STARSPOTS ON WASP-85

By analyzing K2 short-cadence observations, we detect starspots on WASP-85A, the host star of the hot Jupiter WASP-85Ab. The detection of recurring starspot occultation events indicates that the planet's orbit is aligned with the star's rotational axis ($\lambda \lt 14^\circ$) and suggests a stellar rotational period of 15.1 ± 0.6 days. The K2 light curve reveals a rotational modulation with a period of 13.6 ± 1.6 days, which is consistent with the period determined from starspots. There are no significant transit-timing variations, and thus no evidence of any additional planet in the system. Given the pronounced rotational modulation, we are only able to place an upper limit of 100 parts per million for any phase-curve modulations and the secondary eclipse

Starspots on WASP-107 and pulsations of WASP-118

By analysing the K2 short-cadence photometry, we detect starspot occultation events in the light curve of WASP-107, the host star of a warm-Saturn exoplanet. WASP-107 also shows a rotational modulation with a period of 17.5 ± 1.4 d. Given that the rotational period is nearly three times the planet’s orbital period, one would expect in an aligned system to see starspot occultation events to recur every three transits. The absence of such occultation recurrences suggests a misaligned orbit unless the starspots’ lifetimes are shorter than the star’s rotational period. We also find stellar variability resembling γ Doradus pulsations in the light curve of WASP-118, which hosts an inflated hot Jupiter. The variability is multiperiodic with a variable semi-amplitude of ∼200 ppm. In addition to these findings, we use the K2 data to refine the parameters of both systems and report non-detections of transit-timing variations, secondary eclipses and any additional transiting planets. We used the upper limits on the secondary-eclipse depths to estimate upper limits on the planetary geometric albedos of 0.7 for WASP-107b and 0.2 for WASP-118b

Biospecimen Reporting for Improved Study Quality

Human biospecimens are subject to a number of different collection, processing, and storage factors that can significantly alter their molecular composition and consistency. These biospecimen preanalytical factors, in turn, influence experimental outcomes and the ability to reproduce scientific results. Currently, the extent and type of information specific to the biospecimen preanalytical conditions reported in scientific publications and regulatory submissions varies widely. To improve the quality of research utilizing human tissues, it is critical that information regarding the handling of biospecimens be reported in a thorough, accurate, and standardized manner. The Biospecimen Reporting for Improved Study Quality recommendations outlined herein are intended to apply to any study in which human biospecimens are used. The purpose of reporting these details is to supply others, from researchers to regulators, with more consistent and standardized information to better evaluate, interpret, compare, and reproduce the experimental results. The Biospecimen Reporting for Improved Study Quality guidelines are proposed as an important and timely resource tool to strengthen communication and publications around biospecimen-related research and help reassure patient contributors and the advocacy community that the contributions are valued and respected.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/90474/1/bio-2E2010-2E0036.pd

Linking Hydrogen (δ2H) Isotopes in Feathers and Precipitation: Sources of Variance and Consequences for Assignment to Isoscapes

Background: Tracking small migrant organisms worldwide has been hampered by technological and recovery limitations and sampling bias inherent in exogenous markers. Naturally occurring stable isotopes of H (d 2 H) in feathers provide an alternative intrinsic marker of animal origin due to the predictable spatial linkage to underlying hydrologically driven flow of H isotopes into foodwebs. This approach can assess the likelihood that a migrant animal originated from a given location(s) within a continent but requires a robust algorithm linking H isotopes in tissues of interest to an appropriate hydrological isotopic spatio-temporal pattern, such as weighted-annual rainfall. However, a number of factors contribute to or alter expected isotopic patterns in animals. We present results of an extensive investigation into taxonomic and environmental factors influencing feather d 2 H patterns across North America. Principal Findings: Stable isotope data were measured from 544 feathers from 40 species and 140 known locations. For d 2 H, the most parsimonious model explaining 83 % of the isotopic variance was found with amount-weighted growingseason precipitation d 2 H, foraging substrate and migratory strategy. Conclusions/Significance: This extensive H isotopic analysis of known-origin feathers of songbirds in North America and elsewhere reconfirmed the strong coupling between tissue d 2 H and global hydrologic d 2 H patterns, and accounting for variance associated with foraging substrate and migratory strategy, can be used in conservation and research for th

Short-term acclimation in adults does not predict offspring acclimation potential to hypoxia

Abstract The prevalence of hypoxic areas in coastal waters is predicted to increase and lead to reduced biodiversity. While the adult stages of many estuarine invertebrates can cope with short periods of hypoxia, it remains unclear whether that ability is present if animals are bred and reared under chronic hypoxia. We firstly investigated the effect of moderate, short-term environmental hypoxia (40% air saturation for one week) on metabolic performance in adults of an estuarine amphipod, and the fitness consequences of prolonged exposure. We then reared the offspring of hypoxia-exposed parents under hypoxia, and assessed their oxyregulatory ability under declining oxygen tensions as juveniles and adults. Adults from the parental generation were able to acclimate their metabolism to hypoxia after one week, employing mechanisms typically associated with prolonged exposure. Their progeny, however, did not develop the adult pattern of respiratory regulation when reared under chronic hypoxia, but instead exhibited a poorer oxyregulatory ability than their parents. We conclude that species apparently hypoxia-tolerant when tested in short-term experiments, could be physiologically compromised as adults if they develop under hypoxia. Consequently, we propose that the increased prevalence of hypoxia in coastal regions will have marked effects in some species currently considered hypoxia tolerant

Taxonomic and functional turnover are decoupled in European peat bogs

In peatland ecosystems, plant communities mediate a globally significant carbon store. The effects of global environmental change on plant assemblages are expected to be a factor in determining how ecosystem functions such as carbon uptake will respond. Using vegetation data from 56 Sphagnum-dominated peat bogs across Europe, we show that in these ecosystems plant species aggregate into two major clusters that are each defined by shared response to environmental conditions. Across environmental gradients, we find significant taxonomic turnover in both clusters. However, functional identity and functional redundancy of the community as a whole remain unchanged. This strongly suggests that in peat bogs, species turnover across environmental gradients is restricted to functionally similar species. Our results demonstrate that plant taxonomic and functional turnover are decoupled, which may allow these peat bogs to maintain ecosystem functioning when subject to future environmental change

Population dynamics of a salmonella lytic phage and its host : implications of the host bacterial growth rate in modelling

The prevalence and impact of bacteriophages in the ecology of bacterial communities coupled with their ability to control pathogens turn essential to understand and predict the dynamics between phage and bacteria populations. To achieve this knowledge it is essential to develop mathematical models able to explain and simulate the population dynamics of phage and bacteria. We have developed an unstructured mathematical model using delay-differential equations to predict the interactions between a broad-host-range Salmonella phage and its pathogenic host. The model takes into consideration the main biological parameters that rule phage-bacteria interactions likewise the adsorption rate, latent period, burst size, bacterial growth rate, and substrate uptake rate, among others. The experimental validation of the model was performed with data from phage-interaction studies in a 5 L bioreactor. The key and innovative aspect of the model was the introduction of variations in the latent period and adsorption rate values that are considered as constants in previous developed models. By modelling the latent period as a normal distribution of values and the adsorption rate as a function of the bacterial growth rate it was possible to accurately predict the behaviour of the phage-bacteria population. The model was shown to predict simulated data with a good agreement with the experimental observations and explains how a lytic phage and its host bacteria are able to coexist.Financial support was received through the Strategic Project PEst-OE/EQB/LA0023/2013 from the FCT-Fundacao para a Ciencia e Tecnologia (http://www.fct.pt) and the projects "BioHealth - Biotechnology and Bioengineering approaches to improve health quality'', Ref. NORTE-07-0124 FEDER-000027, co-funded by the Programa Operacional Regional do Norte (ON.2 - O Novo Norte), QREN, FEDER and "Consolidating Research Expertise and Resources on Cellular and Molecular Biotechnology at CEB/IBB'', Ref. FCOMP-01-0124-FEDER-027462. Silvio B. Santos was supported by the grant SFRH/BPD/75311/2010 and Carla Carvalho was supported by the grant SFRH/BPD/79365/2011 both from the FCT-Fundacao para a Ciencia e Tecnologia (http://www.fct.pt). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Thermal emission of WASP-48b in the K <inf>s</inf> -band

We report a detection of thermal emission from the hot Jupiter WASP-48b in the Ks-band. We used the Wide-field Infra-red Camera on the 3.6-m Canada-France Hawaii Telescope to observe an occultation of the planet by its host star. From the resulting occultation lightcurve we find a planet-to-star contrast ratio in the Ks-band of 0.136 ± 0.014%, in agreement with the value of 0.109 ± 0.027% previously determined. We fit the two Ks-band occultation lightcurves simultaneously with occultation lightcurves in the H-band and the Spitzer 3.6- and 4.5-μm bandpasses, radial velocity data, and transit lightcurves. From this, we revise the system parameters and construct the spectral energy distribution (SED) of the dayside atmosphere. By comparing the SED with atmospheric models, we find that both models with and without a thermal inversion are consistent with the data. We find the planet’s orbit to be consistent with circular (e &lt; 0.072 at 3σ).</jats:p