposes. The modal frequencies of the bridge can be accurately identified from GNSS measurements, and successfully validated by those from the accelerometer data. Using the multimode GNSS data and the proposed the MAF algorithm, with sub-millimeter level accuracy GNSS can be used to monitor the vibration response of small or medium span bridges as well as long-span bridges

Carbon-fiber tips for scanning probe microscopes and molecular electronics experiments

We fabricate and characterize carbon-fiber tips for their use in combined scanning tunneling and force microscopy based on piezoelectric quartz tuning fork force sensors. An electrochemical fabrication procedure to etch the tips is used to yield reproducible sub-100-nm apex. We also study electron transport through single-molecule junctions formed by a single octanethiol molecule bonded by the thiol anchoring group to a gold electrode and linked to a carbon tip by the methyl group. We observe the presence of conductance plateaus during the stretching of the molecular bridge, which is the signature of the formation of a molecular junction.Comment: Conference Proceeding (Trends in NanoTechnology 2011, Tenerife SPAIN); Nanoscale Research Letters, (2012) 7:25

Decreased MCM2-6 in Drosophila S2 cells does not generate significant DNA damage or cause a marked increase in sensitivity to replication interference.

A reduction in the level of some MCM proteins in human cancer cells (MCM5 in U20S cells or MCM3 in Hela cells) causes a rapid increase in the level of DNA damage under normal conditions of cell proliferation and a loss of viability when the cells are subjected to replication interference. Here we show that Drosophila S2 cells do not appear to show the same degree of sensitivity to MCM2-6 reduction. Under normal cell growth conditions a reduction of >95% in the levels of MCM3, 5, and 6 causes no significant short term alteration in the parameters of DNA replication or increase in DNA damage. MCM depleted cells challenged with HU do show a decrease in the density of replication forks compared to cells with normal levels of MCM proteins, but this produces no consistent change in the levels of DNA damage observed. In contrast a comparable reduction of MCM7 levels has marked effects on viability, replication parameters and DNA damage in the absence of HU treatment

Physiological processes of inflammation and edema initiated by sustained mechanical loading in subcutaneous tissues : a scoping review

Deep tissue injuries are pressure ulcers which initiate in the subcutaneous tissues and extend through a bottom-up pathway. Once deep tissue injuries are visual at skin level, serious irreversible tissue damage has already occurred. In pressure ulcer development, inflammation and edema are coupled physiological processes associated with tissue damage arising due to sustained mechanical loading. This study aimed to provide an in-depth overview of the physiological processes of inflammation and edema initiated by sustained mechanical loading in subcutaneous tissues, in the context of pressure ulceration. A scoping review was performed according to the framework by Arksey and O'Malley. The databases MEDLINE, EMBASE, Web of Science, and Scopus, and the reference lists of included studies were searched for in vivo (animal, human), and in vitro studies matching the study objectives (from inception to 28 May 2018). No restrictions for inclusion were applied for study design, setting, participants, and year of publication. A total of 12 studies were included, varying in study design, sample characteristics, amount and duration of mechanical loads that were applied, follow-up time, and assessment methods. Neutrophil infiltration and edema occur in the subcutaneous tissues nearly immediately after the application of load on soft tissues. The amount of neutrophils and edema increase in the first days after the mechanical insult and decrease once healing has been initiated and no supplementary mechanical load was applied. One study indicated that edema may extend up to the level of the dermo-epidermal junction. Further research should focus on how deep tissue inflammation and edema are reflected into unique tissue changes at skin level, and how abnormal inflammatory responses manifest (e.g. when the nervous system is not functioning normally)

A unique role of GATA1S in down syndrome acute megakaryocytic leukemia biology and therapy

Background: Acute megakaryocytic leukemia (AMkL) in Down syndrome (DS) children is uniformly associated with somatic GATA1 mutations, which result in the synthesis of a shorter protein (GATA1s) with altered transactivation activity compared to the wild-type GATA1. It is not fully established whether leukemogenesis and therapeutic responses in DS AMkL patients are due to loss of the wild-type GATA1 or due to a unique function of GATA1s. Methodology: Stable clones of CMK cells with decreased GATA1s or Bcl-2 levels were generated by using GATA1- or BCL-2-specific lentivirus shRNAs. In vitro ara-C, daunorubicin, and VP-16 cytotoxicities of the shRNA stable clones were determined by using the Cell Titer-blue reagent. Apoptosis and cell cycle distribution were determined by flow cytometry analysis. Changes in gene transcript levels were determined by gene expression microarray and/or real-time RT-PCR. Changes in protein levels were measured by Western blotting. In vivo binding of GATA1s to IL1A promoter was determined by chromatin immunoprecipitation assays. Results: Lentivirus shRNA knockdown of the GATA1 gene in the DS AMkL cell line, CMK (harbors a mutated GATA1 gene and only expresses GATA1s), resulting in lower GATA1s protein levels, promoted cell differentiation towards the megakaryocytic lineage and repressed cell proliferation. Increased basal apoptosis and sensitivities to ara-C, daunorubicin, and VP-16 accompanied by down-regulated Bcl-2 were also detected in the CMK GATA1 shRNA knockdown clones. Essentially the same results were obtained when Bcl-2 was knocked down with lentivirus shRNA in CMK cells. Besides Bcl-2, down-regulation of GATA1s also resulted in altered expression of genes (e.g., IL1A, PF4, and TUBB1) related to cell death, proliferation, and differentiation. Conclusion: Our results suggest that GATA1s may facilitate leukemogenesis and potentially impact therapeutic responses in DS AMkL by promoting proliferation and survival, and by repressing megakaryocytic lineage differentiation, potentially by regulating expression of Bcl-2 protein and other relevant genes. © 2011 Xavier et al

Foraging distribution of breeding northern fulmars is predicted by commercial fisheries

Acknowledgements. J.H.D. was funded by the Irish Re- search Council Enterprise Partnership Scheme, supported by the Petroleum Infrastructure Program. Field work on Lit- tle Saltee in 2018 and 2019 and S.d.G. were funded by the BlueFish project, funded by the European Regional Devel- opment fund through the Ireland Wales Co-operation Pro- gramme 2014−2020. Fieldwork on Eynhallow and St. Kilda was supported by Orkney Islands Council, the University of Aberdeen, the National Trust for Scotland and Talisman Energy (UK) Ltd. E.W.J.E. was funded by a Marine Alliance for Science and Technology for Scotland and University of Aberdeen studentship. Fieldwork elsewhere was funded by the EU Atlantic area INTERREG program via the Future of the Atlantic Marine Environment (FAME) project and by the RSPB, JNCC, Fair Isle Bird Observatory Trust and Marine Scotland, through the Seabird Tracking And Research (STAR) project. We are grateful for field assistance from Ash Bennison, Cian Luck, Yvan Satge, Juliet Lamb, Chris Bell, Mara Nydegger, Robert Hughes, Elizabeth Mackley, Richard Bufton, Jenni Border, Derren Fox, Tegan Newman, Daisy Burnell, Antoine Grissott and Chris Taylor. Marine Scotland Science and the Marine Institute provided access to anony- mized VMS data. G.E.A. was funded by the MarPAMM pro- ject supported by the EU INTERREG VA Programme, man- aged by the Special EU Programmes Body (SEUPB). The views and opinions expressed in this manuscript do not nec- essarily reflect those of the European Commission or the SEUPB. Go raibh míle maith agaibh, Pat and Liezel of Little Saltee for their outstanding support and hospitality.Peer reviewedPublisher PD

Long term geological record of a global deep subsurface microbial habitat in sand injection complexes

Peer reviewedPublisher PD

Alpha-particle-induced complex chromosome exchanges transmitted through extra-thymic lymphopoiesis in vitro show evidence of emerging genomic instability

Human exposure to high-linear energy transfer α-particles includes environmental (e.g. radon gas and its decay progeny), medical (e.g. radiopharmaceuticals) and occupational (nuclear industry) sources. The associated health risks of α-particle exposure for lung cancer are well documented however the risk estimates for leukaemia remain uncertain. To further our understanding of α-particle effects in target cells for leukaemogenesis and also to seek general markers of individual exposure to α-particles, this study assessed the transmission of chromosomal damage initially-induced in human haemopoietic stem and progenitor cells after exposure to high-LET α-particles. Cells surviving exposure were differentiated into mature T-cells by extra-thymic T-cell differentiation in vitro. Multiplex fluorescence in situ hybridisation (M-FISH) analysis of naïve T-cell populations showed the occurrence of stable (clonal) complex chromosome aberrations consistent with those that are characteristically induced in spherical cells by the traversal of a single α-particle track. Additionally, complex chromosome exchanges were observed in the progeny of irradiated mature T-cell populations. In addition to this, newly arising de novo chromosome aberrations were detected in cells which possessed clonal markers of α-particle exposure and also in cells which did not show any evidence of previous exposure, suggesting ongoing genomic instability in these populations. Our findings support the usefulness and reliability of employing complex chromosome exchanges as indicators of past or ongoing exposure to high-LET radiation and demonstrate the potential applicability to evaluate health risks associated with α-particle exposure.This work was supported by the Department of Health, UK. Contract RRX95 (RMA NSDTG)