Effects of coastal urbanization on salt-marsh faunal assemblages in the northern Gulf of Mexico

Author Posting. © American Fisheries Society, 2014. This article is posted here by permission of American Fisheries Society for personal use, not for redistribution. The definitive version was published in Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science 6 (2014): 89-107, doi:10.1080/19425120.2014.893467.Coastal landscapes in the northern Gulf of Mexico, specifically the Mississippi coast, have undergone rapid urbanization that may impact the suitability of salt-marsh ecosystems for maintaining and regulating estuarine faunal communities. We used a landscape ecology approach to quantify the composition and configuration of salt-marsh habitats and developed surfaces at multiple spatial scales surrounding three small, first-order salt-marsh tidal creeks arrayed along a gradient of urbanization in two river-dominated estuaries. From May 3 to June 4, 2010, nekton and macroinfauna were collected weekly at all six sites. Due to the greater abundance of grass shrimp Palaemonetes spp., brown shrimp Farfantepenaeus aztecus, blue crab Callinectes sapidus, Gulf Menhaden Brevoortia patronus, and Spot Leiostomus xanthurus, tidal creeks in intact natural (IN) salt-marsh landscapes supported a nekton assemblage that was significantly different from those in partially urbanized (PU) or completely urbanized (CU) salt-marsh landscapes. However, PU landscapes still supported an abundant nekton assemblage. In addition, the results illustrated a linkage between life history traits and landscape characteristics. Resident and transient nekton species that have specific habitat requirements are more likely to be impacted in urbanized landscapes than more mobile species that are able to exploit multiple habitats. Patterns were less clear for macroinfaunal assemblages, although they were comparatively less abundant in CU salt-marsh landscapes than in either IN or PU landscapes. The low abundance or absence of several macroinfaunal taxa in CU landscapes may be viewed as an additional indicator of poor habitat quality for nekton. The observed patterns also suggested that benthic sediments in the CU salt-marsh landscapes were altered in comparison with IN or PU landscapes. The amount of developed shoreline and various metrics related to salt marsh fragmentation were important drivers of observed patterns in nekton and macroinfaunal assemblages

The effect of minor and major mergers on the evolution of low-excitation radio galaxies

We use deep, μ r lesssim 28 mag arcsec−2, r-band imaging from the Dark Energy Camera Legacy Survey to search for past, or ongoing, merger activity in a sample of 282 low-excitation radio galaxies (LERGs) at z 4σ excess of major mergers in the LERGs with M * lesssim 1011 M⊙, with 10 ± 1.5% of these active galactic nuclei involved in such large-scale interactions compared to 3.2 ± 0.4% of control galaxies. This excess of major mergers in LERGs decreases with increasing stellar mass, vanishing by M * > 1011.3 M⊙. These observations show that minor mergers do not fuel LERGs, and are consistent with typical LERGs being powered by accretion of matter from their halo. Where LERGs are associated with major mergers, these objects may evolve into more efficiently accreting active galactic nuclei as the merger progresses and more gas falls on to the central engine

Proteomic characterization and cross species comparison of mammalian seminal plasma

Seminal plasma contains a large protein component which has been implicated in the function, transit and survival of spermatozoa within the female reproductive tract. However, the identity of the majority of these proteins remains unknown and a direct comparison between the major domestic mammalian species has yet to be made. As such, the present study characterized and compared the seminal plasma proteomes of cattle, horse, sheep, pig, goat, camel and alpaca. GeLC-MS/MS and shotgun proteomic analysis by 2D-LC-MS/MS identified a total of 302 proteins in the seminal plasma of the chosen mammalian species. Nucleobindin 1 and RSVP14, a member of the BSP (binder of sperm protein) family, were identified in all species. Beta nerve growth factor (bNGF), previously identified as an ovulation inducing factor in alpacas and llamas, was identified in this study in alpaca and camel (induced ovulators), cattle, sheep and horse (spontaneous ovulators) seminal plasma. These findings indicate that while the mammalian species studied have common ancestry as ungulates, their seminal plasma is divergent in protein composition, which may explain variation in reproductive capacity and function. The identification of major specific proteins within seminal plasma facilitates future investigation of the role of each protein in mammalian reproduction. BIOLOGICAL SIGNIFICANCE: This proteomic study is the first study to compare the protein composition of seminal plasma from seven mammalian species including two camelid species. Beta nerve growth factor, previously described as the ovulation inducing factor in camelids is shown to be the major protein in alpaca and camel seminal plasma and also present in small amounts in bull, ram, and horse seminal plasma

The XXL Survey XLV. Linking the ages of optically selected groups to their X-ray emission

We investigate the properties of 232 optical spectroscopically selected groups from the Galaxy And Mass Assembly (GAMA) survey that overlap the XXL X-ray cluster survey. X-ray aperture flux measurements combined with GAMA group data provides the largest available sample of optical groups with detailed galaxy membership information and consistently measured X-ray fluxes and upper limits. 142 of these groups are divided into three subsets based on the relative strength of X-ray and optical emission, and we see a trend in galaxy properties between these subsets: X-ray overluminous groups contain a lower fraction of both blue and star forming galaxies compared with X-ray underluminous systems. X-ray overluminous groups also have a more dominant central galaxy, with a magnitude gap between first and second ranked galaxies on average 0.22 mag larger than in underluminous groups. The central galaxy in overluminous groups also lies closer to the centre of the group. We examine a number of other structural properties of our groups, such as axis ratio, velocity dispersion, and group crossing time and find trends with X-ray emission in some of these properties despite the high stochastic noise from the limited number of group galaxies. We attribute the trends we see to the evolutionary state of groups, with X-ray overluminous systems being more dynamically evolved than underluminous groups. The X-ray overluminous groups have had more time to develop a luminous intragroup medium, quench member galaxies, and build the mass of the central galaxy through mergers compared to underluminous groups. However, a minority of X-ray underluminous groups have properties that suggest them to be dynamically mature. The lack of hot gas in these systems cannot be accounted for by high star formation efficiency, suggesting that high gas entropy resulting from feedback is the likely cause of their weak X-ray emission

The XXL Survey XLV. Linking the ages of optically selected groups to their X-ray emission

We investigate the properties of 232 optical spectroscopically selected groups from the Galaxy And Mass Assembly (GAMA) survey that overlap the XXL X-ray cluster survey. X-ray aperture flux measurements combined with GAMA group data provides the largest available sample of optical groups with detailed galaxy membership information and consistently measured X-ray fluxes and upper limits. 142 of these groups are divided into three subsets based on the relative strength of X-ray and optical emission, and we see a trend in galaxy properties between these subsets: X-ray overluminous groups contain a lower fraction of both blue and star forming galaxies compared with X-ray underluminous systems. X-ray overluminous groups also have a more dominant central galaxy, with a magnitude gap between first and second ranked galaxies on average 0.22 mag larger than in underluminous groups. The central galaxy in overluminous groups also lies closer to the centre of the group. We examine a number of other structural properties of our groups, such as axis ratio, velocity dispersion, and group crossing time and find trends with X-ray emission in some of these properties despite the high stochastic noise from the limited number of group galaxies. We attribute the trends we see to the evolutionary state of groups, with X-ray overluminous systems being more dynamically evolved than underluminous groups. The X-ray overluminous groups have had more time to develop a luminous intragroup medium, quench member galaxies, and build the mass of the central galaxy through mergers compared to underluminous groups. However, a minority of X-ray underluminous groups have properties that suggest them to be dynamically mature. The lack of hot gas in these systems cannot be accounted for by high star formation efficiency, suggesting that high gas entropy resulting from feedback is the likely cause of their weak X-ray emission

A genome-wide scan for common alleles affecting risk for autism

Although autism spectrum disorders (ASDs) have a substantial genetic basis, most of the known genetic risk has been traced to rare variants, principally copy number variants (CNVs). To identify common risk variation, the Autism Genome Project (AGP) Consortium genotyped 1558 rigorously defined ASD families for 1 million single-nucleotide polymorphisms (SNPs) and analyzed these SNP genotypes for association with ASD. In one of four primary association analyses, the association signal for marker rs4141463, located within MACROD2, crossed the genome-wide association significance threshold of P < 5 3 10-28. When a smaller replication sample was analyzed, the risk allele at rs4141463 was again over-transmitted; yet, consistent with the winner's curse, its effect size in the replication sample was much smaller; and, for the combined samples, the association signal barely fell below the P < 5 × 10-28 threshold. Exploratory analyses of phenotypic subtypes yielded no significant associations after correction for multiple testing. They did, however, yield strong signals within several genes, KIAA0564, PLD5, POU6F2, ST8SIA2 and TAF1C. © The Author 2010. Published by Oxford University Press. All rights reserved

Functional impact of global rare copy number variation in autism spectrum disorders

The autism spectrum disorders (ASDs) are a group of conditions characterized by impairments in reciprocal social interaction and communication, and the presence of restricted and repetitive behaviours 1. Individuals with an ASD vary greatly in cognitive development, which can range from above average to intellectual disability2. Although ASDs are known to be highly heritable ( ∼90%)3, the underlying genetic determinants are still largely unknown.Hereweanalysed the genome-wide characteristics of rare (<1%frequency) copy number variation in ASD using dense genotyping arrays. When comparing 996 ASD individuals of European ancestry to 1,287 matched controls, cases were found to carry a higher global burden of rare, genic copy number variants (CNVs) (1.19 fold, P=0.012), especially so for loci previously implicated in either ASDand/or intellectual disability (1.69 fold, P=3.4×310-4). Among the CNVs there were numerous de novo and inherited events, sometimes in combination in a given family, implicating many novel ASD genes such as SHANK2, SYNGAP1, DLGAP2 and the X-linked DDX53-PTCHD1 locus. We also discovered an enrichment of CNVs disrupting functional gene sets involved in cellular proliferation, projection and motility, and GTPase/Ras signalling. Our results reveal many new genetic and functional targets in ASD that may lead to final connected pathways. © 2010 Macmillan Publishers Limited. All rights reserved