Accurate and rapid antibiotic susceptibility testing using a machine learning-assisted nanomotion technology platform.

Antimicrobial resistance (AMR) is a major public health threat, reducing treatment options for infected patients. AMR is promoted by a lack of access to rapid antibiotic susceptibility tests (ASTs). Accelerated ASTs can identify effective antibiotics for treatment in a timely and informed manner. We describe a rapid growth-independent phenotypic AST that uses a nanomotion technology platform to measure bacterial vibrations. Machine learning techniques are applied to analyze a large dataset encompassing 2762 individual nanomotion recordings from 1180 spiked positive blood culture samples covering 364 Escherichia coli and Klebsiella pneumoniae isolates exposed to cephalosporins and fluoroquinolones. The training performances of the different classification models achieve between 90.5 and 100% accuracy. Independent testing of the AST on 223 strains, including in clinical setting, correctly predict susceptibility and resistance with accuracies between 89.5% and 98.9%. The study shows the potential of this nanomotion platform for future bacterial phenotype delineation

Variation in Soil Respiration across Soil and Vegetation Types in an Alpine Valley.

BACKGROUND AND AIMS: Soils of mountain regions and their associated plant communities are highly diverse over short spatial scales due to the heterogeneity of geological substrates and highly dynamic geomorphic processes. The consequences of this heterogeneity for biogeochemical transfers, however, remain poorly documented. The objective of this study was to quantify the variability of soil-surface carbon dioxide efflux, known as soil respiration (Rs), across soil and vegetation types in an Alpine valley. To this aim, we measured Rs rates during the peak and late growing season (July-October) in 48 plots located in pastoral areas of a small valley of the Swiss Alps. FINDINGS: Four herbaceous vegetation types were identified, three corresponding to different stages of primary succession (Petasition paradoxi in pioneer conditions, Seslerion in more advanced stages and Poion alpinae replacing the climactic forests), as well as one (Rumicion alpinae) corresponding to eutrophic grasslands in intensively grazed areas. Soils were developed on calcareous alluvial and colluvial fan deposits and were classified into six types including three Fluvisols grades and three Cambisols grades. Plant and soil types had a high level of co-occurrence. The strongest predictor of Rs was soil temperature, yet we detected additional explanatory power of sampling month, showing that temporal variation was not entirely reducible to variations in temperature. Vegetation and soil types were also major determinants of Rs. During the warmest month (August), Rs rates varied by over a factor three between soil and vegetation types, ranging from 2.5 μmol m-2 s-1 in pioneer environments (Petasition on Very Young Fluvisols) to 8.5 μmol m-2 s-1 in differentiated soils supporting nitrophilous species (Rumicion on Calcaric Cambisols). CONCLUSIONS: Overall, this study provides quantitative estimates of spatial and temporal variability in Rs in the mountain environment, and demonstrates that estimations of soil carbon efflux at the watershed scale in complex geomorphic terrain have to account for soil and vegetation heterogeneity

The abundance, diversity, and metabolic footprint of soil nematodes is highest in high elevation alpine grasslands

info:eu-repo/semantics/publishedVersio

Naturalised Vitis Rootstocks in Europe and Consequences to Native Wild Grapevine

The genus Vitis is represented by several coexisting species in Europe. Our study focuses on naturalised rootstocks that originate in viticulture. The consequences of their presence to the landscape and to native European species (Vitis vinifera ssp. silvestris) are evaluated. This study compares ecological traits (seven qualitative and quantitative descriptors) and the genetic diversity (10 SSR markers) of populations of naturalised rootstocks and native wild grapevines. 18 large naturalised rootstock populations were studied in the Rhône watershed. Wild European grapevines are present in four main habitats (screes, alluvial forests, hedges, and streamside hedges). In contrast, naturalised rootstock populations are mainly located in alluvial forests, but they clearly take advantage of alluvial system dynamics and connectivity at the landscape level. These latter populations appear to reproduce sexually, and show a higher genetic diversity than Vitis vinifera ssp. silvestris. The regrouping of naturalised rootstocks in interconnected populations tends to create active hybrid swarms of rootstocks. The rootstocks show characters of invasive plants. The spread of naturalised rootstocks in the environment, the acceleration of the decline of the European wild grapevine, and the propagation of genes of viticultural interest in natural populations are potential consequences that should be kept in mind when undertaking appropriate management measures

Influence of microclimate and geomorphological factors on alpine vegetation in the Western Swiss Alps

Among the numerous environmental factors affecting plant communities in alpine ecosystems, the influence of geomorphic processes and landforms has been minimally investigated. Subjected to persistent climate warming, it is vital to understand how these factors affect vegetation properties. Here, we studied 72 vegetation plots across three sites located in the Western Swiss Alps, characterized by high geomorphological variability and plant diversity. For each plot, vascular plant species were inventoried and ground surface temperature, soil moisture, topographic variables, earth surface processes (ESPs) and landform morphodynamics were assessed. The relationships between plant communities and environmental variables were analysed using non-metric multidimensional scaling (NMDS) and multivariate regression techniques (generalized linear model, GLM, and generalized additive model, GAM). Landform morphodynamics, growing degree days (sum of degree days above 5°C) and mean ground surface temperature were the most important explanatory variables of plant community composition. Furthermore, the regression models for species cover and species richness were significantly improved by adding a morphodynamics variable. This study provides complementary support that landform morphodynamics is a key factor, combined with growing degree days, to explain alpine plant distribution and community composition

Quelques observations nouvelles ou intéressantes d'acridiens de Côte d'Ivoire (Orthoptera, Acridoidea)

Cet article relate les captures d'acridiens réalisées en différents points de la Côte d'Ivoire, depuis les dunes côtières jusqu'aux savanes soudaniennes, d'avril à juin 1986. La femelle de #Truxaloides checkei$ Popov, 1985 est décrite. 26 espèces sont signalées pour la première fois en Côte d'Ivoire. Ceci montre l'imperfection de nos connaissances, au moins dans la littérature, de cette faune, surtout pour ce qui concerne le nord du pays. (Résumé d'auteur