PBP4: A New Perspective on Staphylococcus aureus β-Lactam Resistance.

β-lactam antibiotics are excellent drugs for treatment of staphylococcal infections, due to their superior efficacy and safety compared to other drugs. Effectiveness of β-lactams is severely compromised due to resistance, which is widespread among clinical strains of Staphylococcus aureus. β-lactams inhibit bacterial cells by binding to penicillin binding proteins (PBPs), which perform the penultimate steps of bacterial cell wall synthesis. Among PBPs of S. aureus, PBP2a has received the most attention for the past several decades due to its preeminent role in conferring both high-level and broad-spectrum resistance to the entire class of β-lactam drugs. Studies on PBP2a have thus unraveled incredible details of its mechanism of action. We have recently identified that an uncanonical, low molecular weight PBP of S. aureus, PBP4, can also provide high-level and broad-spectrum resistance to the entire class of β-lactam drugs at a level similar to that of PBP2a. The role of PBP4 has typically been considered not so important for β-lactam resistance of S. aureus, and as a result its mode of action remains largely unknown. In this article, we review our current knowledge of PBP4 mediating β-lactam resistance in S. aureus

Generalized fractional maxwell model : parameter estimation of a viscoelastic material

In this paper, we show how fractional viscoelastic models can be efficient in the modeling of linear viscoelastic behavior, increasing the fitting accuracy of classic generalized viscoelastic models, such as the Generalized Maxwell model. Experimental data (Loss and Storage modulus in the frequency domain) were retrieved from a Dynamic Mechanical Analysis test considering Carbon Fibre Reinforced Polymer samples. The estimated parameters, for the derived fractional viscoelastic models, were obtained through numerical optimization techniques that minimize the difference between model-predicted values and experimental data. An excellent correlation between analytical and experimental results was observed, minimizing numerical instabilities found on a previous work, for the same experimental setup.This work was financed by FEDER funds through COMPETE-Programa Operacional Fatores de Competitividade and by portuguese funds through FCT-Fundação para a Ciência e a Tecnologia within projects PEst-C/MAT/UI0013/ 2011

Parameter estimation of viscoelastic materials : a test case with different optimization strategies

In this work, and based on numerical optimization techniques, constitutive parameters for viscoelastic materials are determined using a inverse problem formulation. The optimization methodology is based on experimental results obtained in the frequency domain, for a CFRP-Carbon Fibre Reinforced Polymer, through DMA-Dynamic Mechanical Analysis. The relaxation modulus of viscoelastic materials is given by a summation of decaying exponentiating functions, known as Prony series. Prony series, in time domain, are normally used to determine constitutive parameters for viscoelastic materials. In this paper, using the Fourier transform of the time domain Prony series, a nonlinear constrained least square problem based on Prony series representations of storage and loss modulus, for the considered material, is analyzed. A case study considering the estimation of 2N viscoelastic parameters, N = 1,2, ···11, is taken as a benchmark. The nonlinear constrained least square problems are solved using global and local optimization solvers. The computational results as well as the main conclusion are shown

A modified fractional zener model to describe the behaviour of a carbon fibre reinforced polymer

In this work a modified conventional Fractional Zener Model is deduced and applied to estimate the viscoelastic constitutive parameters of a Carbon Fibre Reinforced Polymer. The accuracy of this modified model was studied against conventional Fractional Zener model and Fractional Maxwell model, considering experimental data in the frequency domain. The set of parameters was found by solving a nonlinear constrained least square problem based on the variation of the storage and loss moduli with frequency.This work was financed by FEDER funds through COMPETE (Operational Programme Thematic Factors of Competitiveness) and by portuguese funds through FCT (Foundation for Science and Technology) within the project PEst-C/MAT/UI0013/ 2011

Registering the evolutionary history in individual-based models of speciation

Understanding the emergence of biodiversity patterns in nature is a central problem in biology. Theoretical models of speciation have addressed this question in the macroecological scale, but little has been done to connect microevolutionary processes with macroevolutionary patterns. Knowledge of the evolutionary history allows the study of patterns underlying the processes being modeled, revealing their signatures and the role of speciation and extinction in shaping macroevolutionary patterns. In this paper we introduce two algorithms to record the evolutionary history of populations and species in individual-based models of speciation, from which genealogies and phylogenies can be constructed. The first algorithm relies on saving ancestor–descendant relationships, generating a matrix that contains the times to the most recent common ancestor between all pairs of individuals at every generation (the Most Recent Common Ancestor Time matrix, MRCAT). The second algorithm directly records all speciation and extinction events throughout the evolutionary process, generating a matrix with the true phylogeny of species (the Sequential Speciation and Extinction Events, SSEE). We illustrate the use of these algorithms in a spatially explicit individual-based model of speciation. We compare the trees generated via MRCAT and SSEE algorithms with trees inferred by methods that use only genetic distance between individuals of extant species, commonly used in empirical studies and applied here to simulated genetic data. Comparisons between trees are performed with metrics describing the overall topology, branch length distribution and imbalance degree. We observe that both MRCAT and distance-based trees differ from the true phylogeny, with the first being closer to the true tree than the second.Facultad de Ciencias Naturales y Muse

Improving charge injection and charge transport in CuO-based p-type DSSCs-a quick and simple precipitation method for small CuO nanoparticles

Herein, we introduce a co-precipitation synthesis of CuO, which produces small and uniform nanoparticles (∼12 nm) with a specific surface area of 97.3 m2g-1. The resulting CuO nanoparticles are superior to the commercial ones, which have previously been used to prepare p-type DSSCs. In turn, we compared p-type DSSCs consisting of CuO-based photocathodes based on newly synthesized and commercial nanoparticles. Devices based on new CuO nanoparticles enable higher dye loadings, and, in turn, superior short-circuit current densities and efficiencies. To corroborate our findings, electrochemical impedance spectroscopy and intensity modulated photocurrent spectroscopy assays were conducted, revealing a better charge injection and faster charge transport for those photocathodes featuring the new CuO nanoparticlesThe authors thank the German Science Council (DFG) for the financial support in the framework of the Cluster of Engineering of Advanced Materials (EAM). O.Langmar thanks S. Romeis for the BET measurement

Reduction of Tubulin Expression in Angomonas deanei by RNAi Modifies the Ultrastructure of the Trypanosomatid Protozoan and Impairs Division of Its Endosymbiotic Bacterium

In the last two decades, RNA interference pathways have been employed as a useful tool for reverse genetics in trypanosomatids. Angomonas deanei is a non-pathogenic trypanosomatid that maintains an obligatory endosymbiosis with a bacterium related to the Alcaligenaceae family. Studies of this symbiosis can help us to understand the origin of eukaryotic organelles. The recent elucidation of both the A. deanei and the bacterium symbiont genomes revealed that the host protozoan codes for the enzymes necessary for RNAi activity in trypanosomatids. Here we tested the functionality of the RNAi machinery by transfecting cells with dsRNA to a reporter gene (green fluorescent protein), which had been previously expressed in the parasite and to α-tubulin, an endogenous gene. In both cases, protein expression was reduced by the presence of specific dsRNA, inducing, respectively, a decreased GFP fluorescence and the formation of enlarged cells with modified arrangement of subpellicular microtubules. Furthermore, symbiont division was impaired. These results indicate that the RNAi system is active in A. deanei and can be used to further explore gene function in symbiont-containing trypanosoma tids and to clarify important aspects of symbiosis and cell evolution. This article is protected by copyright. All rights reserved

Paleoparasitology: Perspectives with New Techniques

Paleoparasitology is the study of parasites found in archaeological material. The development of this field of research began with histological identification of helminth eggs in mummy tissues, analysis of coprolites, and recently through molecular biology. An approach to the history of paleoparasitology is reviewed in this paper, with special reference to the studies of ancient DNA identified in archaeological material. Paleoparasitologia: perspectivas com novas técnicas Paleoparasitologia é o estudo de parasitos encontrados em material arqueológico. O desenvolvimento deste campo da pesquisa teve início com a identificação de ovos de helmintos em tecidos mumificados, análise de coprólitos e, recentemente, através da biologia molecular. Neste artigo faz-se uma breve revisão da história da paleoparasitologia com referência especial aos estudos de ADN antigo (ancient DNA) em material arqueológic

Upstream dam impacts on gilded catfish Brachyplatystoma rousseauxii (Siluriformes: Pimelodidae) in the Bolivian Amazon

This paper explores the effects of two run-of-river dams (Jirau and Santo Antônio) built in cascade in the middle Madeira River (Brazil) on the interruption of long-distance migration routes of the gilded catfish (Brachyplatystoma rousseauxii). A participative monitoring system was set up to compare capture by commercial fishers approximately 1500 km upstream ofthe dams in Bolivia, before (1998-2007) and after (2015-2017) dam closure. A significant decrease in gilded catfish catches and in catch per unit effort was observed after dam closure, whereas no significant difference in mean weight was found. Back-estimation of age suggests that the few individuals remaining after dam closure in 2009 are a mixture of old homers that returned upstream before dam closure, and residents hatched after dam closure and trapped in the upper Madeira. Unless fishways in the Madeira River dams improve their efficiency, the gilded catfish might become rare and in danger of regional extinction in the upper Madeira basin in the next few years, negatively affecting river fisheries.Fil: Van Damme, Paul A.. Instituto de Investigación Aplicada de Recursos Acuáticos; Bolivia. Universidad Mayor de San Simón; BoliviaFil: Córdova Clavijo, Leslie. Instituto de Investigación Aplicada de Recursos Acuáticos; BoliviaFil: Baigún, Claudio Rafael M.. Universidad Nacional de San Martín. Instituto de Investigación e Ingeniería Ambiental. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigación e Ingeniería Ambiental; ArgentinaFil: Hauser, Marilia. Universidade Federal de Rondônia; Brasil. Centre National de la Recherche Scientifique. Institut de Recherche pour le Développement; FranciaFil: da Costa Doria, Carolina R.. Centre National de la Recherche Scientifique. Institut de Recherche pour le Développement; Francia. Universidade Federal de Rondônia; BrasilFil: Duponchelle, Fabrice. Universidade Federal de Rondônia; Brasi