UK and EU policy for approval of pesticides suitable for organic systems: Implications for Wales

This study was commissioned by the Welsh Assembly Government (WAG) to review the pesticide approval system in the UK and Europe as far as it affects the use of substances and techniques for crop protection by organic producers in Wales. WAG considers it important that the UK pesticide approval system does not present unnecessary barriers to the development of organic production in Wales. Key Recommendations and scope for further work · WAG should work with the Pesticides Safety Directorate to ensure that the development of pesticide regulatory policy at both National and European level takes full account of the needs of both conventional and organic agriculture and horticulture in the UK. · There is scope for WAG to support the development of a National Pesticide Policy so that regulatory and commercial barriers impeding the development of organic pesticides are minimised. Not only could greater availability of ‘organic pesticides’ have a significant impact on organic production in Wales but there could be important implications for conventional horticulture systems and the use of alternatives to conventional pesticides. · One important regulatory barrier to the registration of ‘organic pesticides’ is the MRL requirement(s) for their approval and this needs to be resolved. Suitable analytical techniques are required to determine firstly whether these substances result in residues, and secondly to identify the breakdown and residue pathways. So far, this issue has not received the attention of any EU Member State. · According to the proposed framework for the 4th Stage Review of EU Pesticides Directive 91/414, notifiers are required to produce a dossier, at their own expense, covering characterisation, human toxicity, ecotoxicity efficacy and other relevant data. The Review includes specific provision for companies notifying the same substance to submit a shared dossier. This will help those businesses (many of which are relatively small companies) to save on the high cost of producing the dossiers. It will also aid the Commission since it will reduce the number of dossiers that have to be considered, and ensure that all the available data is included. WAG should encourage and support the production of collective dossiers; although as yet there is no indication of how this will be done in practice, and further details from the Commission are awaited. · This study has concluded that access to a wider range of ‘organically acceptable pesticides’ would not have a dramatic impact on organic production in Wales. However, in developing an integrated organic policy, WAG should continue to address the pesticides issue. Some of the methods of pest & disease control in organic systems are either physical or multi-cellular e.g. micro-organisms used as biocontrol agents. WAG agri environment policy may provide a vehicle to promote these techniques much more actively. Further, it is important to recognise that while Wales alone is too small to have a major impact on commercial and regulatory pressures, WAG can have an impact by working pro-actively with others to make progress. · There are no published EU or national Member State criteria that can be used to evaluate the acceptability of pesticide substances for organic production. Identifying such criteria and promoting their acceptance at EU level and nationally would allow more active substances to be made available. WAG should work with PSD and others to identify appropriate criteria. · The specific provisions of Article 7 in Annex 2(b) of the Organic Regulation (2092/91) place potential barriers to the adoption of organically acceptable substances for crop protection. There are a number of potentially useful substances currently not included in the Organic Regulation e.g. potassium bicarbonate. WAG should work with PSD and others to identify such substances and support the production of appropriate dossiers. WAG could also encourage further dialogue between the organic sector and Defra to identify amendments in the Organic Regulations to facilitate the inclusion of new pesticides. · Organic pest and disease management is not just a question of inputs but it also relies crucially on advice and extension through initiatives such as Farming Connect and the work of Organic Centre Wales. Long-term commitment to supporting on going advice and extension activities is vital to promote and disseminate best practice in Welsh agriculture and horticulture. · Organic horticulture, vegetable and fruit production systems are particularly sensitive to pest and disease management. Successful control of pests, diseases (and weeds) in these sectors can be critical to the business, and is not assured even when all husbandry and management methods have been effectively applied. Consequently, the use of organically acceptable crop protection methods resulting from future developments (e.g. biopesticides, biological control agents) could have an important role in pest and disease management in these sectors. Both organic and conventional producers in Wales could benefit from having these options available to them and WAG could encourage the adoption of these approaches through appropriate Technology Transfer activities. · The way in which such substances will be regulated at a European level in future is evolving as the review of the Pesticide Directive 91/414 EEC enters the 4th Stage. This stage of the review includes (amongst others) those substances permitted for use in organic production. The guidance documents for the evaluation of applications on plant protection products made from plants or plant extracts and from chemical substances are currently at the draft stage. The response of the Pesticide Safety Directorate and Defra to these developments is not yet clear but this provides an excellent opportunity for WAG to have an input at an early stage in the review process

Genome evolution and host‐microbiome shifts correspond with intraspecific niche divergence within harmful algal bloom‐forming Microcystis aeruginosa

Intraspecific niche divergence is an important driver of species range, population abundance and impacts on ecosystem functions. Genetic changes are the primary focus when studying intraspecific divergence; however, the role of ecological interactions, particularly host‐microbiome symbioses, is receiving increased attention. The relative importance of these evolutionary and ecological mechanisms has seen only limited evaluation. To address this question, we used Microcystis aeruginosa, the globally distributed cyanobacterium that dominates freshwater harmful algal blooms. These blooms have been increasing in occurrence and intensity worldwide, causing major economic and ecological damages. We evaluated 46 isolates of M. aeruginosa and their microbiomes, collected from 14 lakes in Michigan, USA, that vary over 20‐fold in phosphorus levels, the primary limiting nutrient in freshwater systems. Genomes of M. aeruginosa diverged along this phosphorus gradient in genomic architecture and protein functions. Fitness in low‐phosphorus lakes corresponded with additional shifts within M. aeruginosa including genome‐wide reductions in nitrogen use, an expansion of phosphorus assimilation genes and an alternative life history strategy of nonclonal colony formation. In addition to host shifts, despite culturing in common‐garden conditions, host‐microbiomes diverged along the gradient in taxonomy, but converged in function with evidence of metabolic interdependence between the host and its microbiome. Divergence corresponded with a physiological trade‐off between fitness in low‐phosphorus environments and growth rate in phosphorus‐rich conditions. Co‐occurrence of genotypes adapted to different nutrient environments in phosphorus‐rich lakes may have critical implications for understanding how M. aeruginosa blooms persist after initial nutrient depletion. Ultimately, we demonstrate that the intertwined effects of genome evolution, host life history strategy and ecological interactions between a host and its microbiome correspond with an intraspecific niche shift with important implications for whole ecosystem function.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/151861/1/mec15198_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/151861/2/mec15198.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/151861/3/mec15198-sup-0001-Supinfo.pd

The accuracy of a river bed moulding/casting system and the effectiveness of a low-cost digital camera for recording river bed fabric

Digital photogrammetry has been used to develop and test an artificial river bed moulding and casting system, which allows the pebbles within a coarse grain river bed to be recreated for hydraulic research in a laboratory flow channel or flume. Imagery of both the original streambed and the cast facsimile was acquired using a non-metric Kodak DCS460 digital camera and digital elevation models and orthophotographs were derived and compared to assess the accuracy of the moulding and casting system. These comparative tests proved to be critical in modifying and developing the system. Additional imagery was obtained in the field using a non-metric Olympus C3030 “compact” digital camera to assess whether far cheaper camera technology could deliver data appropriate for such comparative examinations. Internal calibration parameter sets and data that were generated were compared with data obtained by the non-metric Kodak DCS460. These tests demonstrate that digital sensors built around highquality 35 mm professional camera bodies and lenses are required for comparative examinations and for similar system development

Urinary peptidome analyses for the diagnosis of chronic kidney disease in dogs

Chronic kidney disease (CKD) is clinically important in canine medicine. Current diagnostic tools lack sensitivity for detection of subclinical CKD. The aim of the present study was to evaluate urinary peptidome analysis for diagnosis of CKD in dogs. Capillary electrophoresis coupled to mass spectrometry analysis demonstrated presence of approximately 5400 peptides in dog urine. Comparison of urinary peptide abundance of dogs with and without CKD led to the identification of 133 differentially excreted peptides (adjusted P for each peptide <0.05). Sequence information was obtained for 35 of these peptides. This 35 peptide subset and the total group of 133 peptides were used to construct two predictive models of CKD which were subsequently validated by researchers masked to results in an independent cohort of 20 dogs. Both models diagnosed CKD with an area under the receiver operating characteristic (ROC) curve of 0.88 (95% confidence intervals [CI], 0.72–1.0). Most differentially excreted peptides represented fragments of collagen I, indicating possible association with fibrotic processes in CKD (similar to the equivalent human urinary peptide CKD model, CKD273). This first study of the urinary peptidome in dogs identified peptides that were associated with presence of CKD. Future studies are needed to validate the utility of this model for diagnosis and prediction of progression of canine CKD in a clinical setting

Intrakinetochore stretch is associated with changes in kinetochore phosphorylation and spindle assembly checkpoint activity

© 2009 Maresca and Salmon. This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 License. The definitive version was published in Journal of Cell Biology 184 (2009): 373-381, doi:10.1083/jcb.200808130.Cells have evolved a signaling pathway called the spindle assembly checkpoint (SAC) to increase the fidelity of chromosome segregation by generating a "wait anaphase" signal until all chromosomes are properly aligned within the mitotic spindle. It has been proposed that tension generated by the stretch of the centromeric chromatin of bioriented chromosomes stabilizes kinetochore microtubule attachments and turns off SAC activity. Although biorientation clearly causes stretching of the centromeric chromatin, it is unclear whether the kinetochore is also stretched. To test whether intrakinetochore stretch occurs and is involved in SAC regulation, we developed a Drosophila melanogaster S2 cell line expressing centromere identifier–mCherry and Ndc80–green fluorescent protein to mark the inner and outer kinetochore domains, respectively. We observed stretching within kinetochores of bioriented chromosomes by monitoring both inter- and intrakinetochore distances in live cell assays. This intrakinetochore stretch is largely independent of a 30-fold variation in centromere stretch. Furthermore, loss of intrakinetochore stretch is associated with enhancement of 3F3/2 phosphorylation and SAC activation.This work was supported by the American Cancer Society (grant PF0711401 to T.J. Maresca) and the National Institutes of Health (grant GM24364 to E.D. Salmon)

Simple large wood structures promote hydromorphological heterogeneity and benthic macroinvertebrate diversity in low-gradient rivers

This work has been carried out within the SMART Joint Doctorate Programme ‘Science for the MAnagement of Rivers and their Tidal systems’ funded by the Erasmus Mundus programme of the European Union

Molecular mechanism of dynein recruitment to kinetochores by the Rod-Zw10-Zwilch complex and Spindly

The molecular motor dynein concentrates at the kinetochore region of mitotic chromosomes in animals to accelerate spindle microtubule capture and to control spindle checkpoint signaling. In this study, we describe the molecular mechanism used by the Rod-Zw10-Zwilch complex and the adaptor Spindly to recruit dynein to kinetochores in Caenorhabditis elegans embryos and human cells. We show that Rod's N-terminal beta-propeller and the associated Zwilch subunit bind Spindly's C-terminal domain, and we identify a specific Zwilch mutant that abrogates Spindly and dynein recruitment in vivo and Spindly binding to a Rod beta-propeller-Zwilch complex in vitro. Spindly's N-terminal coiled-coil uses distinct motifs to bind dynein light intermediate chain and the pointed-end complex of dynactin. Mutations in these motifs inhibit assembly of a dynein-dynactin-Spindly complex, and a null mutant of the dynactin pointed-end subunit p27 prevents kinetochore recruitment of dynein-dynactin without affecting other mitotic functions of the motor. Conservation of Spindly-like motifs in adaptors involved in intracellular transport suggests a common mechanism for linking dynein to cargo.This work was supported by a European Research Council Starting Grant (Dyneinome 338410) and a European Molecular Biology Organization Installation Grant to R. Gassmann. This work was also supported by funding from the Fundacao para a Ciencia e a Tecnologia to R. Gassmann (IF/01015/2013/CP1157/CT0006), C. Pereira (SFRH_BPD_95648_2013), and D.J. Barbosa (SFRH_BPD_101898_2014). Some C. elegans strains were provided by the Caenorhabditis Genetics Center, which is funded by the National Institutes of Health Office of Research Infrastructure Programs (P40 OD010440)