A role for diatom-like silicon transporters in calcifying coccolithophores

Biomineralization by marine phytoplankton, such as the silicifying diatoms and calcifying coccolithophores, plays an important role in carbon and nutrient cycling in the oceans. Silicification and calcification are distinct cellular processes with no known common mechanisms. It is thought that coccolithophores are able to outcompete diatoms in Si-depleted waters, which can contribute to the formation of coccolithophore blooms. Here we show that an expanded family of diatom-like silicon transporters (SITs) are present in both silicifying and calcifying haptophyte phytoplankton, including some globally important coccolithophores. Si is required for calcification in these coccolithophores, indicating that Si uptake contributes to the very different forms of biomineralization in diatoms and coccolithophores. Significantly, SITs and the requirement for Si are absent from highly abundant bloom-forming coccolithophores, such as Emiliania huxleyi. These very different requirements for Si in coccolithophores are likely to have major influence on their competitive interactions with diatoms and other siliceous phytoplankton

Collodictyon—An Ancient Lineage in the Tree of Eukaryotes

The current consensus for the eukaryote tree of life consists of several large assemblages (supergroups) that are hypothesized to describe the existing diversity. Phylogenomic analyses have shed light on the evolutionary relationships within and between supergroups as well as placed newly sequenced enigmatic species close to known lineages. Yet, a few eukaryote species remain of unknown origin and could represent key evolutionary forms for inferring ancient genomic and cellular characteristics of eukaryotes. Here, we investigate the evolutionary origin of the poorly studied protist Collodictyon (subphylum Diphyllatia) by sequencing a cDNA library as well as the 18S and 28S ribosomal DNA (rDNA) genes. Phylogenomic trees inferred from 124 genes placed Collodictyon close to the bifurcation of the “unikont” and “bikont” groups, either alone or as sister to the potentially contentious excavate Malawimonas. Phylogenies based on rDNA genes confirmed that Collodictyon is closely related to another genus, Diphylleia, and revealed a very low diversity in environmental DNA samples. The early and distinct origin of Collodictyon suggests that it constitutes a new lineage in the global eukaryote phylogeny. Collodictyon shares cellular characteristics with Excavata and Amoebozoa, such as ventral feeding groove supported by microtubular structures and the ability to form thin and broad pseudopods. These may therefore be ancient morphological features among eukaryotes. Overall, this shows that Collodictyon is a key lineage to understand early eukaryote evolution

The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton

Eukaryotic microorganisms have been undersampled in biodiversity studies in freshwater environments. We present an original 18S rDNA survey of freshwater picoeukaryotes sampled during spring/summer 2005, complementing an earlier study conducted in autumn 2004 in Lake Pavin (France). These studies were designed to detect the small unidentified heterotrophic flagellates (HF, 0.6–5 µm) which are considered the main bacterivores in aquatic systems. Alveolates, Fungi and Stramenopiles represented 65% of the total diversity and differed from the dominant groups known from microscopic studies. Fungi and Telonemia taxa were restricted to the oxic zone which displayed two fold more operational taxonomic units (OTUs) than the oxycline. Temporal forcing also appeared as a driving force in the diversification within targeted organisms. Several sequences were not similar to those in databases and were considered as new or unsampled taxa, some of which may be typical of freshwater environments. Two taxa known from marine systems, the genera Telonema and Amoebophrya, were retrieved for the first time in our freshwater study. The analysis of potential trophic strategies displayed among the targeted HF highlighted the dominance of parasites and saprotrophs, and provided indications that these organisms have probably been wrongfully regarded as bacterivores in previous studies. A theoretical exercise based on a new ‘parasite/saprotroph-dominated HF hypothesis’ demonstrates that the inclusion of parasites and saprotrophs may increase the functional role of the microbial loop as a link for carbon flows in pelagic ecosystems. New interesting perspectives in aquatic microbial ecology are thus opened

Genome-Wide Transcriptome Analyses of Silicon Metabolism in Phaeodactylum tricornutum Reveal the Multilevel Regulation of Silicic Acid Transporters

BACKGROUND:Diatoms are largely responsible for production of biogenic silica in the global ocean. However, in surface seawater, Si(OH)(4) can be a major limiting factor for diatom productivity. Analyzing at the global scale the genes networks involved in Si transport and metabolism is critical in order to elucidate Si biomineralization, and to understand diatoms contribution to biogeochemical cycles. METHODOLOGY/PRINCIPAL FINDINGS:Using whole genome expression analyses we evaluated the transcriptional response to Si availability for the model species Phaeodactylum tricornutum. Among the differentially regulated genes we found genes involved in glutamine-nitrogen pathways, encoding putative extracellular matrix components, or involved in iron regulation. Some of these compounds may be good candidates for intracellular intermediates involved in silicic acid storage and/or intracellular transport, which are very important processes that remain mysterious in diatoms. Expression analyses and localization studies gave the first picture of the spatial distribution of a silicic acid transporter in a diatom model species, and support the existence of transcriptional and post-transcriptional regulations. CONCLUSIONS/SIGNIFICANCE:Our global analyses revealed that about one fourth of the differentially expressed genes are organized in clusters, underlying a possible evolution of P. tricornutum genome, and perhaps other pennate diatoms, toward a better optimization of its response to variable environmental stimuli. High fitness and adaptation of diatoms to various Si levels in marine environments might arise in part by global regulations from gene (expression level) to genomic (organization in clusters, dosage compensation by gene duplication), and by post-transcriptional regulation and spatial distribution of SIT proteins

Influência da variação do nível hidrométrico na comunidade fitoplanctônica do Rio Paranapanema e de uma lagoa marginal na zona de desembocadura na Represa de Jurumirim (SP)

Este estudo visou analisar os efeitos da variação do nível hidrométrico na estrutura do fitoplâncton do Rio Paranapanema e de uma lagoa marginal na zona de desembocadura no Reservatório de Jurumirim (SP). As amostragens foram realizadas em duas estações em cada ambiente de julho/2004 a julho/2005. Os maiores valores de riqueza e diversidade foram encontrados na estiagem, enquanto que as maiores densidade e biovolume foram registradas na cheia. A espécie Cryptomonas brasiliensis Castro, C. Bicudo & D. Bicudo (R - estrategista) foi constante ao longo de todo o estudo, sendo dominante, principalmente, no final da estiagem e na enchente, quando os eventos de distúrbios foram mais freqüentes. As diatomáceas foram predominantes quanto à biomassa, representadas, principalmente, por Aulacoseira granulata (Ehrenberg) Simonsem e suas variedades. Conclui-se que, o volume de água acumulada no reservatório à jusante não permite que o pulso hidrológico ocasione um distúrbio que resulte em elevado aumento da diversidade nos ambientes estudados, após a enchente.The aim of this study was to show the effects of hydrometric level variation on phytoplankton structure of the Paranapanema River and a marginal lake in its mouth zone into Jurumirim Reservoir (SP). The samplings were collected in two stations in each environment from July 2004 to July 2005. The highest species richness and diversity of phytoplankton species were found in dry season, while them highest density and biovolume were recorded during the high water period The specie Cryptomonas brasiliensis Castro, C. Bicudo & D. Bicudo (R-strategist) was constant along whole the study, being dominant, mainly, in the end of the drought and in the inundation, when the events of disturbances were more frequent. Diatoms predominated in biovolume in relation to other algae, mainly, for Aulacoseira granulata (Ehrenberg) Simonsem and their varieties. The great water volume stored in Jurumirim Reservoir acts as a plug system and the flood pulses of the main tributary are relatively weak. Thus, the stable water level is not a disturbance event that results in high increase of diversity in the studied environments, after the inundation.Escola de Engenharia de São Carlos Centro de Recursos Hídricos e Ecologia AplicadaUniversidade Estadual Paulista Instituto de Biociências Departamento de ZoologiaInstituto de BotânicaUniversidade Estadual Paulista Instituto de Biociências Departamento de Zoologi