Transport and Deposition of Saharan Dust Observed from Satellite Images and Ground Measurements

Haboob occurrence strongly impacts the annual variability of airborne desert dust in North Africa. In fact, more dust is raised from erodible surfaces in the early summer (monsoon) season when deep convective storms are common but soil moisture and vegetation cover are low. On 27 June 2018, a large dust storm is initiated over North Africa associated with an intensive westward dust transport. Far away from emission sources, dust is transported over the Atlantic for the long distance. Dust plume is emitted by a strong surface wind and further becomes a type of haboob when it merges with the southwestward deep convective system in central Mali at 0200 UTC (27 June). We use satellite observations to describe and estimate the dust mass concentration during the event. Approximately 93% of emitted dust is removed the dry deposition from the atmosphere between sources (10°N–25°N; 1°W–8°E) and the African coast (6°N–21°N; 16°W–10°W). The convective cold pool has induced large economic and healthy damages, and death of animals in the northeastern side of Senegal. ERA5 reanalysis has shown that the convective mesoscale impacts strongly the climatological location of the Saharan heat low (SHL)

Tropical Data: Approach and Methodology as Applied to Trachoma Prevalence Surveys

PURPOSE: Population-based prevalence surveys are essential for decision-making on interventions to achieve trachoma elimination as a public health problem. This paper outlines the methodologies of Tropical Data, which supports work to undertake those surveys. METHODS: Tropical Data is a consortium of partners that supports health ministries worldwide to conduct globally standardised prevalence surveys that conform to World Health Organization recommendations. Founding principles are health ministry ownership, partnership and collaboration, and quality assurance and quality control at every step of the survey process. Support covers survey planning, survey design, training, electronic data collection and fieldwork, and data management, analysis and dissemination. Methods are adapted to meet local context and needs. Customisations, operational research and integration of other diseases into routine trachoma surveys have also been supported. RESULTS: Between 29th February 2016 and 24th April 2023, 3373 trachoma surveys across 50 countries have been supported, resulting in 10,818,502 people being examined for trachoma. CONCLUSION: This health ministry-led, standardised approach, with support from the start to the end of the survey process, has helped all trachoma elimination stakeholders to know where interventions are needed, where interventions can be stopped, and when elimination as a public health problem has been achieved. Flexibility to meet specific country contexts, adaptation to changes in global guidance and adjustments in response to user feedback have facilitated innovation in evidence-based methodologies, and supported health ministries to strive for global disease control targets

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Analysis of Strengthening and Dissipating Mesoscale Convective Systems Propagating off the West African Coast

International audienceA large number of Atlantic tropical depressions are generated in the eastern basin in relation to the African easterly wave (AEW) and embedded mesoscale convective systems (MCSs) coming from the African continent. In this paper, the structures of strengthening and dissipating MCSs evolving near the West African coast are analyzed, including the role of the ocean surface conditions in their evolution.Satellite infrared brightness temperature and meteorological radar data over seven summer seasons between 1993 and 2006 are used to subjectively select 20 cases of strengthening and dissipating MCSs in the vicinity of the Senegal coast. With these observed MCSs, a lagged composite analysis is then performed using Interim ECMWF Re-Analysis (ERA-Interim) and Climate Forecast System Reanalysis (CFSR).It is shown that the strengthening MCS is generally preceded by prior passage of an AEW near the West African coast. This previous wave trough is associated with a convective cyclonic circulation in the low and middle troposphere, which enhances the southwesterly flow and then provides humidity to the strengthening MCS, located in the vicinity of the subsequent AEW trough. This is favored by the contraction of the wavelength associated with the two troughs. The sea surface contributes to the MCS enhancement through surface evaporation flux. But this contribution is found to be less important than advection of humidity from the previous wave trough. These conditions are almost not found in the dissipating MCS cases, which dissipate in a dry environment dominated by a subsident and anticyclonic circulation, with generally no interaction with a previous wave trough

Trains of African Easterly Waves and Their Relationship to Tropical Cyclone Genesis in the Eastern Atlantic

International audienceIn this study, the relationship between trains of African easterly waves (AEWs) and downstream tropical cyclogenesis is studied. Based on 19 summer seasons (July-September from 1990 to 2008) of ERA-Interim reanalysis fields and brightness temperature from the Cloud User Archive, the signature of AEW troughs and embedded convection are tracked from the West African coast to the central Atlantic. The tracked systems are separated into four groups: (i) systems originating from the north zone of the midtropospheric African easterly jet (AEJ), (ii) those coming from the south part of AEJ, (iii) systems that are associated with a downstream trough located around 2000 km westward (termed DUO systems), and (iv) those that are not associated with such a close downstream trough (termed SOLO systems). By monitoring the embedded 700-hPa-filtered relative vorticity and 850-hPa wind convergence anomaly associated with these families along their trajectories, it is shown that the DUO generally have stronger dynamical structure and statistically have a longer lifetime than the SOLO ones. It is suggested that the differences between them may be due to the presence of the previous intense downstream trough in DUO cases, enhancing the low-level convergence behind them. Moreover, a study of the relationship between system trajectories and tropical depressions occurring between the West African coast and 408W showed that 90% of tropical depressions are identifiable from the West African coast in tracked systems, mostly in the DUO cases originating from the south zone of the AEJ

Formation and Transport of a Saharan Dust Plume in Early Summer

This research studies the capability of the Weather Research and Forecasting model coupled with the Chemistry/Aerosol module (WRF-Chem) with and without parametrization to reproduce a dust storm, which was held on 27th June 2018 over Sahara region. The authors use satellite observations and ground-based measurements to evaluate the WRF-Chem simulations. The sensitivities of WRF-Chem Model are tested on the replication of haboob features with a tuned GOCART aerosol module. Comparisons of simulations with satellite and ground-based observations show that WRF-Chem is able to reproduce the Aerosol Optical Depth (AOD) distribution and associated changes of haboob in the meteorological fields with temperature drops of about 9 °C and wind gust 20 m·s–1. The WRF-Chem Convection-permitting model (CPM) shows strong 10-meter winds induced a large dust emission along the leading edge of a convective cold pool (LECCP). The CPM indicates heavy dust transported over the West African coast (16°W-10°W; 6°N-21°N) which has a potential for long-distance travel on 27th June between 1100 UTC and 1500 UTC. The daily precipitation is improved in the CPM with a spatial distribution similar to the GPM-IMERG precipitation and maximum rainfall located at the right place. As well as raising a large amount of dust, the haboob caused considerable damage along its route

Tropical Data: Approach and Methodology as Applied to Trachoma Prevalence Surveys

Population-based prevalence surveys are essential for decision-making on interventions to achieve trachoma elimination as a public health problem. This paper outlines the methodologies of Tropical Data, which supports work to undertake those surveys. Tropical Data is a consortium of partners that supports health ministries worldwide to conduct globally standardised prevalence surveys that conform to World Health Organization recommendations. Founding principles are health ministry ownership, partnership and collaboration, and quality assurance and quality control at every step of the survey process. Support covers survey planning, survey design, training, electronic data collection and fieldwork, and data management, analysis and dissemination. Methods are adapted to meet local context and needs. Customisations, operational research and integration of other diseases into routine trachoma surveys have also been supported. Between 29 February 2016 and 24 April 2023, 3373 trachoma surveys across 50 countries have been supported, resulting in 10,818,502 people being examined for trachoma. This health ministry-led, standardised approach, with support from the start to the end of the survey process, has helped all trachoma elimination stakeholders to know where interventions are needed, where interventions can be stopped, and when elimination as a public health problem has been achieved. Flexibility to meet specific country contexts, adaptation to changes in global guidance and adjustments in response to user feedback have facilitated innovation in evidence-based methodologies, and supported health ministries to strive for global disease control targets

Tropical Data: Approach and Methodology as Applied to Trachoma Prevalence Surveys

Population-based prevalence surveys are essential for decision-making on interventions to achieve trachoma elimination as a public health problem. This paper outlines the methodologies of Tropical Data, which supports work to undertake those surveys. Tropical Data is a consortium of partners that supports health ministries worldwide to conduct globally standardised prevalence surveys that conform to World Health Organization recommendations. Founding principles are health ministry ownership, partnership and collaboration, and quality assurance and quality control at every step of the survey process. Support covers survey planning, survey design, training, electronic data collection and fieldwork, and data management, analysis and dissemination. Methods are adapted to meet local context and needs. Customisations, operational research and integration of other diseases into routine trachoma surveys have also been supported. Between 29th February 2016 and 24th April 2023, 3373 trachoma surveys across 50 countries have been supported, resulting in 10,818,502 people being examined for trachoma. This health ministry-led, standardised approach, with support from the start to the end of the survey process, has helped all trachoma elimination stakeholders to know where interventions are needed, where interventions can be stopped, and when elimination as a public health problem has been achieved. Flexibility to meet specific country contexts, adaptation to changes in global guidance and adjustments in response to user feedback have facilitated innovation in evidence-based methodologies, and supported health ministries to strive for global disease control targets.</p