Support vector classification analysis of resting state functional connectivity fMRI

Since its discovery in 1995 resting state functional connectivity derived from functional MRI data has become a popular neuroimaging method for study psychiatric disorders. Current methods for analyzing resting state functional connectivity in disease involve thousands of univariate tests, and the specification of regions of interests to employ in the analysis. There are several drawbacks to these methods. First the mass univariate tests employed are insensitive to the information present in distributed networks of functional connectivity. Second, the null hypothesis testing employed to select functional connectivity dierences between groups does not evaluate the predictive power of identified functional connectivities. Third, the specification of regions of interests is confounded by experimentor bias in terms of which regions should be modeled and experimental error in terms of the size and location of these regions of interests. The objective of this dissertation is to improve the methods for functional connectivity analysis using multivariate predictive modeling, feature selection, and whole brain parcellation. A method of applying Support vector classification (SVC) to resting state functional connectivity data was developed in the context of a neuroimaging study of depression. The interpretability of the obtained classifier was optimized using feature selection techniques that incorporate reliability information. The problem of selecting regions of interests for whole brain functional connectivity analysis was addressed by clustering whole brain functional connectivity data to parcellate the brain into contiguous functionally homogenous regions. This newly developed famework was applied to derive a classifier capable of correctly seperating the functional connectivity patterns of patients with depression from those of healthy controls 90% of the time. The features most relevant to the obtain classifier match those previously identified in previous studies, but also include several regions not previously implicated in the functional networks underlying depression.Ph.D.Committee Chair: Hu, Xiaoping; Committee Co-Chair: Vachtsevanos, George; Committee Member: Butera, Robert; Committee Member: Gurbaxani, Brian; Committee Member: Mayberg, Helen; Committee Member: Yezzi, Anthon

Liquid Phase Hydrodechlorination of Dieldrin and DDT over Pd/C and Raney-Ni

Selectivity and product distribution of hydrodechlorination (HDCl) of dieldrin and DDT are studied in different liquid phase systems, namely in: (1) in ethanol; and (2) in the supported ionic liquid heterogeneous catalytic system (multiphase system), composed by the organic phase and aqueous KOH, a quaternary ammonium ionic liquid promoter (Aliquat 336), and a metal catalyst, e.g. 5% Pd/C, 5% Pt/C, or Raney-Ni. At 50 8C and atmospheric pressure of hydrogen, a quantitative hydrodechlorination of DDT in the biphasic system with ionic liquid layer is achieved in 40 min and in 4 h with Raney-Ni and Pd/C, respectively, while the reaction on Pt/C or on Pd/C without Aliquat 336 is slow. Dieldrin undergoes partial dechlorination, with high selectivity achievable only for its mono- and bi-dechlorination products. Dechlorination pathways and reactivity of different types of organic chlorine atoms versus the catalyst nature and other conditions are discussed

Improving Prediction of Real-Time Loneliness and Companionship Type Using Geosocial Features of Personal Smartphone Data

Loneliness is a widely affecting mental health symptom and can be mediated by and co-vary with patterns of social exposure. Using momentary survey and smartphone sensing data collected from 129 Android-using college student participants over three weeks, we (1) investigate and uncover the relations between momentary loneliness experience and companionship type and (2) propose and validate novel geosocial features of smartphone-based Bluetooth and GPS data for predicting loneliness and companionship type in real time. We base our features on intuitions characterizing the quantity and spatiotemporal predictability of an individual's Bluetooth encounters and GPS location clusters to capture personal significance of social exposure scenarios conditional on their temporal distribution and geographic patterns. We examine our features' statistical correlation with momentary loneliness through regression analyses and evaluate their predictive power using a sliding window prediction procedure. Our features achieved significant performance improvement compared to baseline for predicting both momentary loneliness and companionship type, with the effect stronger for the loneliness prediction task. As such we recommend incorporation and further evaluation of our geosocial features proposed in this study in future mental health sensing and context-aware computing applications.This work was supported by Whole Communities—Whole Health, a research grand challenge at the University of Texas at AustinOffice of the VP for Researc

Patterns of thought: population variation in the associations between large-scale network organisation and self-reported experiences at rest

International audienceContemporary cognitive neuroscience recognises unconstrained processing varies across individuals, describing variation in meaningful attributes, such as intelligence. It may also have links to patterns of on-going experience. This study examined whether dimensions of population variation in different modes of unconstrained processing can be described by the associations between patterns of neural activity and self-reports of experience during the same period. We selected 258 individuals from a publicly available data set who had measures of resting-state functional magnetic resonance imaging, and self-reports of experience during the scan. We used machine learning to determine patterns of association between the neural and self-reported data, finding variation along four dimensions. ‘Purposeful’ experiences were associated with lower connectivity -in particular default mode and limbic networks were less correlated with attention and sensorimotor networks. ‘Emotional’ experiences were associated with higher connectivity, especially between limbic and ventral attention networks. Experiences focused on themes of ‘personal importance’ were associated with reduced functional connectivity within attention and control systems. Finally, visual experiences were associated with stronger connectivity between visual and other networks, in particular the limbic system. Some of these patterns had contrasting links with cognitive function as assessed in a separate laboratory session -purposeful thinking was linked to greater intelligence and better abstract reasoning, while a focus on personal importance had the opposite relationship. Together these findings are consistent with an emerging literature on unconstrained states and also underlines that these states are heterogeneous, with distinct modes of population variation reflecting the interplay of different large-scale networks

Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging

Previous literature has focused on predicting a diagnostic label from structural brain imaging. Since subtle changes in the brain precede a cognitive decline in healthy and pathological aging, our study predicts future decline as a continuous trajectory instead. Here, we tested whether baseline multimodal neuroimaging data improve the prediction of future cognitive decline in healthy and pathological aging. Nonbrain data (demographics, clinical, and neuropsychological scores), structural MRI, and functional connectivity data from OASIS-3 (N = 662; age = 46–96 years) were entered into cross-validated multitarget random forest models to predict future cognitive decline (measured by CDR and MMSE), on average 5.8 years into the future. The analysis was preregistered, and all analysis code is publicly available. Combining non-brain with structural data improved the continuous prediction of future cognitive decline (best test-set performance: R2 = 0.42). Cognitive performance, daily functioning, and subcortical volume drove the performance of our model. Including functional connectivity did not improve predictive accuracy. In the future, the prognosis of age-related cognitive decline may enable earlier and more effective individualized cognitive, pharmacological, and behavioral interventions

Patterns of thought : Population variation in the associations between large-scale network organisation and self-reported experiences at rest

Contemporary cognitive neuroscience recognises unconstrained processing varies across individuals, describing variation in meaningful attributes, such as intelligence. It may also have links to patterns of on-going experience. This study examined whether dimensions of population variation in different modes of unconstrained processing can be described by the associations between patterns of neural activity and self-reports of experience during the same period. We selected 258 individuals from a publicly available data set who had measures of resting-state functional magnetic resonance imaging, and self-reports of experience during the scan. We used machine learning to determine patterns of association between the neural and self-reported data, finding variation along four dimensions. ‘Purposeful’ experiences were associated with lower connectivity - in particular default mode and limbic networks were less correlated with attention and sensorimotor networks. ‘Emotional’ experiences were associated with higher connectivity, especially between limbic and ventral attention networks. Experiences focused on themes of ‘personal importance’ were associated with reduced functional connectivity within attention and control systems. Finally, visual experiences were associated with stronger connectivity between visual and other networks, in particular the limbic system. Some of these patterns had contrasting links with cognitive function as assessed in a separate laboratory session - purposeful thinking was linked to greater intelligence and better abstract reasoning, while a focus on personal importance had the opposite relationship. Together these findings are consistent with an emerging literature on unconstrained states and also underlines that these states are heterogeneous, with distinct modes of population variation reflecting the interplay of different large-scale networks

Streetsport: Supporting and facilitating the development of enhanced graduate attributes.

Streetsport is a programme that aims to exercise social innovation by reducing instances of youth crime and anti-social behaviour; whilst promoting health and wellbeing through sport, physical activity and creative endeavour. As a vehicle for delivery the initiative facilitates work based educational experiences that are embedded within disadvantaged communities; supporting the development of enhanced graduate attributes by way of collaborative teaching and learning support. Adopting a collaborative partnership model, the programme brings together multiple courses, students and stakeholders to work within communities resulting in activities that react and respond to local needs, interests and demand

The ENIGMA Stroke Recovery Working Group: Big data neuroimaging to study brain–behavior relationships after stroke

The goal of the Enhancing Neuroimaging Genetics through Meta‐Analysis (ENIGMA) Stroke Recovery working group is to understand brain and behavior relationships using well‐powered meta‐ and mega‐analytic approaches. ENIGMA Stroke Recovery has data from over 2,100 stroke patients collected across 39 research studies and 10 countries around the world, comprising the largest multisite retrospective stroke data collaboration to date. This article outlines the efforts taken by the ENIGMA Stroke Recovery working group to develop neuroinformatics protocols and methods to manage multisite stroke brain magnetic resonance imaging, behavioral and demographics data. Specifically, the processes for scalable data intake and preprocessing, multisite data harmonization, and large‐scale stroke lesion analysis are described, and challenges unique to this type of big data collaboration in stroke research are discussed. Finally, future directions and limitations, as well as recommendations for improved data harmonization through prospective data collection and data management, are provided