An algorithm to represent inbreeding trees

Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population (Yengo et al., 2019). This result brings our attention again to a math problem related to inbreeding family trees and diversity. Groups with a finite number of individuals could give a variety of genetic relationships. In previous works (Caruso and Jarne, 2015; Caruso and Jarne, 2014; Jarne and Caruso, 2019), we have addressed the issue of building inbreeding trees for biparental reproduction using Markovian models. Here, we extend these studies by presenting an algorithm to generate and represent inbreeding trees with no overlapping generations. We explicitly assume a two-gender reproductory scheme, and we pay particular attention to the links between nodes. We show that even for a simple case with a relatively small number of nodes in the tree, there are a large number of possible ways to rearrange the links between generations. We present an open-source python code to generate the tree graph, the adjacency matrix, and the histogram of the links for each different tree representation. We show how this mapping reflects the difference between tree realizations, and how valuable information may be extracted upon inspection of these matrices. The algorithm includes a feature to average several tree realizations, obtain the connectivity distribution, and calculate the mean value and standard deviation. We used this feature to compare trees with a different number of generations and nodes. The code presented here, available in Git-Hub, may be easily modified to be applied to other areas of interest involving connections between individuals, extend the study to add more characteristics of the different nodes, etc.Instituto de Física de Líquidos y Sistemas Biológico

A novel promising laccase from the psychrotolerant and halotolerant Antarctic marine Halomonas sp. M68 strain

Microbial communities inhabiting the Antarctic Ocean show psychrophilic and halophilic adaptations conferring interesting properties to the enzymes they produce, which could be exploited in biotechnology and bioremediation processes. Use of cold- and salt-tolerant enzymes allows to limit costs, reduce contaminations, and minimize pretreatment steps. Here, we report on the screening of 186 morphologically diverse microorganisms isolated from marine biofilms and water samples collected in Terra Nova Bay (Ross Sea, Antarctica) for the identification of new laccase activities. After primary screening, 13.4 and 10.8% of the isolates were identified for the ability to oxidize 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) and the dye azure B, respectively. Amongst them, the marine Halomonas sp. strain M68 showed the highest activity. Production of its laccase-like activity increased six-fold when copper was added to culture medium. Enzymatic activity-guided separation coupled with mass spectrometry identified this intracellular laccase-like protein (named Ant laccase) as belonging to the copper resistance system multicopper oxidase family. Ant laccase oxidized ABTS and 2,6-dimethoxy phenol, working better at acidic pHs The enzyme showed a good thermostability, with optimal temperature in the 40–50°C range and maintaining more than 40% of its maximal activity even at 10°C. Furthermore, Ant laccase was salt- and organic solvent-tolerant, paving the way for its use in harsh conditions. To our knowledge, this is the first report concerning the characterization of a thermo- and halo-tolerant laccase isolated from a marine Antarctic bacterium

People and jaguars: New insights into the role of social factors in an old conflict

Throughout its range in Latin America, the jaguar Panthera onca is threatened by habitat loss and fragmentation, and by conflict as a result of coexistence with people. This Near Threatened species is a top predator, and is often illegally hunted. Understanding people's attitudes and perceptions and the factors that could influence them is crucial for the conservation of this species. In this study we assess how knowledge, attitudes and perceptions among people in northern Argentina regarding jaguars vary depending on their level of education, age and occupation. We interviewed 810 people living in and around 10 protected areas in northern Argentina. Positive perceptions and attitudes towards the jaguar were associated with economic benefits that people may receive from the species' presence, such as income from tourism. Unexpectedly, higher levels of formal education were not associated with more positive attitudes and perceptions. Negative attitudes and perceptions towards the species were determined by fear; people see jaguars as a threat to their lives. This study shows that the socio-economic factors that affect the level of tolerance towards jaguars are not related only to economic losses. Our findings provide information for the design, implementation and evaluation of jaguar conservation projects in Argentina.Fil: Caruso, María Flavia. Administración de Parques Nacionales. Delegación Regional del Noroeste; Argentina. Jaguares En El Límite; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; ArgentinaFil: Perovic, Pablo Gastón. Jaguares En El Límite; Argentina. Administración de Parques Nacionales. Delegación Regional del Noroeste; ArgentinaFil: Tálamo, Andrés. Universidad Nacional de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta. Instituto de Bio y Geociencias del NOA. Universidad Nacional de Salta. Facultad de Ciencias Naturales. Museo de Ciencias Naturales. Instituto de Bio y Geociencias del NOA; ArgentinaFil: Trigo, Carolina Beatriz. Universidad Nacional de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta. Instituto de Bio y Geociencias del NOA. Universidad Nacional de Salta. Facultad de Ciencias Naturales. Museo de Ciencias Naturales. Instituto de Bio y Geociencias del NOA; ArgentinaFil: Andrade Díaz, María S.. Universidad Nacional de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta. Instituto de Bio y Geociencias del NOA. Universidad Nacional de Salta. Facultad de Ciencias Naturales. Museo de Ciencias Naturales. Instituto de Bio y Geociencias del NOA; ArgentinaFil: Marás, Gustavo Arnaldo. Universidad Nacional de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta. Instituto de Bio y Geociencias del NOA. Universidad Nacional de Salta. Facultad de Ciencias Naturales. Museo de Ciencias Naturales. Instituto de Bio y Geociencias del NOA; ArgentinaFil: Saravia, Diego. Universidad Nacional de Salta; ArgentinaFil: Sillero-Zubiri, Claudio. University of Oxford; Reino Unido. The Recanati-Kaplan Centre; Reino Unido. Born Free Foundation; Reino UnidoFil: Altrichter, Mariana. Prescott college; Estados Unido

Metabolic inflexibility is a feature of women with polycystic ovary syndrome and is associated with both insulin resistance and hyperandrogenism

Context: Metabolic inflexibility, ie, the impaired ability of the body to switch from fat to carbohydrate oxidation under insulin-stimulated conditions, is associated with insulin resistance. This alteration in metabolic plasticity can lead to organ dysfunction and is considered a key issue among the abnormalities of the metabolic syndrome. It is still unknown whether this phenomenon occurs in women with polycystic ovary syndrome (PCOS). Objective: Our objective was to examine whether metabolic inflexibility is a feature of PCOS women and whether hyperandrogenism may contribute to this phenomenon. Design and Patients: Eighty-nine Caucasian women with PCOS were submitted to hyperinsulinemic-euglycemic clamp. Respiratory exchange ratios were evaluated at baseline and during hyperinsulinemia by indirect calorimetry to quantify substrate oxidative metabolism. Total testosterone was measured by liquid chromatography mass spectrometry and free testosterone by equilibrium dialysis. Setting: Outpatients were seen in a tertiary care academic center. Main Outcome Measure: Metabolic flexibility was assessed by the change in respiratory quotient upon insulin stimulation. Results: Sixty-five of the 89 PCOS women(73%) had increased serum free testosterone, 68 (76%) were insulin resistant, and 62 (70%) had an impaired metabolic flexibility. Comparison of hyperandrogenemic and normoandrogenemic women showed that the 2 subgroups were of similar age but differed in terms of several anthropometric and metabolic features. In particular, hyperandrogenemic women had greater body mass index (32.9 +/- 1.0 vs 24.7 +/- 0.9 kg/m(2), P < .001) and lower glucose utilization during the clamp (9.2 +/- 0.4 vs 10.9 +/- 0.7 mg/kg fat-free mass . min, P < .023) and metabolic flexibility (0.09 +/- 0.06 vs 0.12 +/- 0.01, P < .014). In univariate analysis, metabolic flexibility was associated with several anthropometric, endocrine, and metabolic features. In multivariate analysis, this feature was directly associated with baseline respiratory quotient and insulin sensitivity and inversely with free testosterone and free fatty acids concentrations under insulin suppression (R-2 = 0.634, P < .001). Conclusions: Metabolic inflexibility is a feature of PCOS women. Both insulin resistance and androgen excess might contribute to this abnormality

Are white-lipped peccaries from Argentinean Yungas looking to a promising future?

The white-lipped peccary (Tayassu pecari) is considered a key species for its role as an ecosystem engineer. Given their important ecological function, there is a great concern in the scientific community regarding the many reports of disappearances or great abundance reductions throughout its distribution (from southern Mexico to northern Argentina). Based on an extensive survey effort, we report new data of presence of WLP after a period of no detections in the Argentine Yungas. The study was conducted in the Yungas ecoregion, provinces of Jujuy and Salta, Argentina. Data was collected from camera trap, direct sightings and footprints during 2013–2021. From a total of 30,186 trap nights, we obtained 8 WLP detections. There were no detections before 2017, while as of 2018 there was at least one camera trap record in each of the years. Additionally, opportunistic records were obtained yearly from 2019 to 2021. The period without detections could be related to a period of a population cycle, as suggested in different regions of America during the last century, being disease the most likely cause. These cycles generally follow a pattern of a rapid population decline, a period of absence or low abundance followed by slow population growth. We believe that if the trend continues and the number of detections increases, we could be facing the early stages of the increase phase in the WLP population cycle in the Argentine Yungas.Facultad de Ciencias Naturales y Muse

Reversal of gastrointestinal carcinoma-induced immunosuppression and induction of antitumoural immunity by a combination of cyclophosphamide and gene transfer of IL-12

Immunotherapy-based strategies for gastrointestinal carcinomas (GIC) have been exploited so far, but these approaches have to face strong mechanisms of immune escape induced by tumours. We previously demonstrated that sub-therapeutic doses of an adenovirus expressing IL-12 genes (AdIL-12) mediated a potent antitumour effect against subcutaneous (s.c.) colorectal carcinomas (CRC) in mice pre-treated with low doses of cyclophosphamide (Cy). In our study we used this combination to assess its impact on the immunosuppressive microenvironment. In s.c. CRC model we demonstrated that non-responder mice failed to decrease Tregs in tumour, spleen and peripheral blood. Reconstitution of Tregs into tumour-bearing mice treated with combined therapy abolished the antitumoural effect. In addition, Cy + AdIL-12 modified Tregs functionality by inhibiting the in vitro secretion of IL-10 and TGF-β and their ability to inhibit dendritic cells activation. Combined treatment decreased the number of myeloid-derived suppressor cells (MDSCs) in comparison to non-treated mice and, interestingly, administration of Tregs restored splenic MDSCs population. Furthermore, combined therapy potently generated specific cytotoxic IFN-γ-secreting CD4+ T cells able to eradicate established CRC tumours after adoptive transfer. Finally, we evaluated the combination on disseminated CRC and pancreatic carcinoma (PC). Cy + AdIL-12 were able to eradicate liver metastatic CRC (47%) and PC tumour nodules (40%) and to prolong animal survival. The results of this study support the hypothesis that Cy + AdIL-12 might be a valid immunotherapeutic strategy for advanced GIC.Fil: Malvicini, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Ingolotti, Mariana. Universidad Austral; ArgentinaFil: Piccioni, Flavia Valeria. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: García, Mariana Gabriela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Bayo Fina, Juan Miguel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Atorrasagasti, María Catalina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Alaniz, Laura Daniela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Aquino, Jorge Benjamin. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; ArgentinaFil: Espinoza, Jaime A.. Universidad Adolfo Ibañez; Chile. Universidad de La Frontera; ChileFil: Gidekel, Manuel. Universidad Adolfo Ibañez; ChileFil: Scharovsky, Olga Graciela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Rosario. Facultad de Ciencias Medicas. Instituto de Genetica Experimental; ArgentinaFil: Matar, Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Rosario. Facultad de Ciencias Medicas. Instituto de Genetica Experimental; ArgentinaFil: Mazzolini Rizzo, Guillermo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Austral; Argentin

Efecto de la distribución del diámetro de la fibra sobre el tipo y frecuencia de fibras objetables en vellones mixtos. 1- Aspectos físicos (Programa Red Supprad)

Las fibras pertenecientes a los Camélidos y a los Caprinos reciben entre otros nombres el de fibras lujosas. Los atributos y caracteres que le confieren valor a estas fibras son: suavidad, brillo, escasez o rareza, precio alto, carácter de misterioso, romántico, elegante y exclusivo. Siendo suavidad y brillo o lustrosidad los únicos atributos que solo depende de la fibra cruda en sí. La expresión ´suave´ textilmente hablando se reconoce cómo suavidad al tacto o ´mano´ y reúne en sí mismo varios atributos: confort sobre la piel (picazón), rigidez, lisura, suavidad. El término ´prickle´ o picazón (prurito) se aplica solo para las prendas que se usan en contacto con la piel (directa o indirectamente) y cada vez resulta más importante. Diversos estudios han demostrado que la sensación de picazón o prurito proviene de las fibras gruesas de la cola derecha de la distribución del diámetro de la fibra (´borde grueso´), de ahí la importancia de estudiar esta distribución en el contexto físico primero y en el genético luego. Se hipotetiza que: La distribución del diámetro de la fibra puede ser evaluada correctamente con el desvío estándar y el coeficiente de variación del diámetro, desde el punto de vista cuantitativo y por la morfología (tipo de rizo), desde el punto de vista cualitativo y esta determinación permite predecir la suavidad al tacto del hilo y/o tejido a confeccionar. Para testar esta hipótesis se han formulado los siguientes objetivos generales: Determinar la relación entre la variación o dispersión del diámetro de la fibra y parámetros estadísticos cuantitativos en fibra de Camélidos y Caprinos. Determinar la relación entre la variación o dispersión del diámetro de la fibra y la morfología de la fibra de Camélidos y Caprinos. Determinar la relación entre la variación del diámetro y la morfología de la fibra y la suavidad al tacto del hilo y/o tejido producido Camélidos y Caprinos. El proyecto se desarrollará en el contexto del programa SUPPRAD y se utilizará la información capturada en los trabajos de campo con caprinos criollos, ovinos Merino y Camélidos Sudamericanos, tratando de obtener una respuesta formal a la disyuntiva de homogeneizar la distribución de tipos de fibras y diámetros por vía mecánica (´descerdado´), selección genética, o una combinación de ambas.Fil: Frank, Eduardo Narciso. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Hick, Michel Victor Hubert. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; Argentin

Sustentabilidad productiva de pequeños rumiantes en áreas desfavorecidas (SUPPRAD). Estudios de genética animal

Este proyecto se ubica dentro del programa SUPPRAD que trabaja en red a lo largo del país en áreas desfavorecidas y con pequeños productores. En el contexto del uso sustentable de los recursos naturales y de promoción del desarrollo, el mejoramiento genético es una herramienta fundamental porque aporta beneficios a ambos componentes. Por eso se ha tomado para este proyecto como objetivos generales estudiar las estrategias de implementación de programas de mejoramiento genético de fibra en rumiantes menores y Camélidos en las áreas desfavorecidas donde actúa el programa. Se pretende aquí identificar genotipos de mayor eficiencia productiva en fibra en rumiantes menores y Camélidos y aplicar los conocimientos adquiridos en programas de mejoramiento productivo que tiendan a mejorar el ingreso del pequeño productor para finalmente contribuir al desarrollo de producciones sustentables en distintas regiones del país. Esto se va a desarrollar a través de estudios de estructura poblacional a nivel de pequeños productores de Llamas de la provincia de Jujuy, Córdoba, La Pampa y Río Negro; productores trashumantes de caprinos criollos con aptitud de fibra del área noroeste de Neuquén; pequeños productores de la pampa de Olaen (Córdoba). Por otra parte y a partir de los planteles experimentales establecidos en los campos de productores se organiza la toma de registros de las distintas variables a describir genéticamente: peso de vellón, peso de parche de vellón (predictor del peso de vellón), diámetro medio de las fibras, coeficientes de variación, frecuencia de rizos, rinde al descerdado (vellones mixtos), frecuencias y diámetro de tipos de fibra y tipos de folículos en cortes de piel. Por otra parte se diseñarán objetivos de mejoramiento para las distintas especies a partir de la información genética generada en este proyecto y la información económica recopilada a partir de informaciones de mercado y de los resultados de ensayos de textiles específicos. Como resultado final se pretende elaborar estrategias de abordajes de los mejoramientos productivos de las distintas áreas en estudio y de los distintos tipos de productores involucrados.Fil: Frank, Eduardo Narciso. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Hick, Michel Victor Hubert. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Molina, María Gabriela de los Ángeles. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; Argentin