On the role of AGN feedback on the thermal and chemodynamical properties of the hot intra-cluster medium

We present an analysis of the properties of the ICM in an extended set of cosmological hydrodynamical simulations of galaxy clusters and groups performed with the TreePM+SPH GADGET-3 code. Besides a set of non-radiative simulations, we carried out two sets of simulations including radiative cooling, star formation, metal enrichment and feedback from supernovae, one of which also accounts for the effect of feedback from AGN resulting from gas accretion onto super-massive black holes. These simulations are analysed with the aim of studying the relative role played by SN and AGN feedback on the general properties of the diffuse hot baryons in galaxy clusters and groups: scaling relations, temperature, entropy and pressure radial profiles, and ICM chemical enrichment. We find that simulations including AGN feedback produce scaling relations that are in good agreement with X-ray observations at all mass scales. However, our simulations are not able to account for the observed diversity between CC and NCC clusters: unlike for observations, we find that temperature and entropy profiles of relaxed and unrelaxed clusters are quite similar and resemble more the observed behaviour of NCC clusters. As for the pattern of metal enrichment, we find that an enhanced level of iron abundance is produced by AGN feedback with respect to the case of purely SN feedback. As a result, while simulations including AGN produce values of iron abundance in groups in agreement with observations, they over-enrich the ICM in massive clusters. The efficiency of AGN feedback in displacing enriched gas from halos into the inter-galactic medium at high redshift also creates a widespread enrichment in the outskirts of clusters and produces profiles of iron abundance whose slope is in better agreement with observations.Comment: 23 pages, 14 figures, 1 table, accepted for publication in MNRA

T Cell Leukemia/Lymphoma 1A is essential for mouse epidermal keratinocytes proliferation promoted by insulin-like growth factor 1

T Cell Leukemia/Lymphoma 1A is expressed during B-cell differentiation and, when overexpressed, acts as an oncogene in mouse (Tcl1a) and human (TCL1A) B-cell chronic lymphocytic leukemia (B-CLL) and T-cell prolymphocytic leukemia (T-PLL). Furthermore, in the murine system Tcl1a is expressed in the ovary, testis and in pre-implantation embryos, where it plays an important role in blastomere proliferation and in embryonic stem cell (ESC) proliferation and self-renewal. We have also observed that Tcl1-/-adult mice exhibit alopecia and deep ulcerations. This finding has led us to investigate the role of TCL1 in mouse skin and hair follicles. We have found that TCL1 is expressed in the proliferative structure (i.e.The secondary hair germ) and in the stem cell niche (i.e.The bulge) of the hair follicle during regeneration phase and it is constitutively expressed in the basal layer of epidermis where it is required for the correct proliferative-differentiation program of the keratinocytes (KCs). Taking advantage of the murine models we have generated, including the Tcl1-/-and the K14-TCL1 transgenic mouse, we have analysed the function of TCL1 in mouse KCs and the molecular pathways involved. We provide evidence that in the epidermal compartment TCL1 has a role in the regulation of KC proliferation, differentiation, and apoptosis. In particular, the colony-forming efficiency (CFE) and the insulin-like growth factor 1 (IGF1)-induced proliferation are dramatically impaired, while apoptosis is increased, in KCs from Tcl1-/-mice when compared to WT. Moreover, the expression of differentiation markers such as cytokeratin 6 (KRT6), filaggrin (FLG) and involucrin (IVL) are profoundly altered in mutant mice (Tcl1-/-). Importantly, by over-expressing TCL1A in basal KCs of the K14-TCL1 transgenic mouse model, we observed a significant rescue of cell proliferation, differentiation and apoptosis of the mutant phenotype. Finally, we found TCL1 to act, at least in part, via increasing phospho-ERK1/2 and decreasing phospho-P38 MAPK. Hence, our data demonstrate that regulated levels of Tcl1a are necessary for the correct proliferation and differentiation of the interfollicular KC

C to U Editing Stimulates A to I Editing in the Anticodon Loop of a Cytoplasmic Threonyl tRNA in Trypanosoma brucei

Editing of tRNAs is widespread in nature and either changes the decoding properties or restores the folding of a tRNA. Unlike the phylogenetically disperse adenosine (A) to inosine (I) editing, cytosine (C) to uridine (U) editing has only been previously described in organellar tRNAs. We have shown that cytoplasmic tRNAThr(AGU) undergoes two distinct editing events in the anticodon loop: C to U and A to I. In vivo, every inosine-containing tRNAThr is also C to U edited at position 32. In vitro, C to U editing stimulates conversion of A to I at the wobble base. Although the in vivo and in vitro requirements differ, in both cases, the C to U change plays a key role in A to I editing. Due to an unusual abundance of A34-containing tRNAs, our results also suggest that the unedited and edited tRNAs are functional, each dedicated to decoding a specific threonine codon. C to U editing of cytoplasmic tRNA expands the editing repertoire in eukaryotic cells, and when coupled to A to I changes, leads to an interrelation between editing sites

Cosmological hydrodynamical simulations of galaxy clusters: X-ray scaling relations and their evolution

We analyse cosmological hydrodynamical simulations of galaxy clusters to study the X-ray scaling relations between total masses and observable quantities such as X-ray luminosity, gas mass, X-ray temperature, and $Y_{X}$. Three sets of simulations are performed with an improved version of the smoothed particle hydrodynamics GADGET-3 code. These consider the following: non-radiative gas, star formation and stellar feedback, and the addition of feedback by active galactic nuclei (AGN). We select clusters with $M_{500} > 10^{14} M_{\odot} E(z)^{-1}$, mimicking the typical selection of Sunyaev-Zeldovich samples. This permits to have a mass range large enough to enable robust fitting of the relations even at $z \sim 2$. The results of the analysis show a general agreement with observations. The values of the slope of the mass-gas mass and mass-temperature relations at $z=2$ are 10 per cent lower with respect to $z=0$ due to the applied mass selection, in the former case, and to the effect of early merger in the latter. We investigate the impact of the slope variation on the study of the evolution of the normalization. We conclude that cosmological studies through scaling relations should be limited to the redshift range $z=0-1$, where we find that the slope, the scatter, and the covariance matrix of the relations are stable. The scaling between mass and $Y_X$ is confirmed to be the most robust relation, being almost independent of the gas physics. At higher redshifts, the scaling relations are sensitive to the inclusion of AGNs which influences low-mass systems. The detailed study of these objects will be crucial to evaluate the AGN effect on the ICM.Comment: 24 pages, 11 figures, 5 tables, replaced to match accepted versio

Vanillin prevents doxorubicin-induced apoptosis and oxidative stress in rat H9c2 cardiomyocytes

Doxorubicin (doxo) is an effective anticancer compound in several tumor types. However, as a consequence of oxidative stress induction and ROS overproduction, its high cardiotoxicity demands urgent attention. Vanillin possesses antioxidant, antiproliferative, antidepressant and anti-glycating properties. Therefore, we investigated the potential vanillin protective effects against doxo-induced cardiotoxicity in H9c2 cells. Using multiparametric approach, we demonstrated that vanillin restored both cell viability and damage in response to doxo exposure. Contextually, vanillin decreased sub-G1 appearance and caspase-3 and PARP1 activation, reducing the doxo-related apoptosis induction. From a mechanistic point of view, vanillin hindered doxo-induced ROS accumulation and impaired the ERK phosphorylation. Notably, besides the cardioprotective effects, vanillin did not counteract the doxo effectiveness in osteosarcoma cells. Taken together, our results suggest that vanillin ameliorates doxo-induced toxicity in H9c2 cells, opening new avenues for developing alternative therapeutic approaches to prevent the anthracycline-related cardiotoxicity and to improve the long-term outcome of antineoplastic treatment

Superclusters of galaxies from the 2dF redshift survey. II. Comparison with simulations

We investigate properties of superclusters of galaxies found on the basis of the 2dF Galaxy Redshift Survey, and compare them with properties of superclusters from the Millennium Simulation. We study the dependence of various characteristics of superclusters on their distance from the observer, on their total luminosity, and on their multiplicity. The multiplicity is defined by the number of Density Field (DF) clusters in superclusters. Using the multiplicity we divide superclusters into four richness classes: poor, medium, rich and extremely rich. We show that superclusters are asymmetrical and have multi-branching filamentary structure, with the degree of asymmetry and filamentarity being higher for the more luminous and richer superclusters. The comparison of real superclusters with Millennium superclusters shows that most properties of simulated superclusters agree very well with real data, the main differences being in the luminosity and multiplicity distributions.Comment: 15 pages, 13 Figures, submitted for Astronomy and Astrophysic

Aspect-based Sentiment Analysis of Scientific Reviews

Scientific papers are complex and understanding the usefulness of these papers requires prior knowledge. Peer reviews are comments on a paper provided by designated experts on that field and hold a substantial amount of information, not only for the editors and chairs to make the final decision, but also to judge the potential impact of the paper. In this paper, we propose to use aspect-based sentiment analysis of scientific reviews to be able to extract useful information, which correlates well with the accept/reject decision. While working on a dataset of close to 8k reviews from ICLR, one of the top conferences in the field of machine learning, we use an active learning framework to build a training dataset for aspect prediction, which is further used to obtain the aspects and sentiments for the entire dataset. We show that the distribution of aspect-based sentiments obtained from a review is significantly different for accepted and rejected papers. We use the aspect sentiments from these reviews to make an intriguing observation, certain aspects present in a paper and discussed in the review strongly determine the final recommendation. As a second objective, we quantify the extent of disagreement among the reviewers refereeing a paper. We also investigate the extent of disagreement between the reviewers and the chair and find that the inter-reviewer disagreement may have a link to the disagreement with the chair. One of the most interesting observations from this study is that reviews, where the reviewer score and the aspect sentiments extracted from the review text written by the reviewer are consistent, are also more likely to be concurrent with the chair's decision.Comment: Accepted in JCDL'2

Breadfruit, Artocarpus altilis (Parkinson) Fosberg

Despite its widespread distribution and use, little work has been done on characterization, evaluation and description of breadfruit germplasm. This publication describes the genetic resources of breadfruit and provides an in-depth look at the current status of breadfruit conservation and the extent of ex situ germplasm collections, especially in the Pacific Islands. Chapters cover the following topics: taxonomy, botany, evolution and domestication, properties and uses, conservation and genetic diversity, breeding, production, ecology, agronomy, and limitations, prospects and research needs. Two appendices detail research contacts and research centres, both by country. (Abstract © CAB ABSTRACTS, CAB International