White Paper Series on Pandemic Response and Preparedness

White paper authored by three members of the National Security Commission on Artificial Intelligence to address AI-related aspects of the COVID-19 pandemic response and the implications of the crisis for America's security and strategic competitiveness. It offers five themed recommendations to use AI to reopen, assess, preserve, screen, and return the U.S.'s economic and national security concerns during and after the pandemic

First results of the SOAP project. Open access publishing in 2010

The SOAP (Study of Open Access Publishing) project has compiled data on the present offer for open access publishing in online peer-reviewed journals. Starting from the Directory of Open Access Journals, several sources of data are considered, including inspection of journal web site and direct inquiries within the publishing industry. Several results are derived and discussed, together with their correlations: the number of open access journals and articles; their subject area; the starting date of open access journals; the size and business models of open access publishers; the licensing models; the presence of an impact factor; the uptake of hybrid open access.Comment: Submitted to PLoS ON

Updating the Antarctic krill biomass estimates for CCAMLR Subareas 48.1 to 48.4 using available data

-We present a novel index of Antarctic krill biomass in CCAMLR subareas 48.1 to 48.4, based on data from scientific nets and covering the years between 2000 and 2011. The annual biomass variation was significant (CV=73%) but no systematic change in krill biomass was evident during the period. The index also suggests that realised exploitation rates were below 0.5% (i.e. catch was <0.5% of biomass) and that the potential exploitation rates implied by the operational catch limit (the trigger level) were below 2% during this period. These exploitation rates are much lower than the precautionary yield estimate for the krill fishery (which is 9.3%). Biomass indices from local scale acoustic surveys also suggest that exploitation rates are low and that there is no evidence of a systematic change in the krill stock. This evidence suggests that the trigger level is a highly precautionary operational catch limit which is currently appropriate for achieving the conservation criteria for the krill stock. It also suggests that the catch levels seen in the first decade of the 21st century are unlikely to have adversely impacted the krill stock. Nonetheless the Commission also needs to manage the risk of adverse impacts on dependent and related populations which might occur if fishing is concentrated in sensitive areas. Advances are needed to improve management of krill fisheries to manage these risks and to ensure that management is robust to the potential impacts of climate change. We suggest that frequent assessment of the krill stock, at scales relevant to the Commission’s conservation objectives, is a prerequisite for such advances. The most effective means to achieve this is likely to be through increased use of fishing vessels to collect data, while maintaining current time serie

Highlights from the SOAP project survey. What Scientists Think about Open Access Publishing

The SOAP (Study of Open Access Publishing) project has run a large-scale survey of the attitudes of researchers on, and the experiences with, open access publishing. Around forty thousands answers were collected across disciplines and around the world, showing an overwhelming support for the idea of open access, while highlighting funding and (perceived) quality as the main barriers to publishing in open access journals. This article serves as an introduction to the survey and presents this and other highlights from a preliminary analysis of the survey responses. To allow a maximal re-use of the information collected by this survey, the data are hereby released under a CC0 waiver, so to allow libraries, publishers, funding agencies and academics to further analyse risks and opportunities, drivers and barriers, in the transition to open access publishing.Comment: Data manual available at http://bit.ly/gI8nct Compressed CSV data file available at http://bit.ly/gSmm71 Alternative data formats: CSV http://bit.ly/ejuvKO XLS http://bit.ly/e6gE7o XLSX http://bit.ly/gTjyv

Distribution of Vulnerable Marine Ecosystems at the South Sandwich Islands: Results From the Blue Belt Discovery Expedition 99 Deep-Water Camera Surveys

The South Sandwich Islands (SSI) are a chain of volcanic islands located to the east of the Scotia Sea, approximately 700 km south-east of South Georgia. To date, knowledge of the SSI benthic environment remains limited. In this context, the Blue Belt Programme conducted a scientific survey in the SSI Marine Protected Area (MPA) during February/March 2019 to examine the biodiversity and distribution of benthic communities and their potential vulnerability to licensed longline research fisheries. Here we report results from analysis of multibeam echosounder (MBES) data and drop camera imagery data collected in selected locations around the SSI. A total of eight vulnerable marine ecosystem (VME) indicator morphotaxa were mapped along the slopes of the SSI, showing a substantial variation in taxon composition and frequency of occurrence, both along bathymetric and latitudinal gradients. Our results suggest that VME indicator taxa are mostly restricted to waters shallower than 700 m. As such, based on our present understanding of the region’s benthic environment the MPA, as currently established, offers effective protection for the majority of the VME indicator taxa

Delivering clinical studies of exercise in the COVID-19 pandemic: challenges and adaptations using a feasibility trial of isometric exercise to treat hypertension as an exemplar.

The COVID-19 pandemic has significantly impacted on the delivery of clinical trials in the UK, posing complicated organisational challenges and requiring adaptations, especially to exercise intervention studies based in the community. We aim to identify the challenges of public involvement, recruitment, consent, follow-up, intervention and the healthcare professional delivery aspects of a feasibility study of exercise in hypertensive primary care patients during the COVID-19 pandemic. While these challenges elicited many reactive changes which were specific to, and only relevant in the context of 'lockdown' requirements, some of the protocol developments that came about during this unprecedented period have great potential to inform more permanent practices for carrying out this type of research. To this end, we detail the necessary adaptations to many elements of the feasibility study and critically reflect on our approach to redesigning and amending this ongoing project in order to maintain its viability to date. Some of the more major protocol adaptations, such as moving the study to remote means wherever possible, had further unforeseen and undesirable outcomes (eg, additional appointments) with regards to extra resources required to deliver the study. However, other changes improved the efficiency of the study, such as the remote informed consent and the direct advertising with prescreening survey. The adaptations to the study have clear links to the UK Plan for the future of research delivery. It is intended that this specific documentation and critical evaluation will help those planning or delivering similar studies to do so in a more resource efficient and effective way. In conclusion, it is essential to reflect and respond with protocol changes in the current climate in order to deliver clinical research successfully, as in the case of this particular study. [Abstract copyright: © Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY. Published by BMJ.

Molecular characterization of the uncultivatable hemotropic bacterium Mycoplasma haemofelis

Mycoplasma haemofelis is a pathogenic feline hemoplasma. Despite its importance, little is known about its metabolic pathways or mechanism of pathogenicity due to it being uncultivatable. The recently sequenced M. haemofelis str. Langford 1 genome was analysed and compared to those of other available hemoplasma genomes

The effects of variability in bank material properties on riverbank stability: Goodwin Creek, Mississippi

Bank retreat is an important area of research within fluvial geomorphology and is a land management problem of global significance. The Yazoo River Basin in Mississippi is one example of a system which is experiencing excessive erosion and bank instability. The properties of bank materials are important in controlling the stability of stream banks and past studies have found that these properties are often variable spatially. Through an investigation of bank material properties on a stretch of Goodwin Creek in the Yazoo Basin, Mississippi, this study focuses on: i) how and why effective bank material properties vary through different scales; ii) how this variation impacts on the outputs from a bank stability model; and iii) how best to appropriately represent this variability within a bank stability model. The study demonstrates the importance that the variability of effective bank material properties has on bank stability: at both the micro-scale within a site, and at the meso-scale between sites in a reach. This variability was shown to have important implications for the usage of the Bank Stability and Toe Erosion Model (BSTEM), a deterministic bank stability model that currently uses a single value to describe each bank material property. As a result, a probabilistic representation of effective bank material strength parameters is recommended as a potential solution for any bank stability model that wishes to account for the important influence of the inherent variability of soil properties. © 2008 Elsevier B.V. All rights reserved

Feasibility study to assess the delivery of a novel isometric exercise intervention for people with stage 1 hypertension in the NHS: protocol for the IsoFIT-BP study including amendments to mitigate the risk of COVID-19.

BackgroundHypertension  (HTN) affects approximately 25% of the UK population and is a leading cause of mortality. Associated annual health care costs run into billions. National treatment guidance includes initial lifestyle advice, followed by anti-hypertensive medication if blood pressure (BP) remains high. However, adoption and adherence to recommended exercise guidelines, dietary advice and anti-hypertensive medication is poor. Four short bouts of isometric exercise (IE) performed 3 days per week (d/wk) at home elicits clinically significant reductions in BP in those with normal to high-normal BP. This study will determine the feasibility of delivering personalised IE to patients with stage 1 hypertension for whom lifestyle changes would be recommended before medication within NHS primary care.MethodsThis is a randomised controlled feasibility study. Participants were 18+ years, with stage 1 hypertension, not on anti-hypertensive medication and without significant medical contraindications. Trial arms will be standard lifestyle advice (control) or isometric wall squat exercise and standard lifestyle advice. Primary outcomes include the feasibility of healthcare professionals to deliver isometric exercise prescriptions in a primary care NHS setting and estimation of the variance of change in systolic BP. Secondary outcomes include accuracy of protocol delivery, execution of and adherence to protocol, recruitment rate, attrition, perception of intervention viability, cost, participant experience and accuracy of home BP. The study will last 18 months. Sample size of 100 participants (50 per arm) allows for 20% attrition and 6.5% incomplete data, based upon 74 (37 each arm) participants (two-sided 95% confidence interval, width of 1.33 and standard deviation of 4) completing 4 weeks. Ethical approval IRAS ID is 274676.DiscussionBefore the efficacy of this novel intervention to treat stage 1 hypertension can be investigated in any large randomised controlled trial, it is necessary to ascertain if it can be delivered and carried out in a NHS primary care setting. Findings could support IE viability as a prophylactic/alternative treatment option.Trial registrationISRCTN13472393 , registered 18 August 2020