Living on a trophic subsidy: Algal quality drives an upper-shore herbivore’s consumption, preference and absorption but not growth rates

Indexación: Scopus.The transfer of seaweeds from subtidal bottoms to nearby intertidal rocky shores is a common but often overlooked phenomenon. Freshly detached seaweeds often represent critical trophic subsidies for herbivores living in upper-shore rocky intertidal areas, such as the marine snail Diloma nigerrima. This species relies on three species of seaweeds for food and displays feeding strategies to deal with a resource that is scarce and at times unpredictable. This study focused on the nutritional quality of freshly detached algae (Durvillaea antarctica, Lessonia spicata and Lessonia trabeculata) and measured Diloma nigerrima’s algal consumption rates in trials with and without choice. Absorption efficiency and growth of individual snails fed on each alga were also measured. Durvillaea antarctica had the highest nutritional quality and was the most consumed algae in both single and multiple-choice trials. Absorption efficiency was also highest for D. antarctica but growth rates of snails fed with this species were similar to those fed with the other algae. Combined, these results suggest that D. nigerrima has the ability to discriminate among seaweeds based on their nutritional quality. A potential increase in oxygen uptake when D. nigerrima is consuming the preferred food item is also proposed as a plausible hypothesis to explain the mismatch between snails’ preference and growth rate. These results aim to guide further studies on trophic subsidies and their role in coastal systems. © 2018 Quintanilla-Ahumada et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.https://journals.plos.org/plosone/article?id=10.1371/journal.pone.019612

High pCO 2 levels affect metabolic rate, but not feeding behavior and fitness, of farmed giant mussel Choromytilus chorus

Indexación: Scopus.Acknowledgements. We thank Luisa Saavedra and Araceli Rodriguez-Romero for their help in the field and during laboratory activities. We also acknowledge Laura Ramajo for help with AT estimations. Emily Giles Neill provided valuable comments that greatly improved the manuscript. Special thanks are due to the reviewers and the editor for very constructive comments on the manuscript. This study was supported by the Millennium Nucleus Center for the Study of Multiple drivers on Marine Socio-Ecological Systems (MUSELS) funded by MINECON NC120086, PIA CONICYT ACT-172037 and FONDECYT grant nos. 1140938 and 1140092 to N.A.L. and M.A.L.Mar Ecol Prog Ser 454: 65−74 Findlay HS, Wood HL, Kendall MA, Spicer JI, Twitchett RJ, Widdicombe S (2009) Calcification, a physiological pro-cess to be considered in the context of the whole organ-ism. Biogeosciences 6: 2267−2284 Fitzer SC, Zhu W, Tanner KE, Phoenix VR, Kamenos NA, Cusack M (2015) Ocean acidification alters the material properties of Mytilus edulis shells. J R Soc Interface 12: 214−227 Freitas R, De Marchi L, Bastos M, Moreira A and others (2017) Effects of seawater acidification and salinity alter-ations on metabolic, osmoregulation and oxidative stress markers in Mytilus galloprovincialis. Ecol Indic 79: 54−62 Gattuso JP, Magnan A, Billé R, Cheung WWL and others (2015) Contrasting futures for ocean and society from dif-ferent anthropogenic CO2 emissions scenarios. Science 349: aac4722 Gazeau F, Urbini L, Cox TE, Alliouane S, Gattuso JP (2015) Comparison of the alkalinity and calcium anomaly tech-niques to estimate rates of net calcification. Mar Ecol Prog Ser 527: 1−12 Gray MW, Langdon CJ, Waldbusser GG, Hales B, Kramer S (2017) Mechanistic understanding of ocean acidification impacts on larval feeding physiology and energy budg-ets of the mussel Mytilus californianus. Mar Ecol Prog Ser 563: 81−94 Griffiths CL, Griffiths RJ (1987) Animal energetics, Vol 2: Bivalvia through Reptilia. In: Pandian TJ, Vernberg FJ (eds) Bivalvia. Academic Press, New York, NY, p 1−88 Harvey BP, Dwynn-Jones D, Moore PJ (2013) Meta-analysis reveals complex marine biological responses to the inter-active effects of ocean acidification and warming. Ecol Evol 3: 1016−1030 Hiebenthal C, Philipp EER, Eisenhauer A, Wahl M (2013) Effects of seawater pCO2 and temperature on shell growth, shell stability, condition and cellular stress of western Baltic Sea Mytilus edulis (L.) and Arctica is - landica (L.). Mar Biol 160: 2073−2087 Ibarrola I, Arambalza U, Navarro JM, Urrutia MB, Navarro E (2012) Allometric relationships in feeding and diges-tion in the Chilean mytilids Mytilus chilensis (Hupé), Choromytilus chorus (Molina) and Aulacomya ater (Mo - lina): a comparative study. J Exp Mar Biol Ecol 426-427: 18−27 Lagos NA, Benítez S, Duarte C, Lardies MA and others (2016) Effects of temperature and ocean acidification on shell characteristics of Argopecten purpuratus: implica-tions for scallop aquaculture in an upwelling-influenced area. Aquacult Environ Interact 8: 357−370 Lardies MA, Arias MB, Poupin MJ, Manríquez PH and oth-ers (2014) Differential response to ocean acidification in physiological traits of Concholepas concholepas popula-tions. J Sea Res 90: 127−134 Lardies MA, Benítez S, Osores S, Vargas CA, Duarte C, Lohrmann KB, Lagos NA (2017) Physiological and histo - pathological impacts of increased carbon dioxide and temperature on the scallops Argopecten purpuratus cultured under upwelling influences in northern Chile. Aquaculture 479: 455−466 Lemasson AJ, Fletcher S, Hall-Spencer JM, Knights AM (2017) Linking the biological impacts of ocean acidifica-tion on oysters to changes in ecosystem services: a review. J Exp Mar Biol Ecol 492: 49−62 Mackenzie CL, Ormondroyd GA, Curling SF, Ball RJ, Whitely NM, Malham SK (2014) Ocean warming, more than acidification, reduces shell strength in a commercial shellfish species during food limitation. PLOS ONE 9: e86764 McElhany P (2017) CO2 sensitivity experiments are not suf-ficient to show an effect of ocean acidification. ICES J Mar Sci 74: 926−928 Mehrbach C, Culberson CH, Hawley JE, Pytkowicz RM (1973) Measurement of the apparent dissociation con-stants of carbonic acid in seawater at atmospheric pres-sure. Limnol Oceanogr 18: 897−907 Melzner F, Thomsen J, Koeve W, Oschlies A and others (2013) Future ocean acidification will be amplified by hypoxia in coastal habitats. Mar Biol 160: 1875−1888 Michaelidis B, Ouzounis C, Paleras A, Pörtner HO (2005) Effects of long-term moderate hypercapnia on acid−base balance and growth rate in marine mussels Mytilus gal-loprovincialis. Mar Ecol Prog Ser 293: 109−118 Miller AW, Reynolds AC, Sobrino C, Riedel GF (2009) Shell-fish face uncertain future in high CO2 world: influence of acidification on oyster larvae calcification and growth in estuaries. PLOS ONE 4: e5661 Navarro JM (1988) The effects of salinity on the physio - logical ecology of Choromytilus chorus (Molina, 1782) (Bivalvia: Mytilidae). J Exp Mar Biol Ecol 122: 19−33 Navarro JM, Torres R, Acuña K, Duarte C and others (2013) Impact of medium-term exposure to elevated pCO2 lev-els on the physiological energetics of the mussel Mytilus chilensis. Chemosphere 90: 1242−1248 Navarro JM, Duarte C, Manríquez PH, Lardies MA and oth-ers (2016) Ocean warming and elevated carbon dioxide: multiple stressor impacts on juvenile mussels from south-ern Chile. ICES J Mar Sci 73: 764−771 Nienhuis S, Palmer AR, Harley CD (2010) Elevated CO2 affects shell dissolution rate but not calcification rate in a marine snail. Proc R Soc B 277: 2553−2558 Orr JC, Fabry VJ, Aumont O, Bopp L and others (2005) Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 437: 681−686 Osores SJ, Lagos NA, San Martin V, Manríquez PH and others (2017) Plasticity and inter-population variability in physiological and life-history traits of the mussel Mytilus chilensis: a reciprocal transplant experiment. J Exp Mar Biol Ecol 490: 1−12 Palmer AR (1982) Growth in marine gastropods: a non-destructive technique for independently measuring shell and body weight. Malacologia 23: 63−73 Parker LM, Ross PM, O’Connor WA, Borysko L, Raftos DA, Pörtner HO (2012) Adult exposure influences offspring response to ocean acidification in oysters. Glob Change Biol 18: 82−92 Pierrot D, Lewis E, Wallace DWR (2006) MS Excel program developed for CO2 system calculations. ORNL/CDIAC-105a. Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US Department of Energy, Oak Ridge, TN Ramajo L, Marba N, Prado L, Peron S and others (2016) Bio-mineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification. Glob Change Biol 22: 2025−2037 Range P, Chícharo MA, Ben-Hamadou R, Piló D and others (2014) Impacts of CO2-induced seawater acidification on coastal Mediterranean bivalves and interactions with other climatic stressors. Reg Environ Change 14(Suppl 1): 19−30 Sabine C, Feely RA, Gruber N, Key RM and others (2004) The oceanic sink of anthropogenic CO2. Science 305: 367–371 SERNAPESCA (Servicio Nacional de Pesca y Acuicultura) (2014) Anuarios estadísticos del Servicio Nacional de Pesca y Acuicultura. www.sernapesca.cl Solórzano L (1969) Determination of ammonia in natural waters by the phenolhypochlorite method. Limnol Oce - anogr 14: 799−801 Thomsen J, Melzner F (2010) Moderate seawater acidifica-tion does not elicit long-term metabolic depression in the blue mussel Mytilus edulis. Mar Biol 157: 2667−2676 Thomsen J, Casties I, Pansch C, Körtzinger A, Melzner F (2013) Food availability outweighs ocean acidification effects in juvenile Mytilus edulis: laboratory and field experiments. Glob Change Biol 19: 1017−1027 Thomsen J, Stapp LS, Haynert K, Schade H, Danelli M, Lannig G, Melzner F (2017) Naturally acidified habitat selects for ocean acidification-tolerant mussels. Sci Adv 3: e1602411 Toro B, Navarro JM, Palma-Fleming H (2003) Relationship between bioenergetics responses and organic pollutants in the giant mussel, Choromytilus chorus (Mollusca: Mytilidae). Aquat Toxicol 63: 257−269 Torres R, Pantoja S, Harada N, González HE, Daneri G, Frangopulos M, Fukasawa M (2011) Air-sea CO2 fluxes along the coast of Chile: from CO2 outgassing in central northern upwelling waters to CO2 uptake in southern Patagonian fjords. J Geophys Res 116: C09006 Torres R, Manriquez PH, Duarte C, Navarro JM, Lagos NA, Vargas CA, Lardies MA (2013) Evaluation of a semi - automatic system for long-term seawater carbonate chemistry manipulation. Rev Chil Hist Nat 86: 443−451 Vargas CA, Aguilera V, Martín V, Manríquez P and others (2015) CO2-driven ocean acidification disrupts the filter feeding behavior in Chilean gastropod and bivalve spe-cies from different geographic localities. Estuaries Coasts 38: 1163−1177 Vargas CA, Lagos NA, Lardies MA, Duarte C and others (2017) Species-specific responses to ocean acidification should account for local adaptation and adaptive plasti-city. Nature Ecol Evol 1: 0084 Vargas CA, Cuevas LA, Silva N, Gonzalez HE, Pol-Holz D, Narvaez DA (2018) Influence of glacier melting and river discharges on the nutrient distribution and DIC recycling in the southern Chilean Patagonia. J Geophys Res Bio-geosci 123: 256−270 Velasco LA, Navarro JM (2003) Energetic balance of infau-nal (Mulinia edulis King, 1831) and epifaunal (Mytilus chilensis Hupé, 1854) bivalves in response to wide varia-tions in concentration and quality of seston. J Exp Mar Biol Ecol 296: 79−92 Vihtakari M, Hendriks IE, Holding J, Renaud PE, Duarte CM, Havenhand JN (2013) Effects of ocean acidification and warming on sperm activity and early life stages of the Mediterranean mussel (Mytilus galloprovincialis). Water 5: 1890−1915 Wang Y, Li L, Hu M, Lu W (2015) Physiological energetic of the thick shell mussel Mytilus coruscus exposed to sea-water acidification and thermal stress. Sci Total Environ 514: 261−272 White MM, McCorkle DC, Mullineaux LS, Cohen AL (2013)Benthic habitats such as intertidal areas, sandy or rocky shores, upwelling zones, and estuaries are characterized by variable environmental conditions. This high variability of environmental stressors such as temperature, salinity, and pH/pCO 2 levels have been shown to impose restrictions on organismal performance. The giant mussel Choromytilus chorus forms intertidal and subtidal mussel beds in estuarine zones associated with fjords occurring in southern Chile and is an important aquacultural resource in Patagonia. In this study, we estimated the sensitivity of physiological traits and energy balance of C. chorus juveniles exposed to 3 pCO 2 treatments (500, 750, and 1200 μatm) for 30 d. Results showed that in acidified, high pCO 2 conditions, C. chorus juveniles had increased metabolic rates; however, other physiological traits (clearance and ingestion rates, ammonia excretion, absorption efficiency, growth rate, biomass production, net calcification, and dissolution rates) were not affected. These results suggest that when subjected to acidification, the adaptive response of C. chorus triggers tradeoffs among physiological traits that favor sustained feeding and growth in order to combat increased metabolic stress. As has been reported for other marine organisms, chronic exposure to variable pH/pCO 2 in their native habitats, such as estuarine zones, could explain the differential acclimatization capacity of giant mussels to cope with the increase in pCO 2 . Additionally, the fact that the mussels did not suffer from mortality indicates that increased pCO 2 levels may have chronic, but not lethal, effects on this species under these experimental conditions. © The authors 2017.https://www.int-res.com/abstracts/aei/v10/p267-278

Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.

Synthetic biologists increasingly rely on directed evolution to optimize engineered biological systems. Applying an appropriate screening or selection method for identifying the potentially rare library members with the desired properties is a crucial step for success in these experiments. Special challenges include substantial cell-to-cell variability and the requirement to check multiple states (e.g., being ON or OFF depending on the input). Here, we present a high-throughput screening method that addresses these challenges. First, we encapsulate single bacteria into microfluidic agarose gel beads. After incubation, they harbor monoclonal bacterial microcolonies (e.g., expressing a synthetic construct) and can be sorted according their fluorescence by fluorescence activated cell sorting (FACS). We determine enrichment rates and demonstrate that we can measure the average fluorescent signals of microcolonies containing phenotypically heterogeneous cells, obviating the problem of cell-to-cell variability. Finally, we apply this method to sort a pBAD promoter library at ON and OFF states

Discrete lot sizing and scheduling on parallel machines: description of a column generation approach

In this work, we study the discrete lot sizing and scheduling problem (DSLP) in identical parallel resources with (sequence-independent) setup costs and inventory holding costs. We propose a Dantzig-Wolfe decomposition of a known formulation and describe a branch-and-price and column generation procedure to solve the problem to optimality. Preliminary results show that the lower bounds provided by the reformulated model are stronger than the lower bounds provided by the linear programming relaxation of the original model

A column generation approach to the discrete lot sizing and scheduling problem on parallel machines

In this work, we study the discrete lot sizing and scheduling problem (DSLP) in identical parallel resources with (sequence-independent) setup costs and inventory holding costs. We propose a Dantzig-Wolfe decomposition of a known formulation and describe a branch-and-price and column generation procedure to solve the problem to optimality. The results show that the lower bounds provided by the reformulated model are stronger than the lower bounds provided by the linear programming (LP) relaxation of the original model.info:eu-repo/semantics/publishedVersio

Parallel machine scheduling using free software: an application

We will show how to implement large scale optimization by only using freely available software tools. We solve exactly a parallel machine scheduling problem with identical parallel machines and malleable tasks, subject to arbitrary release dates and due dates. The objective is to minimize a function of late work and setup costs. We use the COIN-OR BCP framework to implement column generation to solve a model that results from a Dantzig-Wolfe decomposition, and also CRIFOR MCFZIB to solve an equivalent network flow model. Computational results are presented

Solving a multiprocessor problem by column generation and branch-and-price

This work presents an algorithm for solving exactly a scheduling problem with identical parallel machines and malleable tasks, subject to arbitrary release dates and due dates. The objective is to minimize a function of late work and setup costs. A task is malleable if we can freely change the set of machines assigned to its processing over the time horizon. We present an integer programming model, a Dantzig-Wolfe decomposition reformulation and its solution by column generation. We also developed an equivalent network flow model, used for the branching phase. Finally, we carried out extensive computational tests to verify the algorithm’s efficiency and to determine the model’s sensitivity to instance size parameters: the number of machines, the number of tasks and the size of the planning horizon

Multiscale Partition of Unity

We introduce a new Partition of Unity Method for the numerical homogenization of elliptic partial differential equations with arbitrarily rough coefficients. We do not restrict to a particular ansatz space or the existence of a finite element mesh. The method modifies a given partition of unity such that optimal convergence is achieved independent of oscillation or discontinuities of the diffusion coefficient. The modification is based on an orthogonal decomposition of the solution space while preserving the partition of unity property. This precomputation involves the solution of independent problems on local subdomains of selectable size. We deduce quantitative error estimates for the method that account for the chosen amount of localization. Numerical experiments illustrate the high approximation properties even for 'cheap' parameter choices.Comment: Proceedings for Seventh International Workshop on Meshfree Methods for Partial Differential Equations, 18 pages, 3 figure

Source apportionment and Elemental Composition of Atmospheric total Suspended Particulates (TSP) Over the Red Sea Coast of Saudi Arabia

This work presents a comprehensive study on concentrations and elemental composition of total suspended atmospheric particulates for a semi-urban site on the Red Sea coast, and on-board a research vessel, which collected off-shore samples along the Red Sea. We conducted one of the most extended measurement campaigns of atmospheric particulates ever for the region, with continuous measurements over 27 months. The overall mean concentrations (± st. dev.) of TSP were 125 ± 197 µg m−3 for the permanent semi-urban site, and 108 ± 193 µg m−3 for the off-shore mobile site. The region is frequently severely impacted by both localised and widespread dust storms, which on occasion, can increase atmospheric particulate concentrations to levels above mg m−3 (> 1000 µg m−3). Median concentrations were not as variable between seasons, indicating a stable, permanent presence of atmospheric particulates independent of the time of year. The primary chemical elements contributing to particulate mass were Na, Ca, S, Al and Fe. We employed Positive Matrix Factorisation (EPA PMF v5.0.14) to identify different major sources of particulates, which were crustal, marine, fuel oil combustion/secondary sulphate and mixed anthropogenic. The crustal source was characterised by tracers Al, Fe, K, Mg and Sn, and was present to some extent in the other identified sources due to the permanent presence of dust particles in the atmosphere. The fuel oil combustion/secondary sulphate source was identifiable by the almost exclusive presence of S, and to a lesser extent V, emitted from oil combustion as primary emissions and also secondary sulphate formation following the release of S to the atmosphere. A mixed anthropogenic source was characterised by Zn, Ni, Cr, Cu and Pb, emitted from traffic, industry, power generation and water desalination. This study highlights that the natural sources of particulates in this desert region give rise to frequent episodes of extremely poor air quality, and this problem is compounded by significant emissions of anthropogenic pollution, which has an impact across the entire Red Sea basin. Further stringent measures should be adopted to improve air quality across the region and prevent long-term damage to the health of the local population and ecosystems.En prens

Refined Analysis of Brain Energy Metabolism Using In Vivo Dynamic Enrichment of 13C Multiplets.

Carbon-13 nuclear magnetic resonance spectroscopy in combination with the infusion of (13)C-labeled precursors is a unique approach to study in vivo brain energy metabolism. Incorporating the maximum information available from in vivo localized (13)C spectra is of importance to get broader knowledge on cerebral metabolic pathways. Metabolic rates can be quantitatively determined from the rate of (13)C incorporation into amino acid neurotransmitters such as glutamate and glutamine using suitable mathematical models. The time course of multiplets arising from (13)C-(13)C coupling between adjacent carbon atoms was expected to provide additional information for metabolic modeling leading to potential improvements in the estimation of metabolic parameters.The aim of the present study was to extend two-compartment neuronal/glial modeling to include dynamics of (13)C isotopomers available from fine structure multiplets in (13)C spectra of glutamate and glutamine measured in vivo in rats brain at 14.1 T, termed bonded cumomer approach. Incorporating the labeling time courses of (13)C multiplets of glutamate and glutamine resulted in elevated precision of the estimated fluxes in rat brain as well as reduced correlations between them