Conservation and ecology of the hazel dormouse, Muscardinus avellanarius

Conservation biologists require information on the distribution, ecology, behaviour and genetic diversity of endangered species in order to identify threatened populations, determine which mechanisms are driving populations closer to extinction, and design appropriate mitigating solutions. The hazel dormouse, Muscardinus avellanarius, is declining across much of its northern range. Dormice are detrimentally affected by habitat degradation, loss and fragmentation. Despite extensive studies and conservation work on hazel dormice, there remain many gaps in our understanding. This thesis aims to fill some of those gaps. Hazel dormice are elusive, and therefore difficult to monitor in the wild. I demonstrate the utility of novel monitoring techniques for the rapid determination of dormouse presence, and provide algorithms for the objective verification of species identity from small mammal footprints. I design and utilise genetic microsatellite markers to investigate molecular ecology in this species. In one of the first studies of hazel dormouse population genetics, I describe high levels of population differentiation and genetic isolation across the southwest UK range. I find a powerful signal of reduction in genetic diversity, and an increase in differentiation between core and peripheral populations. I consider rival hypotheses for the mechanisms driving this population genetic pattern, and place the results in the context of conservation strategies for UK dormice. Further, I use molecular data to investigate the prevalence of multiple paternity in wild dormouse populations. Results contradict a recent estimate of very high rates of polyandry, but remain high at 50%. I investigate the effect of food availability on the hibernation behaviour of dormice. My findings, which demonstrate dormice are variable and flexible in their response to winter diet, increases our understanding of the trade-offs dormice must make in order to survive winter periods. I hope that the research undertaken for this thesis will add to the understanding and conservation of an iconic British mammal, ultimately contributing to the persistence of this species.Peoples Trust for Endangered Specie

Active habitat selection by Capitella sp. I larvae. II. Multiple-choice experiments in still water and flume flow

Experiments on larval settlement of the opportunistic polychaete, Capitella sp. I, using three natural sediment treatments from the Buzzards Bay area (organic-rich mud from Sippewissett Marsh, organic-rich mud from New Bedford Harbor and low-organic sand from off the Weepecket Islands), and a glass bead mixture similar in grain size distribution to the New Bedford Harbor mud, were carried out in still water and two flume flows (near-surface velocities of 5 cm s−1 and 15 cm s−1; boundary-shear velocities of 0.26 cm s−1 and 0.64 cm s−1). For all three flow conditions the larvae settled in significantly greater numbers in the two mud treatments than in the glass beads. In some experiments there was significant discrimination between one or both mud treatments and sand. There was significantly higher settlement in sand than in glass beads in two of three experiments in both slow and fast flow. There was no difference in the ability of larvae to discriminate between the sediment treatments in the slow and fast flow. Strong row and column effects in the settlement of larvae in flow experiments (row 1 at the leading edge and column 4 toward the inner wall of the flume having the highest settlement) lend support to a model of interaction between larval swimming behavior and near-bottom flow. Larvae that were not offered a settlement cue for 3–6 d showed no diminution in their subsequent settlement rate or capacity for habitat selection in fast flow. Capitella sp. I larvae are adapted to contribute to the large, local population increases that characterize the species by virtue of being competent to settle immediately after hatching. Once they are mixed up into the water column, however, their capacity for postponing metamorphosis and their habitat selectivity will promote dispersal and discriminate settlement in organic-rich patches

Genotypic and phenotypic spectrum of pyridoxine-dependent epilepsy (ALDH7A1 deficiency)

Pyridoxine-dependent epilepsy was recently shown to be due to mutations in the ALDH7A1 gene, which encodes antiquitin, an enzyme that catalyses the nicotinamide adenine dinucleotide-dependent dehydrogenation of L-{alpha}-aminoadipic semialdehyde/L-{Delta}1-piperideine 6-carboxylate. However, whilst this is a highly treatable disorder, there is general uncertainty about when to consider this diagnosis and how to test for it. This study aimed to evaluate the use of measurement of urine L-{alpha}-aminoadipic semialdehyde/creatinine ratio and mutation analysis of ALDH7A1 (antiquitin) in investigation of patients with suspected or clinically proven pyridoxine-dependent epilepsy and to characterize further the phenotypic spectrum of antiquitin deficiency. Urinary L-{alpha}-aminoadipic semialdehyde concentration was determined by liquid chromatography tandem mass spectrometry. When this was above the normal range, DNA sequencing of the ALDH7A1 gene was performed. Clinicians were asked to complete questionnaires on clinical, biochemical, magnetic resonance imaging and electroencephalography features of patients. The clinical spectrum of antiquitin deficiency extended from ventriculomegaly detected on foetal ultrasound, through abnormal foetal movements and a multisystem neonatal disorder, to the onset of seizures and autistic features after the first year of life. Our relatively large series suggested that clinical diagnosis of pyridoxine dependent epilepsy can be challenging because: (i) there may be some response to antiepileptic drugs; (ii) in infants with multisystem pathology, the response to pyridoxine may not be instant and obvious; and (iii) structural brain abnormalities may co-exist and be considered sufficient cause of epilepsy, whereas the fits may be a consequence of antiquitin deficiency and are then responsive to pyridoxine. These findings support the use of biochemical and DNA tests for antiquitin deficiency and a clinical trial of pyridoxine in infants and children with epilepsy across a broad range of clinical scenarios

Demographic Factors Associated With Prevalence Of Antibody To Sin Nombre Virus In Deer Mice In The Western United States

We used long-term data collected for up to 10 yr (1994–2004) at 23 trapping arrays (i.e., webs and grids) in Arizona, Colorado, Montana, and New Mexico to examine demographic factors known or suspected to be associated with risk of infection with Sin Nombre virus (SNV) in its natural host, the deer mouse (Peromyscus maniculatus). Gender, age (mass), wounds or scars, season, and local relative population densities were statistically associated with the period prevalence of antibody (used as a marker of infection) to SNV in host populations. Nevertheless, antibody prevalence and some of the risk factors associated with antibody prevalence, such as relative population density, gender bias, and prevalence of wounding, varied significantly among sites and even between nearby trapping arrays at a single site. This suggests that local micrositespecific differences play an important role in determining relative risk of infection by SNV in rodents and, consequently, in humans. Deer mouse relative population density varied among sites and was positively and statistically associated with infection prevalence, an association that researchers conducting shorter-term studies failed to demonstrate. Both wounding and antibody prevalence increased with mass class in both males and females; this increase was much more pronounced in males than in females and wounding was more frequent in adult males than in adult females. Prevalence of wounding was greatest among seropositive deer mice, regardless of mass class, but many deer mice without detectable wounds or scars eventually became infected. Many of these patterns, which will be useful in the development of predictive models of disease risk to humans, were only detected through the application of data collected over a long (10-yr) period and with abundant replication

Measuring the State of Disaster Philanthropy 2015: Data to Drive Decisions

Jointly produced by Foundation Center and the Center for Disaster Philanthropy, Measuring the State of Disaster Philanthropy 2015: Data to Drive Decisions analyzes funding trends for disasters and humanitarian crises in 2013. In addition to examining U.S. foundation funding, this second annual report integrates other disaster-related funding data, including bilateral and multilateral aid, corporate giving, and online giving, to paint a more detailed picture of how institutional philanthropy is situated within the broader disaster funding landscape. Collectively, this report, along with the dashboard and mapping platform, provides donors, practitioners, and other stakeholders with in-depth information on funding flows for disasters and humanitarian crises. Explore more at disasterphilanthropy.org

Genotypic and phenotypic spectrum of pyridoxine-dependent epilepsy (ALDH7A1 deficiency)

Pyridoxine-dependent epilepsy was recently shown to be due to mutations in the ALDH7A1 gene, which encodes antiquitin, an enzyme that catalyses the nicotinamide adenine dinucleotide-dependent dehydrogenation of l-α-aminoadipic semialdehyde/l-Δ1-piperideine 6-carboxylate. However, whilst this is a highly treatable disorder, there is general uncertainty about when to consider this diagnosis and how to test for it. This study aimed to evaluate the use of measurement of urine l-α-aminoadipic semialdehyde/creatinine ratio and mutation analysis of ALDH7A1 (antiquitin) in investigation of patients with suspected or clinically proven pyridoxine-dependent epilepsy and to characterize further the phenotypic spectrum of antiquitin deficiency. Urinary l-α-aminoadipic semialdehyde concentration was determined by liquid chromatography tandem mass spectrometry. When this was above the normal range, DNA sequencing of the ALDH7A1 gene was performed. Clinicians were asked to complete questionnaires on clinical, biochemical, magnetic resonance imaging and electroencephalography features of patients. The clinical spectrum of antiquitin deficiency extended from ventriculomegaly detected on foetal ultrasound, through abnormal foetal movements and a multisystem neonatal disorder, to the onset of seizures and autistic features after the first year of life. Our relatively large series suggested that clinical diagnosis of pyridoxine dependent epilepsy can be challenging because: (i) there may be some response to antiepileptic drugs; (ii) in infants with multisystem pathology, the response to pyridoxine may not be instant and obvious; and (iii) structural brain abnormalities may co-exist and be considered sufficient cause of epilepsy, whereas the fits may be a consequence of antiquitin deficiency and are then responsive to pyridoxine. These findings support the use of biochemical and DNA tests for antiquitin deficiency and a clinical trial of pyridoxine in infants and children with epilepsy across a broad range of clinical scenario

Facilitating tree-ring dating of historic conifer timbers using Blue Intensity

The Scottish pine network expansion has been an ongoing task since 2006 and funding must be acknowledged to the following projects: EU project ‘Millennium’ (017008-2), Leverhulme Trust project ‘RELiC: Reconstructing 8000 years of Environmental and Landscape change in the Cairngorms (F/00268/BG)’, the Native Oak and Pine project or ‘NOAP’ (Historic Scotland) and the NERC project ‘SCOT2K:Reconstructing 2000 years of Scottish climate from tree rings (NE/K003097/1)’. Further PhD funding for Milos Rydval is acknowledged from The Carnegie Trust.Dendroarchaeology almost exclusively uses ring-width (RW) data for dating historical structures and artefacts. Such data can be used to date tree-ring sequences when regional climate dominates RW variability. However, the signal in RW data can be obscured due to site specific ecological influences (natural and anthropogenic) that impact crossdating success. In this paper, using data from Scotland, we introduce a novel tree-ring parameter (Blue Intensity – BI) and explore its utility for facilitating dendro historical dating of conifer samples. BI is similar to latewood density as they both reflect the combined hemicellulose, cellulose and lignin content in the latewood cell walls of conifer species and the amount of these compounds is strongly controlled, at least for trees growing in temperature limited locations, by late summer temperatures. BI not only expresses a strong climate signal, but is also less impacted by site specific ecological influences. It can be concurrently produced with RW data from images of finely sanded conifer samples but at a significantly reduced cost compared to traditional latewood density. Our study shows that the probability of successfully crossdating historical samples is greatly increased using BI compared to RW. Furthermore, due to the large spatial extent of the summer temperature signal expressed by such data, a sparse multi-species conifer network of long BI chronologies across Europe could be used to date and loosely provenance imported material.PostprintPeer reviewe

Best Practices for Virtual Care: A Consensus Statement From the Canadian Rheumatology Association

Objective. To develop best practice statements for the provision of virtual care in adult and pediatric rheumatology for the Canadian Rheumatology Association\u27s (CRA) Telehealth Working Group (TWG). Methods. Four members of the TWG representing adult, pediatric, university-based, and community rheumatology practices defined the scope of the project. A rapid literature review of existing systematic reviews, policy documents, and published literature and abstracts on the topic was conducted between April and May 2021. The review informed a candidate set of 7 statements and a supporting document. The statements were submitted to a 3-round (R) modified Delphi process with 22 panelists recruited through the CRA and patient advocacy organizations. Panelists rated the importance and feasibility of the statements on a Likert scale of 1-9. Statements with final median ratings between 7-9 with no disagreement were retained in the final set. Results. Twenty-one (95%) panelists participated in R1, 15 (71%) in R2, and 18 (82%) in R3. All but 1 statement met inclusion criteria during R1. Revisions were made to 5/7 statements following R2 and an additional statement was added. All statements met inclusion criteria following R3. The statements addressed the following themes in the provision of virtual care: adherence to existing standards and regulations, appropriateness, consent, physical examination, patient-reported outcomes, use in addition to in-person visits, and complex comanagement of disease. Conclusion. The best practice statements represent a starting point for advancing virtual care in rheumatology. Future educational efforts to help implement these best practices and research to address identified knowledge gaps are planned

Mutations in SLC25A22: hyperprolinaemia, vacuolated fibroblasts and presentation with developmental delay

Mutations in SLC25A22 are known to cause neonatal epileptic encephalopathy and migrating partial seizures in infancy. Using whole exome sequencing we identified four novel SLC25A22 mutations in six children from three families. Five patients presented clinical features similar to those in the literature including hypotonia, refractory neonatal‐onset seizures and developmental delay. However, the sixth patients presented atypically with isolated developmental delay, developing late‐onset (absence) seizures only at 7 years of age. Abnormal metabolite levels have not been documented in the nine patients described previously. One patient in our series was referred to the metabolic clinic because of persistent hyperprolinaemia and another three had raised plasma proline when tested. Analysis of the post‐prandial plasma amino acid response in one patient showed abnormally high concentrations of several amino acids. This suggested that, in the fed state, when amino acids are the preferred fuel for the liver, trans‐deamination of amino acids requires transportation of glutamate into liver mitochondria by SLC25A22 for deamination by glutamate dehydrogenase; SLC25A22 is an important mitochondrial glutamate transporter in liver as well as in brain. Electron microscopy of patient fibroblasts demonstrated widespread vacuolation containing neutral and phospho‐lipids as demonstrated by Oil Red O and Sudan Black tinctorial staining; this might be explained by impaired activity of the proline/pyrroline‐5‐carboxylate (P5C) shuttle if SLC25A22 transports pyrroline‐5‐carboxylate/glutamate‐γ‐semialdehyde as well as glutamate

Here today, here tomorrow: Beached timber in Gabon, a persistent threat to nesting sea turtles

notes:types: JOURThe African country of Gabon has seen decadal increases in commercial logging. An unforeseen consequence of this has been that many coastal areas, including several National Parks and Reserves, have suffered severe pollution from beached timber. This has the potential to adversely affect nesting sea turtles, particularly the leatherback turtle (Dermochelys coriacea) for which Gabon constitutes the world’s largest rookery. In this study, we analyse aerial survey data (2003, 2007 and 2011) to determine the temporal persistence and spatial extent of beached timber, and by integrating spatial data on nesting, ascertain regions where beached timber poses the greatest threat to nesting leatherback turtles. There was no marked difference in the number of beached logs recorded across the study area during the period, with 15,160, 13,528 and 17,262 logs recorded in the three years, respectively. There was, however, a significant difference in abundance of beached logs among geographical areas. Analysis highlighted two coastal areas where nesting leatherback turtles were likely to be at greatest risk from beached timber. At one such site, Kingere, within Pongara National Park, where both logs and turtle densities are high, monitoring in 2006/2007 and 2007/2008 suggested that between 1.6% and 4.4% of leatherback turtles could be entrapped at this site. Given the dynamic nature of Gabon’s coastal environment, and the potential limitations of aerial surveys, densities of beached timber could be greater than this analysis reveals. We also propose, that despite recent export restrictions of whole logs, their environmental persistence potentially represents a long-term problem