Optimising fisheries management in relation to tuna catches in the western central Pacific Ocean: A review of research priorities and opportunities

Some of the most important development goals for the countries and territories of the Western and Central Pacific Ocean (WCPO) involve the sustainable management of their fisheries in light of environmental, economic and social uncertainties. The responses of fish populations to variability in the marine environment have implications for decision making processes associated with resource management. There is still considerable uncertainty in estimating the responses of tuna populations to short-to-medium-term variability and longer-term change in the oceanic environment. A workshop was organised to examine how advances in oceanography, fisheries science and fisheries economics could be applied to the tuna fisheries of the WCPO and in doing so identify research priorities to improve understanding relevant to progressing management. Research priorities identified included: (i) improved parameterisation of end to end ecosystem model components, processes and feedbacks through expanded biological observations and incorporation of higher resolution climate models; (ii) development of seasonal and inter-annual forecasting tools enabling management responses to short-term variability in tuna distributions and abundances; (iii) improved understanding of the population dynamics of and the energy transfer efficiencies between food web components; (iv) assessment of the optimal value of access rights and overall fishery value under multiple scenarios of tuna distribution and abundance and influences on decision making by fisheries managers and fleets and (v) development of management strategy evaluation frameworks for utilisation in the implementing and testing of fishery management procedures and to help prioritise research directions and investment. Issues discussed and research priorities identified during the workshop have synergies with other internationally managed fisheries and therefore are applicable to many other fisheries

Integrating Teaching and Research in Undergraduate Biology Laboratory Education

A course recently designed and implemented at Stanford University applies practical suggestions for creating research-based undergraduate courses that benefit both teaching and research

Large Mesopelagic Fishes Biomass and Trophic Efficiency in the Open Ocean

With a current estimate of B1,000 million tons, mesopelagic fishes likely dominate the world total fishes biomass. However, recent acoustic observations show that mesopelagic fishes biomass could be significantly larger than the current estimate. Here we combine modelling and a sensitivity analysis of the acoustic observations from the Malaspina 2010 Circumnavigation Expedition to show that the previous estimate needs to be revised to at least one order of magnitude higher. We show that there is a close relationship between the open ocean fishes biomass and primary production, and that the energy transfer efficiency from phytoplankton to mesopelagic fishes in the open ocean is higher than what is typically assumed. Our results indicate that the role of mesopelagic fishes in oceanic ecosystems and global ocean biogeochemical cycles needs to be revised as they may be respiring B10% of the primary production in deep water

Distribution and diel vertical movements of mesopelagic scattering layers in the Red Sea

© The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Biology 159 (2012): 1833-1841, doi:10.1007/s00227-012-1973-y.The mesopelagic zone of the Red Sea represents an extreme environment due to low food concentrations, high temperatures and low oxygen waters. Nevertheless, a 38 kHz echosounder identified at least four distinct scattering layers during the daytime, of which the 2 deepest layers resided entirely within the mesopelagic zone. Two of the acoustic layers were found above a mesopelagic oxygen minimum zone (OMZ), one layer overlapped with the OMZ, and one layer was found below the OMZ. Almost all organisms in the deep layers migrated to the near-surface waters during the night. Backscatter from a 300 kHz lowered Acoustic Doppler Current Profiler indicated a layer of zooplankton within the OMZ. They carried out DVM, yet a portion remained at mesopelagic depths during the night. Our acoustic measurements showed that the bulk of the acoustic backscatter was restricted to waters shallower than 800 m, suggesting that most of the biomass in the Red Sea resides above this depth.This research is based in part on work supported by Award Nos. USA 00002, KSA 00011 and KSA 00011/02 made by KAUST to the Woods Hole Oceanographic Institution

The relationship among oceanography, prey fields, and beaked whale foraging habitat in the Tongue of the Ocean

This article is distributed under the terms of the Creative Commons CC0 public domain dedication. The definitive version was published in PLoS One 6 (2011): e19269, doi:10.1371/journal.pone.0019269.Beaked whales, specifically Blainville's (Mesoplodon densirostris) and Cuvier's (Ziphius cavirostris), are known to feed in the Tongue of the Ocean, Bahamas. These whales can be reliably detected and often localized within the Atlantic Undersea Test and Evaluation Center (AUTEC) acoustic sensor system. The AUTEC range is a regularly spaced bottom mounted hydrophone array covering >350 nm2 providing a valuable network to record anthropogenic noise and marine mammal vocalizations. Assessments of the potential risks of noise exposure to beaked whales have historically occurred in the absence of information about the physical and biological environments in which these animals are distributed. In the fall of 2008, we used a downward looking 38 kHz SIMRAD EK60 echosounder to measure prey scattering layers concurrent with fine scale turbulence measurements from an autonomous turbulence profiler. Using an 8 km, 4-leaf clover sampling pattern, we completed a total of 7.5 repeat surveys with concurrently measured physical and biological oceanographic parameters, so as to examine the spatiotemporal scales and relationships among turbulence levels, biological scattering layers, and beaked whale foraging activity. We found a strong correlation among increased prey density and ocean vertical structure relative to increased click densities. Understanding the habitats of these whales and their utilization patterns will improve future models of beaked whale habitat as well as allowing more comprehensive assessments of exposure risk to anthropogenic sound.The data collection and analysis was funded by the Office of Naval Research as N00014-08-1-1162

Large scale patterns in vertical distribution and behavior of mesopelagic scattering layers

Recent studies suggest that previous estimates of mesopelagic biomasses are severely biased, with the new, higher estimates underlining the need to unveil behaviourally mediated coupling between shallow and deep ocean habitats. We analysed vertical distribution and diel vertical migration (DVM) of mesopelagic acoustic scattering layers (SLs) recorded at 38 kHz across oceanographic regimes encountered during the circumglobal Malaspina expedition. Mesopelagic SLs were observed in all areas covered, but vertical distributions and DVM patterns varied markedly. The distribution of mesopelagic backscatter was deepest in the southern Indian Ocean (weighted mean daytime depth: WMD 590 m) and shallowest at the oxygen minimum zone in the eastern Pacific (WMD 350 m). DVM was evident in all areas covered, on average ~50% of mesopelagic backscatter made daily excursions from mesopelagic depths to shallow waters. There were marked differences in migrating proportions between the regions, ranging from ~20% in the Indian Ocean to ~90% in the Eastern Pacific. Overall the data suggest strong spatial gradients in mesopelagic DVM patterns, with implied ecological and biogeochemical consequences. Our results suggest that parts of this spatial variability can be explained by horizontal patterns in physical-chemical properties of water masses, such as oxygen, temperature and turbidity.En prensa2,927

The Effect of a Paired Lab on Course Completion and Grades in Nonmajors Introductory Biology

This paper explores the effect of a paired lab course on students’ course outcomes in nonmajors introductory biology at the University of Alaska Anchorage. We compare course completion and final grades for 10,793 students (3736 who simultaneously enrolled in the lab and 7057 who did not). Unconditionally, students who self-select into the lab are more likely to complete the course and to earn a higher grade than students who do not. However, when we condition on observable course, academic, and demographic characteristics, we find much of this difference in student performance outcomes is attributable to selection bias, rather than an effect of the lab itself. The data and discussion challenge the misconception that labs serve as recitations for lecture content, noting that the learning objectives of science labs should be more clearly articulated and assessed independent of lecture course outcomes. This paper explores the effect of a paired lab course on students’ course outcomes in introductory biology for nonmajors at the University of Alaska Anchorage (UAA), a large, open-enrollment, 4-year university. We compare outcomes for 10,793 students, 3736 who simultaneously enrolled in the lab and 7057 who did not, and analyze the degree to which they select into the lab on observable characteristics to explore the following research questions: 1. Are students who take a paired lab more likely to complete the lecture component (i.e., receive a final grade as opposed to withdrawing or receiving an Incomplete)? 2. Are students who take a paired lab more likely to receive a higher grade in the lecture component? 3. Does the laboratory experience differently affect course outcomes for students in specific demographic subgroups (e.g., gender, race, high school urbanicity, age, prior academic performance, and socioeconomic status)

Improved estimates of orange roughy biomass using an acoustic-optical system in commercial trawlnets

© 2016 International Council for the Exploration of the Sea. All rights reserved.Echo integration is a well-established method for estimating fish biomass, but is challenging for a low target strength (TS), deep-living fish species such as orange roughy (Hoplostethus atlanticus). A novel approach has been to utilize the infrastructure of the fishing vessel's trawlnet by attaching an acoustic-optical system (AOS) to the net's headline. Deep deployment of the AOS via the trawlnet reduces uncertainties associated with hull-mounted acoustics that include the influence of weather on data quality, low resolution due to the long range to target, large acoustic dead zone on sloping seabed, and inability to identify and differentiate other fish that co-occur with the target species. The AOS system simultaneously records acoustic data at multiple frequencies (38 and 120 kHz), species composition in video and stereo imagery, and environmental data as the net collects biological samples and/or commercial catch. All data streams were considered in a multiple-lines-of-evidence approach to give improved estimates of orange roughy biomass with low error due to species uncertainty. AOS-based biomass estimates, made over a 5-year period from 11 key spawning locations in Australia and New Zealand, showed a strong correlation (r2 = 0.97, n = 39) between frequencies (38 and 120 kHz); the 38 kHz estimates were, on average, 8% higher than 120 kHz, with a standard deviation of 20%. This similarity in estimates across frequencies improves confidence in results compared with single-frequency surveys that are potentially prone to large errors resulting from unknown (mixed) species composition and target strengths, calibration, and sound absorption uncertainties

In situ target strength estimates of visually verified orange roughy

The first estimates of orange roughy (Hoplostethus atlanticus) target strength at 38 and 120 kHz with visual verification were obtained from a self-contained echosounder and video camera system affixed to a demersal trawl towed through dense aggregations of spawning orange roughy. Mean target strength estimates were obtained from 24 tracks of orange roughy containing 83 echoes. The mean target strength at 38 kHz was -52.0 dB with a 95% confidence interval of -53.3 to -50.9 dB for fish with a mean length of 33.9 cm. At 120 kHz the mean target strength was -47.9 dB (confidence interval of -48.8 to -46.4 dB). This work makes two significant advances: in situ TS measurements have been made that can be confidently attributed to orange roughy, and using a trawl to herd orange roughy past the system resolved the previously intractable problem of fish avoidance. © 2012 International Council for the Exploration of the Sea

Deep-scattering layer, gas-bladder density, and size estimates using a two-frequency acoustic and optical probe

© 2016 International Council for the Exploration of the Sea. All rights reserved.Estimating the biomass of gas-bladdered organisms in the mesopelagic ocean is a simple first step to understanding ecosystem structure. An existing two-frequency (38 and 120 kHz) acoustic and optical probe was lowered to 950 m to estimate the number and size of gas-bladders. In situ target strengths from 38 and 120 kHz and their difference were compared with those of a gas-bladder resonance-scattering model. Predicted mean equivalent spherical radius gas-bladder size varied with depth, ranging from 2.1 mm (shallow) to 0.6 mm (deep). Density of night-time organisms varied throughout the water column and were highest (0.019 m-3) in the 200-300 m depth range. Predictions of 38 kHz volume-backscattering strength (Sv) from the density of gas-bladdered organisms could explain 88% of the vessel's 38 kHz Sv at this location (S 40.9, E 166.7). Catch retained by trawls highlighted the presence of gas-bladdered fish of a similar size range but different densities while optical measurements highlighted the depth distribution and biomass of gas-inclusion siphonophores. Organism behaviour and gear selectivity limits the validation of acoustic estimates. Simultaneous optical verification of multifrequency or broadband acoustic targets at depth are required to verify the species, their size and biomass