Examination of the Potential of Structure-from-Motion Photogrammetry and Terrestrial Laser Scanning for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. While destructive sampling of AGB is highly accurate, it is time consuming and often precludes repeat temporal sampling or sampling in sensitive ecosystems. Consequently, a number of nondestructive techniques that relate grass structural properties to AGB have been developed. This study investigated the application of two recent technologies, Terrestrial Laser Scanning (TLS) and Structurefrom- Motion (SfM), in the development of rapid nondestructive AGB estimation of grassland plots. TLS and SfM volume metrics generated using a rasterized surface differencing method were linearly related to destructively measured total AGB and grass AGB excluding all litter, and results were compared to the conventional disc pasture meter. The linear models were assessed using a leave-one-out cross validation scheme. The disc pasture meter was found to be the least reliable method in assessing total AGB (r2 = 0.32, RMSELOOCV = 269 g/m2). SfM (r2 = 0.74, RMSELOOCV = 169 g/m2) outperformed TLS (r2 = 0.56, RMSELOOCV = 219 g/m2), though a much larger slope in SfM regressions suggests an increased sensitivity to error. Litter removal decreased the effectiveness of AGB estimation for both TLS (r2 = 0.49) and SfM (r2 = 0.51) but increased the fit of disc pasture meter estimations (r2 = 0.42), highlighting the complex relationship between litter accumulation and AGB. TLS and SfM derived volumes were shown to be insensitive to cell dimensions when calculating volume provided cell dimensions were large enough to ensure no empty cells occurred. Using observed ground surfaces in volumetric calculations rather than an estimated ground plane increased r2 to 0.63 for TLS and 0.77 for SfM. Though the disc pasture meter was found to be the most rapid of the three methods, TLS and SfM both out performed it and have clearly demonstrated their potential utility for AGB estimation of grass systems. Their ability to systematically collect measurements over larger spatial extents than those investigated here could greatly outpace the disc pasture meter’s predictive capabilities and speed

Examination of the Potential of Terrestrial Laser Scanning and Structure-from-Motion Photogrammetry for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. Destructive AGB measurements, although accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield precise 3D structural measurements of vegetation quite rapidly. Recent advances have led to the successful application of TLS and SfM in woody biomass estimation, but application in natural grassland systems remains largely untested. The potential of these techniques for AGB estimation is examined considering 11 grass plots with a range of biomass in South Dakota, USA. Volume metrics extracted from the TLS and SfM 3D point clouds, and also conventional disc pasture meter settling heights, were compared to destructively harvested AGB total (grass and litter) and AGB grass plot measurements. Although the disc pasture meter was the most rapid method, it was less effective in AGB estimation (AGBgrass r2 = 0.42, AGBtotal r2 = 0.32) than the TLS (AGBgrass r2 = 0.46, AGBtotal r2 = 0.57) or SfM (AGBgrass r2 = 0.54, AGBtotal r2 = 0.72) which both demonstrated their utility for rapid AGB estimation of grass systems

The tracking of active travel and its relationship with body composition in UK adolescents

AbstractBackgroundTo examine the tracking of active travel through adolescence, and its association with body mass index (BMI) and fat mass at age 17 in a UK cohort.MethodsWe analysed data collected from the Avon Longitudinal Study of Parents and Children (ALSPAC). The analyses include all participants with self-reported travel mode to school at ages 12, 14 and 16 years, and measured height, weight and body composition at age 17 (n=2,026). Tracking coefficients were calculated for individual travel behaviours (including walking and cycling) through adolescence using Generalised Estimating Equations. Linear regression analyses examined associations between travel pattern (consistently passive, consistently active, active at two time points or active at one time point), BMI, and DXA-measured fat mass (expressed as internally derived standard deviation scores) at 17 years. Analyses were adjusted for height (where appropriate), sex, age, parental social class, and maternal education with interaction terms to assess sex differences.ResultsThere was substantial tracking in active travel through adolescence, with 38.5% of males and 32.3% of females consistently walking or cycling to school. In males, a consistently or predominantly active travel pattern was associated with a lower BMI SD score at age 17 (consistently active: adjusted β=−0.23; 95% CI −0.40, −0.06; active at two time points: adjusted β−0.30; 95% CI −0.50, −0.10) compared to those with a consistently passive pattern. No associations were seen in females.ConclusionsMaintenance of active travel behaviours throughout adolescence may help to protect against the development of excess BMI in males. In addition to encouraging the adoption of active travel to school, public health messages should aim to prevent drop out from active travel to promote good health in youth

Examination of the Potential of Terrestrial Laser Scanning and Structure-from-Motion Photogrammetry for Rapid Nondestructive Field Measurement of Grass Biomass

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. Destructive AGB measurements, although accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield precise 3D structural measurements of vegetation quite rapidly. Recent advances have led to the successful application of TLS and SfM in woody biomass estimation, but application in natural grassland systems remains largely untested. The potential of these techniques for AGB estimation is examined considering 11 grass plots with a range of biomass in South Dakota, USA. Volume metrics extracted from the TLS and SfM 3D point clouds, and also conventional disc pasture meter settling heights, were compared to destructively harvested AGB total (grass and litter) and AGB grass plot measurements. Although the disc pasture meter was the most rapid method, it was less effective in AGB estimation (AGBgrass r 2 = 0.42, AGBtotal r 2 = 0.32) than the TLS (AGBgrass r 2 = 0.46, AGBtotal r 2 = 0.57) or SfM (AGBgrass r 2 = 0.54, AGBtotal r 2 = 0.72) which both demonstrated their utility for rapid AGB estimation of grass systems

Objectively measured physical activity and fat mass in a large cohort of children

Background Previous studies have been unable to characterise the association between physical activity and obesity, possibly because most relied on inaccurate measures of physical activity and obesity. Methods and Findings We carried out a cross sectional analysis on 5,500 12-year-old children enrolled in the Avon Longitudinal Study of Parents and Children. Total physical activity and minutes of moderate and vigorous physical activity (MVPA) were measured using the Actigraph accelerometer. Fat mass and obesity (defined as the top decile of fat mass) were measured using the Lunar Prodigy dual x-ray emission absorptiometry scanner. We found strong negative associations between MVPA and fat mass that were unaltered after adjustment for total physical activity. We found a strong negative dose-response association between MVPA and obesity. The odds ratio for obesity in adjusted models between top and the bottom quintiles of minutes of MVPA was 0.03 (95% confidence interval [CI] 0.01-0.13, p-value for trend < 0.0001) in boys and 0.36 (95% CI 0.17-0.74, p-value for trend = 0.006) in girls. Conclusions We demonstrated a strong graded inverse association between physical activity and obesity that was stronger in boys. Our data suggest that higher intensity physical activity may be more important than total activity

Objective Measurement of Physical Activity in Adults With Newly Diagnosed Type 1 Diabetes and Healthy Individuals

Aims: Physical activity (PA) has many benefits in type 1 diabetes mellitus (type 1 DM). However, PA levels in people with type 1 DM have not previously been measured accurately. We aimed to compare objectively measured PA in adults recently diagnosed with type 1 DM and healthy adults.Methods: Accelerometer data from 65 healthy adults [mean (SD) age 31 (13), 29% men] were compared with data from 50 people with type 1 DM [mean (SD) age 33 (10), 64% men], time since diagnosis <3months, HbA1c 76 ± 25 mmol/mol) in the EXTOD (Exercise for Type 1 Diabetes) pilot study. Briefly, EXTOD investigated the feasibility of recruiting recently diagnosed adults with type 1 DM into a yearlong exercise intervention. Multiple-regression models were used to investigate the association between diabetes status and activity outcomes.Results: Adults recently diagnosed with type 1 DM spent on average a quarter less time in moderate-to-vigorous-physical-activity (MVPA) per day than healthy adults [after adjusting for confounders, predicted values: type 1 DM adults: [mean (SD)] 37.4 mins/day (9.1) Healthy adults: 52.9 mins/day (11.0)]. No difference in MVPA between the groups was seen at the weekend, but adults with type 1 DM spent more time in light physical activity (LPA), and less time in sedentary behavior. Time spent in sedentary or LPA during weekdays did not differ between groups.Summary: Adults recently diagnosed with type 1 DM do less MVPA. Health care workers should encourage these people to engage in more PA. Further studies are needed to assess PA in people with type 1 DM of longer duration

Modelling neurological diseases in large animals: criteria for model selection and clinical assessment

Issue: The impact of neurological disorders is recognised globally, with one in six people affected in their lifetime and few treatments to slow or halt disease progression. This is due in part to the increasing ageing population, and is confounded by the high failure rate of translation from rodent-derived therapeutics to clinically effective human neurological interventions. Improved translation is demonstrated using higher order mammals with more complex/comparable neuroanatomy. These animals effectually span this translational disparity and increase confidence in factors including routes of administration/dosing and ability to scale, such that potential therapeutics will have successful outcomes when moving to patients. Coupled with advancements in genetic engineering to produce genetically tailored models, livestock are increasingly being used to bridge this translational gap. Approach: In order to aid in standardising characterisation of such models, we provide comprehensive neurological assessment protocols designed to inform on neuroanatomical dysfunction and/or lesion(s) for large animal species. We also describe the applicability of these exams in different large animals to help provide a better understanding of the practicalities of cross species neurological disease modelling. Recommendation: We would encourage the use of these assessments as a reference framework to help standardise neurological clinical scoring of large animal models

Patterns of Suicidal Ideation and Behavior in Northern Ireland and Associations with Conflict Related Trauma

In this study, data from the World Mental Health Survey's Northern Ireland (NI) Study of Health and Stress (NISHS) was used to assess the associations between conflict- and non-conflict-related traumatic events and suicidal behaviour, controlling for age and gender and the effects of mental disorders in NI. DSM mental disorders and suicidal ideation, plans and attempts were assessed using the Composite International Diagnostic Interview (CIDI) in a multi-stage, clustered area probability household sample (N = 4,340, response rate 68.4%). The traumatic event categories were based on event types listed in the PTSD section of the CIDI. Suicidal ideation and attempts were more common in women than men, however, rates of suicide plans were similar for both genders. People with mood, anxiety and substance disorders were significantly more likely than those without to endorse suicidal ideation, plan or attempt. The highest odds ratios for all suicidal behaviors were for people with any mental disorder. However, the odds of seriously considering suicide were significantly higher for people with conflict and non-conflict-related traumatic events compared with people who had not experienced a traumatic event. The odds of having a suicide plan remain significantly higher for people with conflict-related traumatic events compared to those with only non-conflict-related events and no traumatic events. Finally, the odds of suicide attempt were significantly higher for people who have only non-conflict-related traumatic events compared with the other two categories. The results suggest that traumatic events associated with the NI conflict may be associated with suicidal ideation and plans, and this effect appears to be in addition to that explained by the presence of mental disorders. The reduced rates of suicide attempts among people who have had a conflict-related traumatic event may reflect a higher rate of single, fatal suicide attempts in this population

A Practical Theory of Language-integrated Query

Language-integrated query is receiving renewed attention, in part because of its support through Microsoft’s LINQ framework. We present a practical theory of language-integrated query based on quotation and normalisation of quoted terms. Our technique supports join queries, abstraction over values and predicates, composition of queries, dynamic generation of queries, and queries with nested intermediate data. Higher-order features prove useful even for constructing first-order queries. We prove a theorem characterising when a host query is guaranteed to generate a single SQL query. We present experimental results confirming our technique works, even in situations where Microsoft’s LINQ framework either fails to produce an SQL query or, in one case, produces an avalanche of SQL queries