Rogue waves of the Sasa-Satsuma equation in a chaotic wave field

We study the properties of the chaotic wave fields generated in the frame of the Sasa-Satsuma equation (SSE). Modulation instability results in a chaotic pattern of small-scale filaments with a free parameter - the propagation constant k. The average velocity of the filaments is approximately given by the group velocity calculated from the dispersion relation for the plane-wave solution. Remarkably, our results reveal the reason for the skewed profile of the exact SSE rogue-wave solutions, which was one of their distinctive unexplained features. We have also calculated the probability density functions for various values of the propagation constant k, showing that probability of appearance of rogue waves depends on k

Celtic FC’s 1967 Lisbon Lions:Why the European Cup victory of the first club from Britain was a defining moment for the Irish diaspora in Scotland

In 1967, in Lisbon, Celtic Football Club, won the European Cup becoming the first club outside of Portugal, Spain and Italy to win it. The win was and is totemic for the Irish Catholic immigrant community in Scotland that has historically supported Celtic. We suggest the significance of the win reveals intersections of ethnicity, religion, nationalism, and the politics of ‘sectarianism’ in Scotland. During a period of discriminatory practices and attitudes towards Irish descended Catholics in Scotland, this iconic win for a Scottish based club born of Irish Catholics personified for this diaspora that (on one level) their day had arrived. This article explores the socio-cultural significance and legacy of ‘Lisbon 67ʹ for insider and outsider groups in Scotland. We reveal that soccer remains a central component of group memory connecting the past, present and future. We suggest Celtic’s win offered confidence and hope to a marginalized group within Scotland

Ty1 insertions in intergenic regions of the genome of Saccharomyces cerevisiae transcribed by RNA polymerase III have no detectable selective effect

The retrotransposon Ty1 of Saccharomyces cerevisiae inserts preferentially into intergenic regions in the vicinity of RNA polymerase III-transcribed genes. It has been suggested that this preference has evolved to minimize the deleterious effects of element transposition on the host genome, and thus to favor their evolutionary survival. This presupposes that such insertions have no selective effect. However, there has been no direct test of this hypothesis. Here we construct a series of strains containing single Ty1 insertions in the vicinity of tRNA genes, or in the rDNA cluster on chromosome XII, which are otherwise isogenic to strain 337, containing zero Ty1 elements. Competition experiments between 337 and the strains containing single Ty1 insertions revealed that in all cases, the Ty1 insertions have no selective effect in rich medium. These results are thus consistent with the hypothesis that the insertion site preference of Ty1 elements has evolved to minimize the deleterious effects of transposition on the host genome.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72266/1/S1567-1356_03_00199-5.pd

'An outsider in our midst': narratives of Neil Lennon, soccer and ethno-religious igotry in the Scottish press

This essay offers a critique of media narratives concerning soccer and those of 'difference' in contemporary Scotland, in particular those who have Irishness as their different identity. It examines certain newspaper narratives concerning Neil Lennon of Celtic FC during autumn 2005. During this period Lennon was characterized as a soccer villain. The commentaries drew on existing perceptions concerning his personality and style of play. More importantly Lennon's national identity (Irish) and his religious background (Catholic) were integrated into the narratives, marking him as an outsider in Scotland. These narratives resonate with public and private discourses of 'otherness' concerning the Irish Catholic diaspora community in Scotland. These broader discourses are manifest as ethno-religious prejudices directed against this community. The discourses of 'outsider' and 'otherness' that surround Lennon, Celtic FC and the Irish Catholic community expose the myth of Scotland's collective self-image as an egalitarian and inclusive society

Association between Fruit and Vegetable Intakes and Mental Health in the Australian Diabetes Obesity and Lifestyle Cohort

Increasing prevalence of mental health disorders within the Australian population is a serious public health issue. Adequate intake of fruits and vegetables (FV), dietary fibre (DF) and resistant starch (RS) is associated with better mental and physical health. Few longitudinal studies exist exploring the temporal relationship. Using a validated food frequency questionnaire, we examined baseline FV intakes of 5845 Australian adults from the AusDiab study and estimated food group-derived DF and RS using data from the literature. Perceived mental health was assessed at baseline and 5 year follow up using SF-36 mental component summary scores (MCS). We conducted baseline cross-sectional analysis and prospective analysis of baseline dietary intake with perceived mental health at 5 years. Higher baseline FV and FV-derived DF and RS intakes were associated with better 5 year MCS (p < 0.001). A higher FV intake (754 g/d vs. 251 g/d, Q4 vs. Q1) at baseline had 41% lower odds (OR = 0.59: 95% CI 0.46–0.75) of MCS below population average (<47) at 5 year follow up. Findings were similar for FV-derived DF and RS. An inverse association was observed with discretionary food-derived DF and RS. This demonstrates the association between higher intakes of FV and FV-derived DF and RS with better 5 year mental health outcomes. Further RCTs are necessary to understand mechanisms that underlie this association including elucidation of causal effects

First evidence of concurrent enzootic and endemic transmission of Ross River virus in the absence of marsupial reservoirs in Fiji

BACKGROUND:Ross River virus (RRV) is a zoonotic alphavirus transmitted by several mosquito species. Until recently, endemic transmission was only considered possible in the presence of marsupial reservoirs. METHODS:We investigated RRV seroprevalence in placental mammals, including horses, cows, goats, pigs, dogs, rats, and mice in Fiji, where there are no marsupials. A total of 302 vertebrate serum samples were collected from 86 households from 10 communities in Western Fiji. FINDINGS:Neutralizing antibodies against RRV were detected in 28 to 100% of sera depending on species, and neutralization was strong even at high dilutions. SIGNIFICANCE:Our results are unlikely to be due to cross reactions; Chikungunya is the only other alphavirus known to be present in the Pacific Islands, but it rarely spills over into non-humans, even during epidemics. Our findings, together with recent report of high RRV seroprevalence in humans, strongly suggest that RRV is circulating in Fiji in the absence of marsupial reservoirs. Considering that all non-human vertebrates present in Fiji are panglobal in distribution, RRV has the potential to further expand its geographic range. Further surveillance and access to diagnostics of RRV is critical for the early detection of emergence and outbreaks.Eri Togami, Narayan Gyawali, Oselyne Ong, Mike Kama, Van-Mai Cao-Lormeau ... Philip Weinsteini ... et al

RCW 49 at mid-infrared wavelengths: A glimpse from the Spitzer Space Telescope

The luminous, massive star formation region RCW 49, located in the southern Galactic plane, was imaged with the Infrared Array Camera (IRAC) on the Spitzer Space Telescope as part of the Galactic Legacy Infrared Mid-Plane Survey Extraordinaire (GLIMPSE) program. The IRAC bands contain polycyclic aromatic hydrocarbon (PAH) features at 3.3, 6.2, 7.7, and 8.6 μm, as well as the Brα line. These features are the major contributors to the diffuse emission from RCW 49 in the IRAC bands. The Spitzer IRAC images show that the dust in RCW 49 is distributed in a network of fine filaments, pillars, knots, sharply defined boundaries, bubbles, and bow shocks. The regions immediately surrounding the ionizing star cluster and W-R stars are evacuated of dust by stellar winds and radiation. The IRAC images of RCW 49 suggest that the dust in RCW 49 has been sculpted by the winds and radiation from the embedded luminous stars in the inner 5′ (inner ∼6 pc) of the nebula. At projected angular radii φ > 5′ from the central ionizing cluster, the azimuthally averaged infrared intensity falls off as ∼φ-3. Both high-resolution radio and mid-IR images suggest that the nebula is density bounded along its western boundary. The filamentary structure of the dust in RCW 49 suggests that the nebula has a small dust filling factor and, as a consequence, the entire nebula may be slightly density bounded to H-ionizing photons

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

Identification of main-sequence stars with mid-infrared excesses using glimpse: β pictoris analogs?

Spitzer IRAC 3.6-8 μm photometry obtained as part of the GLIMPSE survey has revealed mid-infrared excesses for 33 field stars with known spectral types in a 1.2 deg2 field centered on the southern Galactic H II region RCW 49. These stars comprise a subset of 184 stars with known spectral classification, most of which were preselected to have unusually red IR colors. We propose that the mid-IR excesses are caused by circumstellar dust disks that are either very late remnants of stellar formation or debris disks generated by planet formation. Of these 33 stars, 29 appear to be main-sequence stars on the basis of optical spectral classifications. Five of the 29 main-sequence stars are O or B stars with excesses that can be plausibly explained by thermal bremsstrahlung emission, and four are post-main-sequence stars. The lone O star is an O4 V((f)) at a spectrophotometric distance of 3233-535 +540 pc and may be the earliest member of the Westerlund 2 cluster. Of the remaining 24 main-sequence stars, 18 have spectral energy distributions that are consistent with hot dusty debris disks, a possible signature of planet formation. Modeling the excesses as blackbodies demonstrates that the blackbody components have fractional bolometric disk-to-star luminosity ratios, L IR/L*, ranging from 10-3 to 10-2 with temperatures ranging from 220 to 820 K. The inferred temperatures are more consistent with asteroid belts than with the cooler temperatures expected for Kuiper belts. Mid-IR excesses are found in all spectral types from late B to early K

The micromorphology of glaciolacustrine varve sediments and their use for reconstructing palaeoglaciological and palaeoenvironmental change

Former glaciolacustrine systems are an important archive of palaeoglaciological, palaeoenvironmental and palaeoclimatic change. The annually laminated (varved) sediments that, under certain conditions, accumulate in former glacial lakes, offer a rare opportunity to reconstruct such changes (e.g. glacier advance and retreat cycles, glacier ablation trends, permafrost melt, nival events) at annual or even sub-annual temporal resolution. Data of this kind are desirable for their ability to guide and test numerical model simulations of glacier dynamics and palaeoclimatic change that occur over rapid time intervals, with implications for predicting future glacier response to climatic change, or the effects of weather and climate events on lake sedimentation. The most valuable records preserved in glaciolacustrine systems are continuous varved sequences formed in the distal parts of glacial lakes, where microscale lamination structures can accumulate relatively undisturbed. Technological advances, in the last few decades, have enabled improved characterisation of glaciolacustrine varve microfacies and the precise measurement of varve thickness at the micrometre scale. However, unlike in cognate fields (e.g. soil science), protocols for the robust and consistent description and interpretation of glaciolacustrine varve sediments are lacking. To fill this gap, and to provide a resource for future studies of glaciolacustrine varved sediments, this paper reviews the processes of sedimentation in glacial lake basins, and presents the defining microfacies characteristics of glacial varves using a descriptive protocol that uses consistent examination of grain size, sorting, structure, nature of contacts, development of plasmic fabrics and features such as dropgrains and intraclasts within individual laminations. These lamination types are then combined into lamination sets, whose structures can be interpreted as glaciolacustrine varves. Within this framework, we define five principal assemblages of glaciolacustrine varve microfacies which, if clearly identified in palaeoglaciolacustrine settings, enable more detailed palaeoenvironmental interpretations to be made. Finally, we discuss the utility and complexities of reconstructing the evolution of former glacial lake systems using varve microfacies and thickness datasets